Wall clock time and date at job start Tue Mar 31 2020 23:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35843 * 117.00209 * 2 1 4 4 N 1.30814 * 126.05655 * 0.14455 * 3 2 1 5 5 N 1.39920 * 108.88161 * 180.26404 * 4 3 2 6 6 C 1.46500 * 125.69053 * 179.73002 * 5 4 3 7 7 C 1.34167 * 108.62014 * 359.74535 * 5 4 3 8 8 C 1.38129 * 107.50861 * 0.02562 * 7 5 4 9 9 C 1.47255 * 126.44856 * 179.97438 * 8 7 5 10 10 O 1.21623 * 120.00171 * 180.02562 * 9 8 7 11 11 N 1.34777 * 119.99800 * 359.75143 * 9 8 7 12 12 C 1.46499 * 120.00195 * 180.27780 * 11 9 8 13 13 H 1.08999 * 109.46621 * 324.99673 * 12 11 9 14 14 C 1.52998 * 109.47145 * 84.99285 * 12 11 9 15 15 C 1.52995 * 109.47290 * 204.99666 * 12 11 9 16 16 N 1.46902 * 109.46895 * 54.99783 * 15 12 11 17 17 C 1.46903 * 111.00131 * 180.02562 * 16 15 12 18 18 C 1.50693 * 109.47551 * 180.02562 * 17 16 15 19 19 O 1.21301 * 119.99980 * 359.97438 * 18 17 16 20 20 N 1.34777 * 120.00287 * 179.97438 * 18 17 16 21 21 C 1.37101 * 120.00014 * 179.97438 * 20 18 17 22 22 H 1.08000 * 120.00209 * 0.02562 * 21 20 18 23 23 C 1.38953 * 119.99803 * 180.02562 * 21 20 18 24 24 N 1.31413 * 119.99991 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99798 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47278 * 89.99947 * 25 23 21 27 27 H 1.48507 * 109.46884 * 209.99727 * 25 23 21 28 28 H 1.48495 * 109.47019 * 329.99623 * 25 23 21 29 29 H 1.08998 * 109.46928 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47433 * 300.00072 * 1 2 3 31 31 H 1.08997 * 109.46646 * 60.00093 * 1 2 3 32 32 H 1.09000 * 109.46844 * 270.01621 * 6 5 4 33 33 H 1.08999 * 109.47076 * 30.02198 * 6 5 4 34 34 H 1.08998 * 109.46856 * 150.01857 * 6 5 4 35 35 H 1.08000 * 126.24674 * 180.02562 * 7 5 4 36 36 H 0.97000 * 119.99736 * 0.27052 * 11 9 8 37 37 H 1.09007 * 109.46732 * 180.02562 * 14 12 11 38 38 H 1.08995 * 109.47315 * 300.00483 * 14 12 11 39 39 H 1.08999 * 109.47045 * 60.00647 * 14 12 11 40 40 H 1.09000 * 109.47530 * 174.99381 * 15 12 11 41 41 H 1.08999 * 109.47204 * 295.00095 * 15 12 11 42 42 H 1.00898 * 111.00446 * 56.04657 * 16 15 12 43 43 H 1.09006 * 109.46793 * 300.00373 * 17 16 15 44 44 H 1.08998 * 109.47042 * 59.99632 * 17 16 15 45 45 H 0.96997 * 119.99696 * 0.02562 * 20 18 17 46 46 H 0.96997 * 119.99817 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0458 1.2104 0.0000 4 7 1.4531 2.3765 0.0027 5 7 2.4282 3.3800 -0.0045 6 6 2.1704 4.8222 -0.0098 7 6 3.6386 2.8012 -0.0060 8 6 3.4452 1.4336 -0.0004 9 6 4.4956 0.4015 -0.0003 10 8 4.1912 -0.7760 0.0045 11 7 5.7943 0.7618 -0.0111 12 6 6.8393 -0.2649 -0.0172 13 1 6.5130 -1.1188 0.5766 14 6 7.1037 -0.7150 -1.4553 15 6 8.1240 0.3114 0.5813 16 7 7.8419 0.8523 1.9176 17 6 9.0552 1.4161 2.5243 18 6 8.7277 1.9594 3.8911 19 8 7.5947 1.8847 4.3180 20 7 9.6935 2.5283 4.6395 21 6 9.3953 3.0230 5.8829 22 1 8.3866 2.9565 6.2629 23 6 10.3910 3.6099 6.6542 24 7 11.6183 3.6913 6.1916 25 14 9.9849 4.2834 8.3486 26 1 10.1732 3.2159 9.3637 27 1 10.8848 5.4238 8.6567 28 1 8.5740 4.7457 8.3723 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 2.1032 5.1754 -1.0388 33 1 1.2321 5.0254 0.5063 34 1 2.9843 5.3385 0.4991 35 1 4.5904 3.3115 -0.0107 36 1 6.0370 1.7009 -0.0150 37 1 7.8809 -1.4793 -1.4597 38 1 6.1884 -1.1256 -1.8817 39 1 7.4299 0.1388 -2.0491 40 1 8.8738 -0.4759 0.6589 41 1 8.4987 1.1080 -0.0614 42 1 7.4328 0.1485 2.5137 43 1 9.8119 0.6367 2.6151 44 1 9.4360 2.2204 1.8949 45 1 10.5994 2.5883 4.2980 46 1 12.3135 4.1007 6.7301 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754278294.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:06 Heat of formation + Delta-G solvation = -23.792598 kcal Electronic energy + Delta-G solvation = -29046.472135 eV Core-core repulsion = 24780.823376 eV Total energy + Delta-G solvation = -4265.648759 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.61434 -39.27082 -38.37990 -38.25702 -36.44842 -34.21394 -33.60291 -33.08753 -31.55344 -31.19879 -29.80365 -28.07207 -27.55814 -26.40054 -25.01274 -23.45214 -22.88601 -21.43759 -20.83853 -20.13331 -19.24349 -18.17294 -17.86506 -17.05348 -16.48494 -16.41724 -16.03610 -15.63278 -15.20048 -15.16100 -14.96218 -14.75724 -14.56204 -14.21452 -13.97063 -13.86985 -13.49205 -13.21896 -13.06572 -13.00023 -12.86470 -12.53547 -12.34343 -12.08349 -11.93614 -11.74081 -11.52642 -11.47453 -11.36753 -11.05184 -11.00093 -10.84378 -10.40743 -10.23115 -9.69725 -9.52043 -9.30113 -8.90943 -8.56978 -8.46985 -8.08390 -7.97089 -6.43181 -3.83887 1.34798 1.99549 2.17946 3.05854 3.16628 3.25342 3.31149 3.42260 3.61720 3.90053 4.07527 4.19094 4.31399 4.48933 4.81423 4.84393 4.89503 5.04257 5.08501 5.09764 5.10440 5.16089 5.23471 5.25597 5.33506 5.37162 5.45281 5.51197 5.62797 5.64253 5.68919 5.79059 5.95386 6.03796 6.15161 6.25667 6.54779 6.68900 7.06770 7.17976 7.43718 7.53916 7.62750 7.79142 8.05202 8.53451 8.60192 9.16864 9.53258 10.04927 10.74582 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011130 B = 0.002461 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.076255 B =11375.274021 C =12847.588008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.267 6.267 3 C 0.315 3.685 4 N -0.355 5.355 5 N -0.349 5.349 6 C 0.099 3.901 7 C 0.129 3.871 8 C -0.289 4.289 9 C 0.597 3.403 10 O -0.541 6.541 11 N -0.708 5.708 12 C 0.148 3.852 13 H 0.086 0.914 14 C -0.161 4.161 15 C 0.048 3.952 16 N -0.667 5.667 17 C 0.050 3.950 18 C 0.440 3.560 19 O -0.581 6.581 20 N -0.565 5.565 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 H 0.101 0.899 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.191 0.809 36 H 0.400 0.600 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.042 0.958 41 H 0.076 0.924 42 H 0.352 0.648 43 H 0.043 0.957 44 H 0.085 0.915 45 H 0.392 0.608 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.583 -0.379 -18.258 22.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.169 6.169 3 C 0.110 3.890 4 N -0.196 5.196 5 N -0.130 5.130 6 C -0.041 4.041 7 C -0.024 4.024 8 C -0.304 4.304 9 C 0.384 3.616 10 O -0.418 6.418 11 N -0.359 5.359 12 C 0.043 3.957 13 H 0.105 0.895 14 C -0.220 4.220 15 C -0.082 4.082 16 N -0.300 5.300 17 C -0.082 4.082 18 C 0.226 3.774 19 O -0.465 6.465 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.756 3.244 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.119 0.881 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.111 0.889 34 H 0.115 0.885 35 H 0.208 0.792 36 H 0.234 0.766 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.061 0.939 41 H 0.095 0.905 42 H 0.171 0.829 43 H 0.061 0.939 44 H 0.104 0.896 45 H 0.225 0.775 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.689 -0.202 -18.092 23.305 hybrid contribution 1.690 -0.049 0.961 1.945 sum -12.998 -0.251 -17.130 21.505 Atomic orbital electron populations 1.23016 0.77927 1.03687 1.01899 1.86508 1.21602 1.20496 1.88301 1.20399 0.90141 0.85193 0.93304 1.77289 1.13281 0.94608 1.34380 1.47663 1.03189 1.06516 1.55614 1.22029 1.04810 0.73486 1.03816 1.23119 0.91277 0.92194 0.95764 1.19689 0.91765 0.92609 1.26362 1.17011 0.81528 0.87378 0.75649 1.90782 1.82318 1.18084 1.50651 1.45592 1.04629 1.10034 1.75685 1.20886 0.86861 0.91569 0.96389 0.89546 1.22141 1.02274 1.01358 0.96177 1.22315 0.95416 0.98665 0.91794 1.60062 1.27030 1.39788 1.03074 1.21676 0.91481 0.99321 0.95743 1.19829 0.86249 0.84557 0.86804 1.90542 1.21113 1.61599 1.73281 1.41868 1.10371 1.51999 1.15905 1.19696 0.97207 1.34211 0.91704 0.87966 1.25256 0.94834 0.97714 1.00154 1.69611 1.01097 1.45077 1.38585 0.85867 0.78468 0.78364 0.81653 1.20418 1.20931 1.19421 0.88096 0.92459 0.92615 0.90234 0.88869 0.88547 0.79169 0.76568 0.91758 0.91814 0.92441 0.93944 0.90538 0.82859 0.93877 0.89642 0.77489 0.91889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.70 101.05 1.08 1.39 16 2 O -0.27 -3.99 9.98 -24.61 -0.25 -4.23 16 3 C 0.31 4.66 7.85 -16.66 -0.13 4.52 16 4 N -0.36 -4.67 11.90 30.79 0.37 -4.31 16 5 N -0.35 -3.53 3.97 -67.60 -0.27 -3.80 16 6 C 0.10 0.53 11.44 59.85 0.68 1.21 16 7 C 0.13 1.31 10.98 -16.57 -0.18 1.12 16 8 C -0.29 -4.01 6.14 -104.95 -0.64 -4.65 16 9 C 0.60 9.05 7.77 -12.60 -0.10 8.95 16 10 O -0.54 -10.14 16.09 -0.10 0.00 -10.14 16 11 N -0.71 -8.59 4.79 -54.94 -0.26 -8.85 16 12 C 0.15 1.72 2.81 -67.93 -0.19 1.52 16 13 H 0.09 1.19 7.58 -51.93 -0.39 0.79 16 14 C -0.16 -1.55 9.48 37.16 0.35 -1.20 16 15 C 0.05 0.54 5.24 -3.83 -0.02 0.52 16 16 N -0.67 -10.06 5.85 -115.06 -0.67 -10.74 16 17 C 0.05 0.84 6.17 -4.98 -0.03 0.81 16 18 C 0.44 10.12 7.82 -10.99 -0.09 10.03 16 19 O -0.58 -15.57 15.78 5.54 0.09 -15.48 16 20 N -0.56 -14.04 5.29 -10.96 -0.06 -14.10 16 21 C -0.30 -8.24 9.68 -14.93 -0.14 -8.39 16 22 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.28 13.05 55.50 0.72 -23.55 16 25 Si 0.93 20.90 29.55 -169.99 -5.02 15.87 16 26 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 27 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 28 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 29 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.19 1.18 7.46 -52.49 -0.39 0.79 16 36 H 0.40 4.09 7.52 -40.82 -0.31 3.78 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.35 5.95 8.43 -39.29 -0.33 5.62 16 43 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 46 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 399.36 15.07 6.02 6.02 Total: -1.00 -37.31 399.36 -5.59 -42.90 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: -6.75 Total: 14.09 kcal Atomic # 6 Polarization: 15.82 SS G_CDS: 0.49 Total: 16.32 kcal Atomic # 7 Polarization: -65.18 SS G_CDS: -0.17 Total: -65.35 kcal Atomic # 8 Polarization: -29.69 SS G_CDS: -0.16 Total: -29.85 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -37.31 -5.59 -42.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754278294.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.108 kcal (2) G-P(sol) polarization free energy of solvation -37.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds