Wall clock time and date at job start Tue Mar 31 2020 22:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47281 * 2 1 4 4 C 1.53001 * 109.47194 * 239.99145 * 2 1 3 5 5 C 1.53000 * 109.46886 * 175.00077 * 4 2 1 6 6 N 1.46499 * 109.46840 * 180.02562 * 5 4 2 7 7 C 1.34779 * 119.99872 * 180.02562 * 6 5 4 8 8 O 1.21640 * 120.00106 * 0.02562 * 7 6 5 9 9 C 1.47250 * 119.99999 * 180.02562 * 7 6 5 10 10 C 1.36244 * 126.16720 * 179.71478 * 9 7 6 11 11 N 1.36339 * 106.89014 * 179.84940 * 10 9 7 12 12 C 1.46500 * 126.20067 * 180.15863 * 11 10 9 13 13 C 1.36169 * 107.60096 * 0.41747 * 11 10 9 14 14 O 1.35453 * 125.55157 * 179.74037 * 13 11 10 15 15 N 1.30702 * 108.89768 * 359.73650 * 13 11 10 16 16 N 1.46909 * 109.46807 * 119.99744 * 2 1 3 17 17 C 1.46902 * 110.99504 * 274.99912 * 16 2 1 18 18 C 1.50702 * 109.46730 * 180.02562 * 17 16 2 19 19 O 1.21295 * 119.99801 * 0.02562 * 18 17 16 20 20 N 1.34773 * 120.00164 * 179.97438 * 18 17 16 21 21 C 1.37102 * 120.00303 * 179.97438 * 20 18 17 22 22 H 1.07995 * 119.99853 * 0.02562 * 21 20 18 23 23 C 1.38948 * 119.99926 * 179.97438 * 21 20 18 24 24 N 1.31409 * 119.99832 * 180.02562 * 23 21 20 25 25 Si 1.86796 * 120.00106 * 0.02562 * 23 21 20 26 26 H 1.48503 * 109.47014 * 89.99986 * 25 23 21 27 27 H 1.48503 * 109.47345 * 209.99578 * 25 23 21 28 28 H 1.48497 * 109.47311 * 329.99861 * 25 23 21 29 29 H 1.09002 * 109.46818 * 60.00551 * 1 2 3 30 30 H 1.09004 * 109.47242 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47237 * 300.00371 * 1 2 3 32 32 H 1.09001 * 109.46652 * 55.00422 * 4 2 1 33 33 H 1.08992 * 109.47514 * 295.00511 * 4 2 1 34 34 H 1.09002 * 109.47398 * 300.00496 * 5 4 2 35 35 H 1.09001 * 109.47194 * 60.00677 * 5 4 2 36 36 H 0.97000 * 120.00420 * 0.02562 * 6 5 4 37 37 H 1.08008 * 126.55577 * 359.97438 * 10 9 7 38 38 H 1.08994 * 109.47071 * 270.33193 * 12 11 10 39 39 H 1.08998 * 109.47242 * 30.32925 * 12 11 10 40 40 H 1.09001 * 109.47199 * 150.32916 * 12 11 10 41 41 H 0.96697 * 114.00258 * 270.02516 * 14 13 11 42 42 H 1.00897 * 110.99647 * 38.95193 * 16 2 1 43 43 H 1.08996 * 109.47071 * 299.99790 * 17 16 2 44 44 H 1.08993 * 109.47443 * 60.00317 * 17 16 2 45 45 H 0.97003 * 120.00110 * 0.02562 * 20 18 17 46 46 H 0.96996 * 120.00226 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 3.5648 -0.6135 -1.3135 6 7 4.0531 -1.3037 -2.5099 7 6 5.3741 -1.3399 -2.7751 8 8 6.1609 -0.7998 -2.0208 9 6 5.8649 -2.0332 -3.9779 10 6 7.1655 -2.1422 -4.3687 11 7 7.1721 -2.8613 -5.5269 12 6 8.3543 -3.2300 -6.3097 13 6 5.8804 -3.1699 -5.8274 14 8 5.4701 -3.8747 -6.9089 15 7 5.1008 -2.6752 -4.9023 16 7 2.0196 -0.6925 1.1996 17 6 2.0824 0.2228 2.3469 18 6 2.5883 -0.5213 3.5558 19 8 2.8695 -1.6981 3.4699 20 7 2.7294 0.1211 4.7322 21 6 3.1893 -0.5559 5.8322 22 1 3.4388 -1.6039 5.7559 23 6 3.3352 0.1065 7.0448 24 7 3.7764 -0.5423 8.0990 25 14 2.9043 1.9193 7.1766 26 1 1.4751 2.0622 7.5541 27 1 3.7560 2.5566 8.2128 28 1 3.1389 2.5803 5.8677 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.6054 -0.2619 -2.1369 33 1 1.7516 -1.7716 -1.2054 34 1 3.8532 0.4368 -1.3572 35 1 3.9995 -1.0729 -0.4258 36 1 3.4258 -1.7347 -3.1112 37 1 8.0268 -1.7381 -3.8574 38 1 8.5643 -2.4490 -7.0404 39 1 9.2098 -3.3442 -5.6440 40 1 8.1684 -4.1712 -6.8272 41 1 5.2796 -3.3296 -7.6846 42 1 1.4494 -1.4978 1.4101 43 1 2.7588 1.0462 2.1182 44 1 1.0870 0.6165 2.5525 45 1 2.5050 1.0623 4.8009 46 1 3.8780 -0.0800 8.9456 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753013815.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:19 Heat of formation + Delta-G solvation = -42.696398 kcal Electronic energy + Delta-G solvation = -28166.850932 eV Core-core repulsion = 23900.382442 eV Total energy + Delta-G solvation = -4266.468489 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.56869 -39.39018 -38.55475 -37.75490 -37.08425 -34.80973 -34.54035 -33.86819 -31.70542 -31.35595 -29.66300 -28.92613 -27.55462 -26.42731 -24.35599 -23.58576 -22.37945 -21.79420 -20.91785 -20.14640 -19.31108 -18.97525 -18.28763 -17.79735 -16.72962 -16.14222 -16.02888 -15.79939 -15.58350 -15.25353 -14.94725 -14.76820 -14.72807 -14.65091 -14.01330 -13.85705 -13.48762 -13.37558 -13.26342 -13.06813 -12.89593 -12.72998 -12.41474 -12.30870 -12.12694 -11.83852 -11.58146 -11.31203 -11.18282 -11.09783 -10.84348 -10.73182 -10.54364 -10.25543 -10.07451 -9.91619 -9.50862 -9.06957 -8.80130 -8.51425 -8.12583 -8.03359 -6.25086 -3.76139 1.18018 1.72985 1.96636 3.03048 3.07977 3.11089 3.19378 3.36316 3.49481 3.81991 4.13997 4.14567 4.18176 4.22574 4.49106 4.74768 4.76669 4.80077 4.91265 5.00921 5.11106 5.20421 5.28520 5.35619 5.41837 5.45363 5.60133 5.66552 5.76845 5.79696 5.84690 5.95575 6.01709 6.05838 6.08788 6.18231 6.34225 6.52035 7.02711 7.18814 7.20252 7.62107 7.64543 7.67161 8.21425 8.26127 8.66476 9.01642 9.49143 9.90180 10.88217 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016553 B = 0.001843 C = 0.001725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.098857 B =15187.413336 C =16223.802720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.085 3.915 3 H 0.080 0.920 4 C -0.116 4.116 5 C 0.122 3.878 6 N -0.715 5.715 7 C 0.600 3.400 8 O -0.538 6.538 9 C -0.044 4.044 10 C 0.044 3.956 11 N -0.464 5.464 12 C 0.067 3.933 13 C 0.376 3.624 14 O -0.439 6.439 15 N -0.455 5.455 16 N -0.662 5.662 17 C 0.048 3.952 18 C 0.451 3.549 19 O -0.563 6.563 20 N -0.592 5.592 21 C -0.303 4.303 22 H 0.119 0.881 23 C 0.040 3.960 24 N -0.883 5.883 25 Si 0.880 3.120 26 H -0.272 1.272 27 H -0.277 1.277 28 H -0.269 1.269 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.090 0.910 36 H 0.405 0.595 37 H 0.197 0.803 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.402 0.598 42 H 0.352 0.648 43 H 0.087 0.913 44 H 0.044 0.956 45 H 0.370 0.630 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.030 1.220 -33.678 33.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.026 4.026 3 H 0.098 0.902 4 C -0.154 4.154 5 C 0.000 4.000 6 N -0.365 5.365 7 C 0.385 3.615 8 O -0.415 6.415 9 C -0.173 4.173 10 C -0.093 4.093 11 N -0.159 5.159 12 C -0.075 4.075 13 C 0.075 3.925 14 O -0.240 6.240 15 N -0.186 5.186 16 N -0.295 5.295 17 C -0.085 4.085 18 C 0.236 3.764 19 O -0.445 6.445 20 N -0.232 5.232 21 C -0.432 4.432 22 H 0.137 0.863 23 C -0.163 4.163 24 N -0.523 5.523 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.194 1.194 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.109 0.891 36 H 0.240 0.760 37 H 0.214 0.786 38 H 0.100 0.900 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.258 0.742 42 H 0.172 0.828 43 H 0.105 0.895 44 H 0.062 0.938 45 H 0.203 0.797 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.767 0.228 -32.876 32.993 hybrid contribution -0.714 1.682 -0.309 1.853 sum 2.053 1.910 -33.185 33.303 Atomic orbital electron populations 1.22516 0.97168 1.02378 1.02128 1.21509 0.92408 0.98127 0.90529 0.90208 1.21746 0.94616 1.01859 0.97190 1.21420 0.93865 0.97137 0.87625 1.45829 1.07074 1.56430 1.27179 1.16773 0.82622 0.79176 0.82894 1.90852 1.55653 1.46442 1.48528 1.20499 0.90581 1.07349 0.98877 1.22711 1.00154 0.97864 0.88601 1.45826 1.08347 1.40919 1.20812 1.22164 0.86125 1.02623 0.96567 1.20252 0.79660 0.99800 0.92776 1.84906 1.85702 1.32713 1.20641 1.70846 1.31269 1.13007 1.03434 1.60197 1.57773 1.09056 1.02455 1.21733 0.99861 0.95902 0.90993 1.19747 0.84607 0.88267 0.83736 1.90571 1.53659 1.16064 1.84199 1.42210 1.60335 1.11041 1.09605 1.19435 1.40151 0.97922 0.85670 0.86306 1.25037 0.97567 0.98368 0.95284 1.69622 1.45311 1.36562 1.00812 0.86666 0.79157 0.85055 0.78485 1.19743 1.20223 1.19438 0.92174 0.92204 0.92461 0.91424 0.90978 0.91913 0.89131 0.76005 0.78609 0.90035 0.88827 0.88835 0.74152 0.82838 0.89468 0.93790 0.79733 0.91688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.75 9.16 37.16 0.34 -1.41 16 2 C 0.09 0.96 2.59 -67.71 -0.18 0.78 16 3 H 0.08 0.86 7.80 -51.93 -0.40 0.46 16 4 C -0.12 -1.18 5.01 -26.73 -0.13 -1.32 16 5 C 0.12 1.57 5.56 -4.04 -0.02 1.55 16 6 N -0.71 -8.83 5.55 -61.43 -0.34 -9.17 16 7 C 0.60 8.51 7.81 -12.60 -0.10 8.41 16 8 O -0.54 -9.36 16.88 5.24 0.09 -9.27 16 9 C -0.04 -0.53 6.97 -83.06 -0.58 -1.11 16 10 C 0.04 0.40 11.29 -16.27 -0.18 0.22 16 11 N -0.46 -3.26 3.16 -125.77 -0.40 -3.65 16 12 C 0.07 0.16 11.11 59.85 0.66 0.83 16 13 C 0.38 3.32 9.03 -89.17 -0.81 2.51 16 14 O -0.44 -2.69 13.55 -18.05 -0.24 -2.94 16 15 N -0.46 -5.18 11.03 -11.22 -0.12 -5.30 16 16 N -0.66 -10.11 5.33 -107.99 -0.58 -10.68 16 17 C 0.05 0.80 5.97 -4.97 -0.03 0.77 16 18 C 0.45 10.46 7.82 -10.99 -0.09 10.38 16 19 O -0.56 -15.49 15.78 5.54 0.09 -15.40 16 20 N -0.59 -14.45 5.09 -10.96 -0.06 -14.51 16 21 C -0.30 -8.78 10.16 -14.93 -0.15 -8.93 16 22 H 0.12 3.93 7.39 -52.49 -0.39 3.55 16 23 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 24 N -0.88 -26.31 13.96 55.50 0.77 -25.54 16 25 Si 0.88 19.80 27.74 -169.99 -4.71 15.09 16 26 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 27 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 28 H -0.27 -5.54 6.52 56.52 0.37 -5.17 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 31 H 0.06 0.58 7.45 -51.93 -0.39 0.19 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.09 1.48 7.75 -51.93 -0.40 1.07 16 36 H 0.41 4.31 8.18 -40.82 -0.33 3.97 16 37 H 0.20 1.39 8.06 -52.48 -0.42 0.97 16 38 H 0.08 0.06 8.14 -51.93 -0.42 -0.36 16 39 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 40 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 41 H 0.40 0.33 9.06 45.56 0.41 0.74 16 42 H 0.35 5.61 8.17 -39.29 -0.32 5.29 16 43 H 0.09 1.34 8.05 -51.93 -0.42 0.92 16 44 H 0.04 0.64 7.44 -51.93 -0.39 0.25 16 45 H 0.37 7.93 5.76 -40.82 -0.24 7.69 16 46 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 395.30 15.07 5.96 5.96 Total: -1.00 -39.17 395.30 -6.74 -45.91 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: -5.84 Total: 15.81 kcal Atomic # 6 Polarization: 15.06 SS G_CDS: -1.36 Total: 13.70 kcal Atomic # 7 Polarization: -68.15 SS G_CDS: -0.72 Total: -68.86 kcal Atomic # 8 Polarization: -27.54 SS G_CDS: -0.07 Total: -27.60 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -4.71 Total: 15.09 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -39.17 -6.74 -45.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753013815.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.211 kcal (2) G-P(sol) polarization free energy of solvation -39.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds