Wall clock time and date at job start Tue Mar 31 2020 22:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47786 * 2 1 4 4 N 1.46497 * 109.47069 * 120.00699 * 2 1 3 5 5 C 1.34774 * 119.99919 * 274.99835 * 4 2 1 6 6 O 1.21282 * 120.00246 * 359.97438 * 5 4 2 7 7 C 1.50702 * 120.00313 * 180.02562 * 5 4 2 8 8 N 1.46495 * 109.47418 * 179.97438 * 7 5 4 9 9 C 1.36375 * 125.96042 * 269.68590 * 8 7 5 10 10 O 1.35630 * 125.99019 * 0.03391 * 9 8 7 11 11 N 1.30906 * 108.02197 * 179.88223 * 9 8 7 12 12 N 1.40118 * 107.94147 * 0.37551 * 11 9 8 13 13 C 1.30907 * 107.93652 * 359.76092 * 12 11 9 14 14 O 1.35629 * 125.98432 * 179.97438 * 13 12 11 15 15 C 1.53003 * 109.46976 * 240.00061 * 2 1 3 16 16 C 1.53042 * 109.45832 * 65.00076 * 15 2 1 17 17 C 1.53192 * 109.31334 * 178.62795 * 16 15 2 18 18 N 1.46923 * 108.77651 * 54.63913 * 17 16 15 19 19 C 1.36935 * 120.63374 * 126.36527 * 18 17 16 20 20 H 1.07995 * 119.99873 * 332.38583 * 19 18 17 21 21 C 1.38811 * 119.99806 * 152.37964 * 19 18 17 22 22 N 1.31615 * 120.00651 * 335.28172 * 21 19 18 23 23 Si 1.86803 * 119.99607 * 155.00135 * 21 19 18 24 24 H 1.48496 * 109.47436 * 60.00138 * 23 21 19 25 25 H 1.48503 * 109.47168 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47355 * 300.00110 * 23 21 19 27 27 C 1.46933 * 118.73785 * 306.64582 * 18 17 16 28 28 C 1.52757 * 109.00863 * 53.30252 * 27 18 17 29 29 H 1.08996 * 109.47786 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46881 * 299.99895 * 1 2 3 31 31 H 1.09005 * 109.47214 * 59.99198 * 1 2 3 32 32 H 0.97001 * 120.00082 * 94.99338 * 4 2 1 33 33 H 1.09003 * 109.46655 * 299.99253 * 7 5 4 34 34 H 1.08994 * 109.47310 * 59.99167 * 7 5 4 35 35 H 0.96704 * 113.99443 * 89.99670 * 10 9 8 36 36 H 0.96700 * 114.00294 * 270.02393 * 14 13 12 37 37 H 1.08990 * 109.46385 * 184.97478 * 15 2 1 38 38 H 1.09002 * 109.49413 * 58.67844 * 16 15 2 39 39 H 1.09002 * 109.53037 * 298.59780 * 16 15 2 40 40 H 1.09006 * 109.58761 * 294.85230 * 17 16 15 41 41 H 1.09002 * 109.70540 * 174.49489 * 17 16 15 42 42 H 0.97009 * 119.99439 * 353.96783 * 22 21 19 43 43 H 1.08994 * 109.58881 * 173.14244 * 27 18 17 44 44 H 1.09000 * 109.58205 * 293.56720 * 27 18 17 45 45 H 1.09003 * 109.56516 * 185.54962 * 28 27 18 46 46 H 1.09008 * 109.38393 * 65.51905 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1470 -0.0185 2.3571 6 8 1.8591 1.1584 2.4116 7 6 2.6499 -0.7289 3.5874 8 7 2.6997 0.2125 4.7088 9 6 3.7656 0.9892 5.0556 10 8 4.9645 1.0260 4.4226 11 7 3.4276 1.6956 6.1046 12 7 2.1115 1.3577 6.4468 13 6 1.6903 0.4607 5.5915 14 8 0.4648 -0.1205 5.5850 15 6 2.0399 -0.7213 -1.2493 16 6 1.6349 0.0694 -2.4955 17 6 2.1765 -0.6373 -3.7421 18 7 1.7122 -2.0313 -3.7347 19 6 1.0516 -2.5524 -4.8150 20 1 0.4806 -1.9041 -5.4630 21 6 1.1160 -3.9140 -5.0772 22 7 2.1373 -4.6207 -4.6414 23 14 -0.2509 -4.7450 -6.0419 24 1 -0.3548 -4.1251 -7.3873 25 1 0.0529 -6.1915 -6.1850 26 1 -1.5379 -4.5791 -5.3199 27 6 1.9647 -2.8536 -2.5435 28 6 1.4305 -2.1237 -1.3126 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5140 -0.8899 32 1 2.2489 -1.6319 1.1524 33 1 1.9776 -1.5511 3.8324 34 1 3.6491 -1.1208 3.3978 35 1 5.0143 1.6804 3.7123 36 1 0.4113 -0.9316 6.1087 37 1 3.1262 -0.7990 -1.2057 38 1 2.0499 1.0757 -2.4386 39 1 0.5480 0.1269 -2.5532 40 1 3.2662 -0.6151 -3.7304 41 1 1.8104 -0.1351 -4.6375 42 1 2.8867 -4.1772 -4.2139 43 1 1.4569 -3.8125 -2.6471 44 1 3.0368 -3.0158 -2.4321 45 1 1.6999 -2.6784 -0.4137 46 1 0.3453 -2.0460 -1.3805 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734577867.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:28 Heat of formation + Delta-G solvation = -2.433383 kcal Electronic energy + Delta-G solvation = -30145.431280 eV Core-core repulsion = 25880.708726 eV Total energy + Delta-G solvation = -4264.722554 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.67708 -40.27998 -38.56474 -38.41481 -37.46783 -35.75229 -34.67878 -33.32322 -31.31063 -30.28823 -29.93419 -29.11428 -28.10980 -25.44984 -23.60376 -23.15912 -22.74999 -22.36674 -21.25781 -20.57253 -19.26633 -19.22755 -18.82671 -17.99818 -17.43785 -17.19071 -16.62913 -16.02577 -15.75721 -15.50735 -14.73377 -14.63748 -14.47991 -14.03373 -13.80300 -13.61055 -13.53684 -13.37768 -13.26832 -12.93929 -12.79727 -12.69559 -12.33252 -11.96616 -11.76460 -11.71407 -11.33998 -11.06805 -10.97620 -10.91925 -10.74950 -10.49827 -10.39935 -10.16825 -10.10349 -9.91387 -9.82625 -9.77978 -9.39547 -9.30514 -8.45486 -6.97653 -6.14702 -3.31472 1.06330 1.33969 1.86840 2.08727 2.70082 2.87263 3.37232 3.44000 3.46460 3.64625 3.94042 4.15668 4.37341 4.52333 4.76454 4.82051 4.83012 4.91209 5.05233 5.18975 5.27009 5.38557 5.40660 5.49355 5.61913 5.66506 5.76211 5.86059 5.90089 6.03141 6.10725 6.18700 6.24037 6.34175 6.43540 6.48441 6.61553 6.62433 6.72353 6.88400 6.95582 7.07574 7.10869 7.52230 7.74707 7.92776 8.49691 9.03437 9.76451 10.20590 11.13495 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023925 B = 0.002253 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.065317 B =12423.713070 C =12625.494991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.147 3.853 3 H 0.084 0.916 4 N -0.712 5.712 5 C 0.497 3.503 6 O -0.528 6.528 7 C 0.080 3.920 8 N -0.497 5.497 9 C 0.417 3.583 10 O -0.438 6.438 11 N -0.294 5.294 12 N -0.296 5.296 13 C 0.417 3.583 14 O -0.433 6.433 15 C -0.085 4.085 16 C -0.126 4.126 17 C 0.148 3.852 18 N -0.598 5.598 19 C -0.349 4.349 20 H 0.056 0.944 21 C -0.024 4.024 22 N -0.916 5.916 23 Si 1.063 2.937 24 H -0.292 1.292 25 H -0.285 1.285 26 H -0.293 1.293 27 C 0.150 3.850 28 C -0.132 4.132 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.403 0.597 33 H 0.127 0.873 34 H 0.131 0.869 35 H 0.415 0.585 36 H 0.411 0.589 37 H 0.068 0.932 38 H 0.052 0.948 39 H 0.065 0.935 40 H 0.015 0.985 41 H 0.056 0.944 42 H 0.268 0.732 43 H 0.079 0.921 44 H 0.014 0.986 45 H 0.045 0.955 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.566 5.298 17.247 18.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.044 3.956 3 H 0.102 0.898 4 N -0.364 5.364 5 C 0.280 3.720 6 O -0.404 6.404 7 C -0.048 4.048 8 N -0.217 5.217 9 C 0.107 3.893 10 O -0.238 6.238 11 N -0.138 5.138 12 N -0.139 5.139 13 C 0.108 3.892 14 O -0.232 6.232 15 C -0.104 4.104 16 C -0.165 4.165 17 C 0.021 3.979 18 N -0.322 5.322 19 C -0.478 4.478 20 H 0.073 0.927 21 C -0.226 4.226 22 N -0.556 5.556 23 Si 0.892 3.108 24 H -0.219 1.219 25 H -0.211 1.211 26 H -0.221 1.221 27 C 0.024 3.976 28 C -0.171 4.171 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.239 0.761 33 H 0.145 0.855 34 H 0.149 0.851 35 H 0.275 0.725 36 H 0.269 0.731 37 H 0.087 0.913 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.033 0.967 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.098 0.902 44 H 0.032 0.968 45 H 0.063 0.937 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.840 5.706 17.905 18.811 hybrid contribution 0.587 -0.032 -0.882 1.060 sum 1.428 5.674 17.023 18.001 Atomic orbital electron populations 1.22230 0.94957 1.02710 1.02243 1.21172 0.94535 0.96779 0.83142 0.89799 1.46133 1.66398 1.14393 1.09498 1.20558 0.78841 0.87866 0.84747 1.90789 1.49468 1.15620 1.84549 1.21761 1.06499 0.91904 0.84625 1.46593 1.12205 1.36837 1.26073 1.21280 0.82288 0.92224 0.93555 1.84896 1.22826 1.63127 1.52974 1.78373 1.03774 1.18916 1.12690 1.78369 1.02095 1.13694 1.19790 1.21257 0.82758 0.95765 0.89470 1.85024 1.19849 1.44686 1.73659 1.21324 0.99970 0.96243 0.92891 1.22054 1.01547 0.97463 0.95483 1.20883 0.95457 0.86583 0.94950 1.44091 1.66889 1.07776 1.13455 1.19973 1.26562 0.94731 1.06515 0.92653 1.25833 1.01356 0.94656 1.00756 1.70796 1.05788 1.39224 1.39832 0.83553 0.75306 0.76291 0.75608 1.21948 1.21085 1.22072 1.20841 0.96711 0.95368 0.84646 1.22134 1.01244 0.94673 0.99048 0.91720 0.92865 0.91039 0.76136 0.85502 0.85089 0.72541 0.73111 0.91336 0.92889 0.91629 0.96737 0.92540 0.92100 0.90225 0.96804 0.93675 0.91531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 8.75 37.16 0.33 -1.66 16 2 C 0.15 1.72 2.35 -67.93 -0.16 1.56 16 3 H 0.08 1.09 7.58 -51.93 -0.39 0.70 16 4 N -0.71 -6.50 5.01 -53.81 -0.27 -6.77 16 5 C 0.50 4.84 7.86 -10.99 -0.09 4.76 16 6 O -0.53 -7.54 16.09 5.56 0.09 -7.45 16 7 C 0.08 0.49 6.49 -5.20 -0.03 0.46 16 8 N -0.50 -4.62 2.25 -121.35 -0.27 -4.89 16 9 C 0.42 4.44 9.15 -88.81 -0.81 3.63 16 10 O -0.44 -3.41 13.57 -18.59 -0.25 -3.67 16 11 N -0.29 -3.98 12.72 29.66 0.38 -3.60 16 12 N -0.30 -4.00 12.72 29.65 0.38 -3.62 16 13 C 0.42 4.43 9.15 -88.81 -0.81 3.62 16 14 O -0.43 -3.32 13.58 -18.59 -0.25 -3.57 16 15 C -0.09 -1.15 2.09 -90.58 -0.19 -1.34 16 16 C -0.13 -1.93 5.08 -26.61 -0.14 -2.06 16 17 C 0.15 2.87 6.52 -3.71 -0.02 2.84 16 18 N -0.60 -13.91 2.86 -172.58 -0.49 -14.41 16 19 C -0.35 -9.28 9.49 -15.06 -0.14 -9.42 16 20 H 0.06 1.49 7.94 -52.49 -0.42 1.07 16 21 C -0.02 -0.65 4.69 -17.43 -0.08 -0.74 16 22 N -0.92 -26.25 12.40 55.49 0.69 -25.56 16 23 Si 1.06 24.27 29.99 -169.99 -5.10 19.17 16 24 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 25 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 27 C 0.15 3.15 4.66 -3.93 -0.02 3.13 16 28 C -0.13 -2.03 4.70 -26.84 -0.13 -2.15 16 29 H 0.06 0.78 6.37 -51.93 -0.33 0.45 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.89 6.60 -51.93 -0.34 0.55 16 32 H 0.40 2.84 7.16 -40.82 -0.29 2.55 16 33 H 0.13 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.13 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.42 1.66 9.06 45.56 0.41 2.07 16 36 H 0.41 0.58 9.06 45.56 0.41 0.99 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 1.05 6.64 -51.93 -0.34 0.70 16 40 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 41 H 0.06 1.12 7.93 -51.93 -0.41 0.70 16 42 H 0.27 7.71 6.71 -40.82 -0.27 7.43 16 43 H 0.08 1.92 6.30 -51.93 -0.33 1.59 16 44 H 0.01 0.30 7.87 -51.93 -0.41 -0.11 16 45 H 0.04 0.56 6.74 -51.93 -0.35 0.21 16 46 H 0.07 1.10 6.43 -51.92 -0.33 0.76 16 LS Contribution 374.73 15.07 5.65 5.65 Total: -1.00 -37.31 374.73 -6.49 -43.80 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -4.73 Total: 2.31 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: -2.30 Total: 2.62 kcal Atomic # 7 Polarization: -59.26 SS G_CDS: 0.41 Total: -58.86 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -0.42 Total: -14.69 kcal Atomic # 14 Polarization: 24.27 SS G_CDS: -5.10 Total: 19.17 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -37.31 -6.49 -43.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734577867.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.363 kcal (2) G-P(sol) polarization free energy of solvation -37.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds