Wall clock time and date at job start Tue Mar 31 2020 23:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35843 * 117.00209 * 2 1 4 4 N 1.30814 * 126.05655 * 0.14455 * 3 2 1 5 5 N 1.39920 * 108.88161 * 180.26404 * 4 3 2 6 6 C 1.46500 * 125.69053 * 179.73002 * 5 4 3 7 7 C 1.34167 * 108.62014 * 359.74535 * 5 4 3 8 8 C 1.38129 * 107.50861 * 0.02562 * 7 5 4 9 9 C 1.47255 * 126.44856 * 179.97438 * 8 7 5 10 10 O 1.21623 * 120.00171 * 180.02562 * 9 8 7 11 11 N 1.34777 * 119.99800 * 359.75143 * 9 8 7 12 12 C 1.46499 * 120.00195 * 180.27780 * 11 9 8 13 13 H 1.08999 * 109.46621 * 324.99673 * 12 11 9 14 14 C 1.52998 * 109.47145 * 84.99285 * 12 11 9 15 15 C 1.52995 * 109.47290 * 204.99666 * 12 11 9 16 16 N 1.46902 * 109.46895 * 54.99783 * 15 12 11 17 17 C 1.46903 * 111.00131 * 180.02562 * 16 15 12 18 18 C 1.50693 * 109.47551 * 180.02562 * 17 16 15 19 19 O 1.21301 * 119.99980 * 359.97438 * 18 17 16 20 20 N 1.34777 * 120.00287 * 179.97438 * 18 17 16 21 21 C 1.37101 * 120.00014 * 179.97438 * 20 18 17 22 22 H 1.08000 * 120.00209 * 0.02562 * 21 20 18 23 23 C 1.38953 * 119.99803 * 180.02562 * 21 20 18 24 24 N 1.31413 * 119.99991 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99798 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47278 * 89.99947 * 25 23 21 27 27 H 1.48507 * 109.46884 * 209.99727 * 25 23 21 28 28 H 1.48495 * 109.47019 * 329.99623 * 25 23 21 29 29 H 1.08998 * 109.46928 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47433 * 300.00072 * 1 2 3 31 31 H 1.08997 * 109.46646 * 60.00093 * 1 2 3 32 32 H 1.09000 * 109.46844 * 270.01621 * 6 5 4 33 33 H 1.08999 * 109.47076 * 30.02198 * 6 5 4 34 34 H 1.08998 * 109.46856 * 150.01857 * 6 5 4 35 35 H 1.08000 * 126.24674 * 180.02562 * 7 5 4 36 36 H 0.97000 * 119.99736 * 0.27052 * 11 9 8 37 37 H 1.09007 * 109.46732 * 180.02562 * 14 12 11 38 38 H 1.08995 * 109.47315 * 300.00483 * 14 12 11 39 39 H 1.08999 * 109.47045 * 60.00647 * 14 12 11 40 40 H 1.09000 * 109.47530 * 174.99381 * 15 12 11 41 41 H 1.08999 * 109.47204 * 295.00095 * 15 12 11 42 42 H 1.00898 * 111.00446 * 56.04657 * 16 15 12 43 43 H 1.09006 * 109.46793 * 300.00373 * 17 16 15 44 44 H 1.08998 * 109.47042 * 59.99632 * 17 16 15 45 45 H 0.96997 * 119.99696 * 0.02562 * 20 18 17 46 46 H 0.96997 * 119.99817 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0458 1.2104 0.0000 4 7 1.4531 2.3765 0.0027 5 7 2.4282 3.3800 -0.0045 6 6 2.1704 4.8222 -0.0098 7 6 3.6386 2.8012 -0.0060 8 6 3.4452 1.4336 -0.0004 9 6 4.4956 0.4015 -0.0003 10 8 4.1912 -0.7760 0.0045 11 7 5.7943 0.7618 -0.0111 12 6 6.8393 -0.2649 -0.0172 13 1 6.5130 -1.1188 0.5766 14 6 7.1037 -0.7150 -1.4553 15 6 8.1240 0.3114 0.5813 16 7 7.8419 0.8523 1.9176 17 6 9.0552 1.4161 2.5243 18 6 8.7277 1.9594 3.8911 19 8 7.5947 1.8847 4.3180 20 7 9.6935 2.5283 4.6395 21 6 9.3953 3.0230 5.8829 22 1 8.3866 2.9565 6.2629 23 6 10.3910 3.6099 6.6542 24 7 11.6183 3.6913 6.1916 25 14 9.9849 4.2834 8.3486 26 1 10.1732 3.2159 9.3637 27 1 10.8848 5.4238 8.6567 28 1 8.5740 4.7457 8.3723 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 2.1032 5.1754 -1.0388 33 1 1.2321 5.0254 0.5063 34 1 2.9843 5.3385 0.4991 35 1 4.5904 3.3115 -0.0107 36 1 6.0370 1.7009 -0.0150 37 1 7.8809 -1.4793 -1.4597 38 1 6.1884 -1.1256 -1.8817 39 1 7.4299 0.1388 -2.0491 40 1 8.8738 -0.4759 0.6589 41 1 8.4987 1.1080 -0.0614 42 1 7.4328 0.1485 2.5137 43 1 9.8119 0.6367 2.6151 44 1 9.4360 2.2204 1.8949 45 1 10.5994 2.5883 4.2980 46 1 12.3135 4.1007 6.7301 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754278294.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:05 Heat of formation + Delta-G solvation = -56.800010 kcal Electronic energy + Delta-G solvation = -29047.903444 eV Core-core repulsion = 24780.823376 eV Total energy + Delta-G solvation = -4267.080068 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.50659 -40.39253 -40.00043 -39.32931 -37.62372 -35.98364 -35.01137 -33.85022 -33.22874 -32.50721 -30.72496 -28.89843 -28.83442 -27.14720 -26.64802 -24.69707 -23.90943 -22.31378 -21.75678 -21.17763 -20.97387 -19.87625 -19.08161 -18.02907 -17.79698 -17.35379 -17.28357 -16.79953 -16.41151 -16.18805 -16.05094 -16.00920 -15.90171 -15.57665 -15.19775 -15.03650 -14.88771 -14.48823 -14.04184 -13.91436 -13.58785 -13.49336 -13.48670 -13.23526 -13.04822 -12.92166 -12.86772 -12.74855 -12.62860 -12.39422 -12.16350 -12.11378 -11.93990 -11.76151 -11.48454 -10.86014 -10.31011 -10.23382 -9.98321 -9.94116 -9.45997 -9.28579 -8.44727 -5.92727 0.51087 1.13839 1.26976 1.38772 1.42819 1.54955 2.10070 2.19375 2.30453 2.48055 2.55763 2.96113 3.23218 3.41436 3.58148 3.79923 3.91632 4.23999 4.24273 4.29916 4.30947 4.37142 4.39413 4.46602 4.48682 4.55227 4.58968 4.63084 4.66662 4.73190 4.73777 4.76576 4.83913 4.88516 5.15944 5.35126 5.43169 5.69422 5.85991 5.92219 6.14305 6.15533 6.35937 6.50095 6.63689 6.81709 7.16007 7.48553 7.60660 8.16667 8.72603 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011130 B = 0.002461 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.076255 B =11375.274021 C =12847.588008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.298 6.298 3 C 0.290 3.710 4 N -0.372 5.372 5 N -0.343 5.343 6 C 0.088 3.912 7 C 0.152 3.848 8 C -0.330 4.330 9 C 0.593 3.407 10 O -0.591 6.591 11 N -0.695 5.695 12 C 0.148 3.852 13 H 0.057 0.943 14 C -0.151 4.151 15 C 0.056 3.944 16 N -0.677 5.677 17 C 0.066 3.934 18 C 0.438 3.562 19 O -0.624 6.624 20 N -0.574 5.574 21 C -0.331 4.331 22 H 0.076 0.924 23 C -0.012 4.012 24 N -0.920 5.920 25 Si 0.989 3.011 26 H -0.274 1.274 27 H -0.270 1.270 28 H -0.273 1.273 29 H 0.121 0.879 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.094 0.906 34 H 0.123 0.877 35 H 0.233 0.767 36 H 0.411 0.589 37 H 0.080 0.920 38 H 0.040 0.960 39 H 0.077 0.923 40 H 0.060 0.940 41 H 0.103 0.897 42 H 0.338 0.662 43 H 0.065 0.935 44 H 0.114 0.886 45 H 0.397 0.603 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.135 1.488 -19.248 22.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.201 6.201 3 C 0.086 3.914 4 N -0.212 5.212 5 N -0.123 5.123 6 C -0.051 4.051 7 C -0.002 4.002 8 C -0.346 4.346 9 C 0.381 3.619 10 O -0.472 6.472 11 N -0.346 5.346 12 C 0.042 3.958 13 H 0.076 0.924 14 C -0.210 4.210 15 C -0.073 4.073 16 N -0.309 5.309 17 C -0.066 4.066 18 C 0.225 3.775 19 O -0.510 6.510 20 N -0.212 5.212 21 C -0.461 4.461 22 H 0.094 0.906 23 C -0.212 4.212 24 N -0.561 5.561 25 Si 0.813 3.187 26 H -0.199 1.199 27 H -0.195 1.195 28 H -0.198 1.198 29 H 0.139 0.861 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.120 0.880 33 H 0.113 0.887 34 H 0.141 0.859 35 H 0.250 0.750 36 H 0.248 0.752 37 H 0.099 0.901 38 H 0.060 0.940 39 H 0.096 0.904 40 H 0.078 0.922 41 H 0.121 0.879 42 H 0.156 0.844 43 H 0.083 0.917 44 H 0.132 0.868 45 H 0.231 0.769 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.214 1.712 -19.116 23.301 hybrid contribution 1.191 -0.572 1.229 1.805 sum -12.022 1.139 -17.887 21.582 Atomic orbital electron populations 1.23220 0.76087 1.05197 1.02213 1.86447 1.23715 1.21477 1.88481 1.20730 0.90895 0.85477 0.94322 1.77218 1.14511 0.94785 1.34728 1.48148 1.02764 1.07653 1.53737 1.22489 1.06058 0.70773 1.05767 1.23643 0.92647 0.90927 0.93014 1.19843 0.91281 0.94094 1.29343 1.17295 0.82565 0.87029 0.74995 1.90739 1.83148 1.20085 1.53252 1.45509 1.03850 1.10797 1.74473 1.20928 0.86833 0.90655 0.97346 0.92434 1.22051 1.01761 1.02525 0.94653 1.22372 0.95234 0.99946 0.89723 1.60079 1.26543 1.40013 1.04262 1.21551 0.92440 1.00586 0.92014 1.20984 0.85123 0.82760 0.88602 1.90517 1.22928 1.62771 1.74823 1.41932 1.11014 1.52679 1.15567 1.19621 0.96561 1.36324 0.93598 0.90572 1.25979 0.94588 0.97394 1.03230 1.69662 1.01553 1.45117 1.39745 0.84982 0.78137 0.78079 0.77478 1.19935 1.19469 1.19821 0.86051 0.92471 0.91864 0.87975 0.88733 0.85868 0.75039 0.75227 0.90091 0.94049 0.90364 0.92225 0.87883 0.84443 0.91738 0.86800 0.76913 0.91351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.70 113.37 1.21 1.80 16 2 O -0.30 -9.50 9.98 -86.67 -0.87 -10.36 16 3 C 0.29 8.93 7.85 85.70 0.67 9.60 16 4 N -0.37 -9.80 11.90 -170.00 -2.02 -11.82 16 5 N -0.34 -6.39 3.97 -367.78 -1.46 -7.85 16 6 C 0.09 0.69 11.44 127.77 1.46 2.15 16 7 C 0.15 2.82 10.98 84.31 0.93 3.74 16 8 C -0.33 -9.30 6.14 -20.08 -0.12 -9.42 16 9 C 0.59 18.50 7.77 86.61 0.67 19.18 16 10 O -0.59 -23.56 16.09 1.02 0.02 -23.55 16 11 N -0.70 -16.31 4.79 -445.98 -2.14 -18.45 16 12 C 0.15 3.26 2.81 44.99 0.13 3.38 16 13 H 0.06 1.62 7.58 -2.39 -0.02 1.61 16 14 C -0.15 -2.67 9.48 71.98 0.68 -1.98 16 15 C 0.06 1.08 5.24 86.30 0.45 1.53 16 16 N -0.68 -19.13 5.85 -517.94 -3.03 -22.16 16 17 C 0.07 2.03 6.17 85.55 0.53 2.56 16 18 C 0.44 19.88 7.82 87.65 0.69 20.57 16 19 O -0.62 -33.83 15.78 -3.09 -0.05 -33.88 16 20 N -0.57 -28.47 5.29 -306.98 -1.62 -30.10 16 21 C -0.33 -18.49 9.68 84.04 0.81 -17.68 16 22 H 0.08 4.57 7.16 -2.91 -0.02 4.55 16 23 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 24 N -0.92 -48.63 13.05 21.66 0.28 -48.35 16 25 Si 0.99 42.40 29.55 68.60 2.03 44.42 16 26 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 27 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 28 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 29 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.06 1.17 8.14 -2.39 -0.02 1.16 16 31 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16 35 H 0.23 2.02 7.46 -2.91 -0.02 2.00 16 36 H 0.41 7.49 7.52 -92.71 -0.70 6.79 16 37 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 38 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.34 11.28 8.43 -89.70 -0.76 10.53 16 43 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 44 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 45 H 0.40 18.54 7.90 -92.71 -0.73 17.81 16 46 H 0.28 13.73 8.31 -92.71 -0.77 12.96 16 Total: -1.00 -85.33 399.36 -1.43 -86.76 By element: Atomic # 1 Polarization: 41.22 SS G_CDS: -1.15 Total: 40.08 kcal Atomic # 6 Polarization: 26.67 SS G_CDS: 8.58 Total: 35.25 kcal Atomic # 7 Polarization: -128.73 SS G_CDS: -9.99 Total: -138.73 kcal Atomic # 8 Polarization: -66.89 SS G_CDS: -0.90 Total: -67.79 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.42 kcal Total: -85.33 -1.43 -86.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754278294.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.963 kcal (2) G-P(sol) polarization free energy of solvation -85.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds