Wall clock time and date at job start Tue Mar 31 2020 22:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47281 * 2 1 4 4 C 1.53001 * 109.47194 * 239.99145 * 2 1 3 5 5 C 1.53000 * 109.46886 * 175.00077 * 4 2 1 6 6 N 1.46499 * 109.46840 * 180.02562 * 5 4 2 7 7 C 1.34779 * 119.99872 * 180.02562 * 6 5 4 8 8 O 1.21640 * 120.00106 * 0.02562 * 7 6 5 9 9 C 1.47250 * 119.99999 * 180.02562 * 7 6 5 10 10 C 1.36244 * 126.16720 * 179.71478 * 9 7 6 11 11 N 1.36339 * 106.89014 * 179.84940 * 10 9 7 12 12 C 1.46500 * 126.20067 * 180.15863 * 11 10 9 13 13 C 1.36169 * 107.60096 * 0.41747 * 11 10 9 14 14 O 1.35453 * 125.55157 * 179.74037 * 13 11 10 15 15 N 1.30702 * 108.89768 * 359.73650 * 13 11 10 16 16 N 1.46909 * 109.46807 * 119.99744 * 2 1 3 17 17 C 1.46902 * 110.99504 * 274.99912 * 16 2 1 18 18 C 1.50702 * 109.46730 * 180.02562 * 17 16 2 19 19 O 1.21295 * 119.99801 * 0.02562 * 18 17 16 20 20 N 1.34773 * 120.00164 * 179.97438 * 18 17 16 21 21 C 1.37102 * 120.00303 * 179.97438 * 20 18 17 22 22 H 1.07995 * 119.99853 * 0.02562 * 21 20 18 23 23 C 1.38948 * 119.99926 * 179.97438 * 21 20 18 24 24 N 1.31409 * 119.99832 * 180.02562 * 23 21 20 25 25 Si 1.86796 * 120.00106 * 0.02562 * 23 21 20 26 26 H 1.48503 * 109.47014 * 89.99986 * 25 23 21 27 27 H 1.48503 * 109.47345 * 209.99578 * 25 23 21 28 28 H 1.48497 * 109.47311 * 329.99861 * 25 23 21 29 29 H 1.09002 * 109.46818 * 60.00551 * 1 2 3 30 30 H 1.09004 * 109.47242 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47237 * 300.00371 * 1 2 3 32 32 H 1.09001 * 109.46652 * 55.00422 * 4 2 1 33 33 H 1.08992 * 109.47514 * 295.00511 * 4 2 1 34 34 H 1.09002 * 109.47398 * 300.00496 * 5 4 2 35 35 H 1.09001 * 109.47194 * 60.00677 * 5 4 2 36 36 H 0.97000 * 120.00420 * 0.02562 * 6 5 4 37 37 H 1.08008 * 126.55577 * 359.97438 * 10 9 7 38 38 H 1.08994 * 109.47071 * 270.33193 * 12 11 10 39 39 H 1.08998 * 109.47242 * 30.32925 * 12 11 10 40 40 H 1.09001 * 109.47199 * 150.32916 * 12 11 10 41 41 H 0.96697 * 114.00258 * 270.02516 * 14 13 11 42 42 H 1.00897 * 110.99647 * 38.95193 * 16 2 1 43 43 H 1.08996 * 109.47071 * 299.99790 * 17 16 2 44 44 H 1.08993 * 109.47443 * 60.00317 * 17 16 2 45 45 H 0.97003 * 120.00110 * 0.02562 * 20 18 17 46 46 H 0.96996 * 120.00226 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 3.5648 -0.6135 -1.3135 6 7 4.0531 -1.3037 -2.5099 7 6 5.3741 -1.3399 -2.7751 8 8 6.1609 -0.7998 -2.0208 9 6 5.8649 -2.0332 -3.9779 10 6 7.1655 -2.1422 -4.3687 11 7 7.1721 -2.8613 -5.5269 12 6 8.3543 -3.2300 -6.3097 13 6 5.8804 -3.1699 -5.8274 14 8 5.4701 -3.8747 -6.9089 15 7 5.1008 -2.6752 -4.9023 16 7 2.0196 -0.6925 1.1996 17 6 2.0824 0.2228 2.3469 18 6 2.5883 -0.5213 3.5558 19 8 2.8695 -1.6981 3.4699 20 7 2.7294 0.1211 4.7322 21 6 3.1893 -0.5559 5.8322 22 1 3.4388 -1.6039 5.7559 23 6 3.3352 0.1065 7.0448 24 7 3.7764 -0.5423 8.0990 25 14 2.9043 1.9193 7.1766 26 1 1.4751 2.0622 7.5541 27 1 3.7560 2.5566 8.2128 28 1 3.1389 2.5803 5.8677 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.6054 -0.2619 -2.1369 33 1 1.7516 -1.7716 -1.2054 34 1 3.8532 0.4368 -1.3572 35 1 3.9995 -1.0729 -0.4258 36 1 3.4258 -1.7347 -3.1112 37 1 8.0268 -1.7381 -3.8574 38 1 8.5643 -2.4490 -7.0404 39 1 9.2098 -3.3442 -5.6440 40 1 8.1684 -4.1712 -6.8272 41 1 5.2796 -3.3296 -7.6846 42 1 1.4494 -1.4978 1.4101 43 1 2.7588 1.0462 2.1182 44 1 1.0870 0.6165 2.5525 45 1 2.5050 1.0623 4.8009 46 1 3.8780 -0.0800 8.9456 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753013815.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:18 Heat of formation + Delta-G solvation = -79.975900 kcal Electronic energy + Delta-G solvation = -28168.467492 eV Core-core repulsion = 23900.382442 eV Total energy + Delta-G solvation = -4268.085050 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.22803 -40.48229 -40.26500 -38.37954 -38.18253 -36.08567 -35.74056 -35.14786 -33.75340 -32.60888 -30.48069 -29.70697 -28.05972 -28.01941 -25.65361 -24.88998 -23.26302 -22.40321 -21.87961 -21.31109 -21.02108 -20.25010 -19.55060 -18.58532 -17.71159 -17.39369 -17.00804 -16.87328 -16.72504 -16.50363 -16.38996 -15.89500 -15.54248 -15.41343 -15.29554 -14.98150 -14.79759 -14.52706 -14.40997 -14.25258 -13.87763 -13.57699 -13.55469 -13.48481 -13.12085 -12.94032 -12.84223 -12.64151 -12.41158 -12.22225 -12.14466 -11.96667 -11.71099 -11.52067 -11.50033 -11.09832 -10.84884 -10.41837 -10.23871 -10.10071 -9.57429 -9.21182 -8.40565 -6.01378 0.45117 1.05315 1.30890 1.35985 1.38679 1.45195 1.97792 2.18822 2.23834 2.42384 2.76555 2.80993 3.16017 3.47198 3.60811 3.79946 3.90226 4.06899 4.15364 4.17930 4.31913 4.37490 4.40701 4.45549 4.51126 4.59915 4.62421 4.70072 4.77504 4.85279 4.93850 5.06093 5.19870 5.22621 5.28838 5.35821 5.50868 5.54351 5.62759 5.93258 6.14179 6.40384 6.47675 6.61221 6.61500 6.73219 6.89274 7.24394 7.41064 7.98491 8.77324 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016553 B = 0.001843 C = 0.001725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.098857 B =15187.413336 C =16223.802720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.087 3.913 3 H 0.091 0.909 4 C -0.105 4.105 5 C 0.128 3.872 6 N -0.706 5.706 7 C 0.594 3.406 8 O -0.582 6.582 9 C -0.080 4.080 10 C 0.056 3.944 11 N -0.456 5.456 12 C 0.059 3.941 13 C 0.380 3.620 14 O -0.441 6.441 15 N -0.485 5.485 16 N -0.683 5.683 17 C 0.064 3.936 18 C 0.447 3.553 19 O -0.615 6.615 20 N -0.592 5.592 21 C -0.329 4.329 22 H 0.053 0.947 23 C -0.017 4.017 24 N -0.935 5.935 25 Si 0.967 3.033 26 H -0.255 1.255 27 H -0.275 1.275 28 H -0.232 1.232 29 H 0.082 0.918 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.098 0.902 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.049 0.951 36 H 0.414 0.586 37 H 0.213 0.787 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.104 0.896 41 H 0.426 0.574 42 H 0.344 0.656 43 H 0.110 0.890 44 H 0.079 0.921 45 H 0.390 0.610 46 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.010 3.954 -36.740 36.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.023 4.023 3 H 0.109 0.891 4 C -0.143 4.143 5 C 0.004 3.996 6 N -0.357 5.357 7 C 0.381 3.619 8 O -0.463 6.463 9 C -0.208 4.208 10 C -0.084 4.084 11 N -0.149 5.149 12 C -0.081 4.081 13 C 0.078 3.922 14 O -0.245 6.245 15 N -0.216 5.216 16 N -0.316 5.316 17 C -0.069 4.069 18 C 0.235 3.765 19 O -0.499 6.499 20 N -0.234 5.234 21 C -0.458 4.458 22 H 0.071 0.929 23 C -0.216 4.216 24 N -0.576 5.576 25 Si 0.787 3.213 26 H -0.179 1.179 27 H -0.200 1.200 28 H -0.155 1.155 29 H 0.101 0.899 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.117 0.883 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.251 0.749 37 H 0.230 0.770 38 H 0.122 0.878 39 H 0.125 0.875 40 H 0.122 0.878 41 H 0.287 0.713 42 H 0.163 0.837 43 H 0.128 0.872 44 H 0.097 0.903 45 H 0.225 0.775 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.715 2.960 -36.029 36.191 hybrid contribution -0.323 0.626 0.496 0.861 sum 1.393 3.586 -35.533 35.740 Atomic orbital electron populations 1.22436 0.95306 1.02568 1.03180 1.21617 0.93801 0.98204 0.88705 0.89083 1.21705 0.92441 1.02031 0.98144 1.21292 0.95571 0.96466 0.86241 1.45788 1.06938 1.55970 1.26957 1.17184 0.82716 0.78692 0.83265 1.90808 1.56636 1.48575 1.50237 1.20269 0.91937 1.09471 0.99099 1.22971 0.99636 0.96989 0.88797 1.46032 1.09115 1.39591 1.20148 1.22541 0.84720 1.03910 0.96885 1.20328 0.80173 0.98792 0.92897 1.84873 1.85580 1.33138 1.20870 1.70720 1.32449 1.14246 1.04206 1.60192 1.58909 1.09264 1.03211 1.21640 1.01686 0.95388 0.88166 1.21094 0.82412 0.87976 0.84988 1.90547 1.55287 1.18864 1.85245 1.42038 1.60703 1.11799 1.08845 1.19007 1.42486 0.95993 0.88327 0.92879 1.26148 0.96417 1.05150 0.93842 1.69809 1.46359 1.39649 1.01792 0.85338 0.79467 0.76344 0.80196 1.17917 1.20028 1.15543 0.89896 0.92507 0.92572 0.88324 0.91316 0.92078 0.93227 0.74944 0.77048 0.87752 0.87481 0.87787 0.71348 0.83668 0.87242 0.90290 0.77470 0.91164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.80 9.16 71.98 0.66 -2.14 16 2 C 0.09 1.74 2.59 44.91 0.12 1.86 16 3 H 0.09 1.66 7.80 -2.39 -0.02 1.65 16 4 C -0.10 -1.98 5.01 30.59 0.15 -1.83 16 5 C 0.13 3.31 5.56 86.38 0.48 3.79 16 6 N -0.71 -17.86 5.55 -466.52 -2.59 -20.45 16 7 C 0.59 17.55 7.81 86.61 0.68 18.23 16 8 O -0.58 -21.30 16.88 -4.16 -0.07 -21.37 16 9 C -0.08 -1.93 6.97 40.40 0.28 -1.65 16 10 C 0.06 0.98 11.29 83.53 0.94 1.92 16 11 N -0.46 -5.59 3.16 -662.76 -2.09 -7.68 16 12 C 0.06 0.13 11.11 127.77 1.42 1.54 16 13 C 0.38 6.18 9.03 179.84 1.62 7.80 16 14 O -0.44 -4.48 13.55 -87.51 -1.19 -5.67 16 15 N -0.49 -10.88 11.03 -303.16 -3.34 -14.23 16 16 N -0.68 -20.35 5.33 -495.57 -2.64 -22.99 16 17 C 0.06 2.00 5.97 85.56 0.51 2.51 16 18 C 0.45 21.04 7.82 87.66 0.69 21.72 16 19 O -0.62 -35.61 15.78 -3.08 -0.05 -35.65 16 20 N -0.59 -28.98 5.09 -306.99 -1.56 -30.54 16 21 C -0.33 -19.94 10.16 84.04 0.85 -19.08 16 22 H 0.05 3.83 7.39 -2.91 -0.02 3.81 16 23 C -0.02 -0.98 5.50 84.93 0.47 -0.52 16 24 N -0.94 -57.86 13.96 21.66 0.30 -57.56 16 25 Si 0.97 39.92 27.74 68.60 1.90 41.82 16 26 H -0.25 -9.86 7.11 99.48 0.71 -9.15 16 27 H -0.28 -11.28 7.11 99.48 0.71 -10.57 16 28 H -0.23 -8.14 6.52 99.48 0.65 -7.50 16 29 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.06 0.95 8.13 -2.39 -0.02 0.93 16 31 H 0.06 0.93 7.45 -2.39 -0.02 0.91 16 32 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.05 1.71 7.75 -2.39 -0.02 1.69 16 36 H 0.41 8.81 8.18 -92.71 -0.76 8.06 16 37 H 0.21 2.86 8.06 -2.91 -0.02 2.83 16 38 H 0.10 -0.20 8.14 -2.39 -0.02 -0.22 16 39 H 0.11 -0.01 8.14 -2.39 -0.02 -0.03 16 40 H 0.10 0.06 8.14 -2.39 -0.02 0.04 16 41 H 0.43 -0.37 9.06 -74.06 -0.67 -1.04 16 42 H 0.34 11.02 8.17 -89.70 -0.73 10.29 16 43 H 0.11 3.02 8.05 -2.39 -0.02 3.00 16 44 H 0.08 1.99 7.44 -2.39 -0.02 1.97 16 45 H 0.39 15.77 5.76 -92.71 -0.53 15.23 16 46 H 0.28 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -93.98 395.30 -4.16 -98.14 By element: Atomic # 1 Polarization: 43.72 SS G_CDS: -1.70 Total: 42.03 kcal Atomic # 6 Polarization: 25.28 SS G_CDS: 8.87 Total: 34.15 kcal Atomic # 7 Polarization: -141.52 SS G_CDS: -11.93 Total: -153.44 kcal Atomic # 8 Polarization: -61.38 SS G_CDS: -1.30 Total: -62.69 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 1.90 Total: 41.82 kcal Total: -93.98 -4.16 -98.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753013815.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.161 kcal (2) G-P(sol) polarization free energy of solvation -93.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds