Wall clock time and date at job start Tue Mar 31 2020 23:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.46958 * 2 1 4 4 N 1.46507 * 109.47455 * 119.99703 * 2 1 3 5 5 C 1.36936 * 120.00002 * 275.00542 * 4 2 1 6 6 H 1.08006 * 119.99679 * 359.97438 * 5 4 2 7 7 C 1.38807 * 120.00074 * 179.97438 * 5 4 2 8 8 N 1.31625 * 120.00042 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99994 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47034 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.46920 * 120.00080 * 9 7 5 12 12 H 1.48500 * 109.46695 * 239.99782 * 9 7 5 13 13 C 1.52998 * 109.47566 * 239.99844 * 2 1 3 14 14 H 1.09008 * 110.88300 * 296.12036 * 13 2 1 15 15 C 1.55153 * 111.00426 * 59.99614 * 13 2 1 16 16 C 1.54324 * 102.94445 * 153.61615 * 15 13 2 17 17 N 1.47016 * 107.26903 * 337.81002 * 16 15 13 18 18 C 1.34776 * 125.64850 * 178.90287 * 17 16 15 19 19 O 1.21566 * 120.00449 * 185.43888 * 18 17 16 20 20 C 1.47777 * 120.00219 * 5.43876 * 18 17 16 21 21 C 1.40654 * 119.69791 * 41.06076 * 20 18 17 22 22 C 1.35844 * 120.87748 * 179.97438 * 21 20 18 23 23 C 1.40392 * 119.84793 * 359.97438 * 22 21 20 24 24 C 1.40632 * 121.98413 * 179.71937 * 23 22 21 25 25 C 1.36218 * 118.73178 * 179.83194 * 24 23 22 26 26 N 1.32595 * 121.90550 * 0.47301 * 25 24 23 27 27 C 1.31243 * 122.73572 * 359.75171 * 26 25 24 28 28 C 1.40544 * 119.88532 * 0.02562 * 27 26 25 29 29 C 1.38568 * 119.70425 * 221.04471 * 20 18 17 30 30 C 1.47425 * 108.70794 * 359.16909 * 17 16 15 31 31 H 1.08998 * 109.47401 * 60.00243 * 1 2 3 32 32 H 1.09005 * 109.46958 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47160 * 299.99727 * 1 2 3 34 34 H 0.96996 * 119.99756 * 94.99880 * 4 2 1 35 35 H 0.96999 * 119.99880 * 179.97438 * 8 7 5 36 36 H 1.09000 * 110.72205 * 35.25235 * 15 13 2 37 37 H 1.09000 * 110.87464 * 272.05380 * 15 13 2 38 38 H 1.08999 * 109.88491 * 218.39252 * 16 15 13 39 39 H 1.09002 * 110.01121 * 97.30123 * 16 15 13 40 40 H 1.07998 * 119.56010 * 0.02562 * 21 20 18 41 41 H 1.07999 * 120.07502 * 180.02562 * 22 21 20 42 42 H 1.08003 * 120.63042 * 0.05671 * 24 23 22 43 43 H 1.08005 * 119.04886 * 180.20711 * 25 24 23 44 44 H 1.07998 * 120.05499 * 180.02562 * 27 26 25 45 45 H 1.07998 * 120.34027 * 0.04253 * 29 20 18 46 46 H 1.08989 * 110.37383 * 142.73968 * 30 17 16 47 47 H 1.09005 * 110.36234 * 265.06659 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1491 -0.0074 2.3758 6 1 1.8925 1.0406 2.4241 7 6 2.6114 -0.6618 3.5093 8 7 2.9236 -1.9391 3.4505 9 14 2.7903 0.2704 5.1182 10 1 2.3774 1.6830 4.9204 11 1 1.9293 -0.3575 6.1524 12 1 4.2073 0.2265 5.5606 13 6 2.0400 -0.7213 -1.2492 14 1 1.7469 -1.7711 -1.2386 15 6 1.5426 -0.0179 -2.5395 16 6 2.6245 -0.3901 -3.5752 17 7 3.8422 -0.7379 -2.8284 18 6 5.0086 -1.1398 -3.3711 19 8 5.9221 -1.4969 -2.6530 20 6 5.1771 -1.1464 -4.8392 21 6 4.6694 -0.0804 -5.6037 22 6 4.8113 -0.0617 -6.9546 23 6 5.4728 -1.1171 -7.6023 24 6 5.6399 -1.1465 -8.9984 25 6 6.2957 -2.2015 -9.5574 26 7 6.7696 -3.1998 -8.8247 27 6 6.6470 -3.2423 -7.5187 28 6 5.9902 -2.1997 -6.8428 29 6 5.8340 -2.2024 -5.4503 30 6 3.5743 -0.5804 -1.3873 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 2.2491 -1.6317 1.1527 35 1 3.2470 -2.3963 4.2425 36 1 1.4995 1.0620 -2.3980 37 1 0.5696 -0.4048 -2.8423 38 1 2.8204 0.4600 -4.2286 39 1 2.2960 -1.2444 -4.1672 40 1 4.1608 0.7344 -5.1100 41 1 4.4168 0.7635 -7.5289 42 1 5.2586 -0.3460 -9.6152 43 1 6.4298 -2.2276 -10.6287 44 1 7.0502 -4.0769 -6.9644 45 1 6.2218 -3.0189 -4.8593 46 1 4.0801 -1.3614 -0.8198 47 1 3.8945 0.4046 -1.0474 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754803707.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:00 Heat of formation + Delta-G solvation = 35.934374 kcal Electronic energy + Delta-G solvation = -28320.193039 eV Core-core repulsion = 24467.983499 eV Total energy + Delta-G solvation = -3852.209540 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.27695 -40.06542 -38.06872 -37.13955 -35.25159 -33.38122 -32.64367 -31.70682 -30.55914 -30.05060 -28.71883 -28.15651 -25.28556 -24.41409 -23.95336 -23.10935 -22.59472 -21.57208 -20.02515 -19.69285 -18.46223 -17.79360 -17.14443 -17.01757 -16.31607 -15.96087 -15.51797 -15.14027 -14.91440 -14.60245 -14.47723 -14.28428 -13.94360 -13.80189 -13.66942 -13.63690 -13.05977 -12.83040 -12.74327 -12.38500 -12.34409 -12.14701 -11.95699 -11.71319 -11.59195 -11.38873 -10.90115 -10.79883 -10.62020 -10.59735 -10.56621 -10.20244 -10.08348 -9.90373 -9.78574 -9.64061 -9.48259 -8.92410 -8.61448 -8.45432 -6.96906 -5.76186 -3.05388 -0.12025 0.36281 1.45002 2.30546 2.85053 3.06204 3.43662 3.48964 3.51537 3.68079 4.00078 4.11743 4.22154 4.27768 4.43259 4.55483 4.62412 4.65267 4.70640 4.74705 4.94603 4.95431 5.18675 5.27508 5.29103 5.31030 5.45938 5.50566 5.54406 5.56772 5.63017 5.84745 5.85675 5.87984 5.91307 5.93227 6.00995 6.13052 6.19829 6.25949 6.29346 6.36548 6.37731 6.51538 6.60504 6.82874 7.04709 7.50812 7.56415 7.70366 8.10010 8.41760 9.53262 10.09810 10.44096 11.46323 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022807 B = 0.002173 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.413612 B =12881.316065 C =13614.832566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.185 3.815 3 H 0.049 0.951 4 N -0.724 5.724 5 C -0.238 4.238 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.931 5.931 9 Si 0.905 3.095 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.101 4.101 14 H 0.081 0.919 15 C -0.124 4.124 16 C 0.095 3.905 17 N -0.612 5.612 18 C 0.568 3.432 19 O -0.528 6.528 20 C -0.120 4.120 21 C -0.073 4.073 22 C -0.117 4.117 23 C -0.012 4.012 24 C -0.159 4.159 25 C 0.081 3.919 26 N -0.492 5.492 27 C 0.158 3.842 28 C -0.120 4.120 29 C -0.027 4.027 30 C 0.118 3.882 31 H 0.037 0.963 32 H 0.046 0.954 33 H 0.053 0.947 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.154 0.846 44 H 0.167 0.833 45 H 0.145 0.855 46 H 0.086 0.914 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.697 3.082 -27.394 27.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.075 3.925 3 H 0.067 0.933 4 N -0.366 5.366 5 C -0.369 4.369 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.579 5.579 9 Si 0.736 3.264 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.219 1.219 13 C -0.121 4.121 14 H 0.100 0.900 15 C -0.163 4.163 16 C -0.027 4.027 17 N -0.345 5.345 18 C 0.356 3.644 19 O -0.405 6.405 20 C -0.123 4.123 21 C -0.092 4.092 22 C -0.135 4.135 23 C -0.017 4.017 24 C -0.179 4.179 25 C -0.062 4.062 26 N -0.200 5.200 27 C -0.014 4.014 28 C -0.122 4.122 29 C -0.048 4.048 30 C -0.003 4.003 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.217 0.783 35 H 0.064 0.936 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.155 0.845 41 H 0.155 0.845 42 H 0.157 0.843 43 H 0.171 0.829 44 H 0.184 0.816 45 H 0.163 0.837 46 H 0.105 0.895 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.683 2.392 -27.461 27.616 hybrid contribution -0.378 0.909 1.348 1.669 sum 1.305 3.301 -26.112 26.353 Atomic orbital electron populations 1.22444 0.99069 1.00906 0.99996 1.20144 0.91925 0.95132 0.85334 0.93314 1.42431 1.78148 1.10723 1.05266 1.19237 1.36591 0.93827 0.87255 0.91171 1.24740 1.02150 0.95960 0.98058 1.69668 1.50810 1.08630 1.28784 0.86154 0.77329 0.78768 0.84150 1.20601 1.21953 1.21884 1.22628 0.93619 1.00831 0.95048 0.90021 1.22694 0.97567 1.01594 0.94431 1.22279 0.85111 1.00056 0.95295 1.48492 1.11006 1.65946 1.09060 1.17875 0.81735 0.77661 0.87160 1.90849 1.40119 1.47222 1.62301 1.19953 1.02044 0.96891 0.93435 1.21224 0.96631 0.97493 0.93869 1.20859 0.99999 0.98163 0.94472 1.18282 0.95780 0.93941 0.93678 1.21925 1.01392 1.00632 0.93961 1.22257 0.94139 0.89513 1.00266 1.67490 1.18681 1.26231 1.07586 1.23338 0.92120 0.95857 0.90077 1.18979 1.02034 0.96861 0.94306 1.21378 0.93449 0.97348 0.92594 1.22285 0.96119 1.02899 0.78984 0.94372 0.93505 0.92759 0.78258 0.93555 0.90271 0.89952 0.91325 0.91480 0.84458 0.84532 0.84283 0.82904 0.81565 0.83748 0.89542 0.90921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 9.27 37.15 0.34 -2.35 16 2 C 0.18 3.35 2.43 -67.93 -0.17 3.18 16 3 H 0.05 0.90 8.01 -51.93 -0.42 0.49 16 4 N -0.72 -17.29 4.97 -53.42 -0.27 -17.56 16 5 C -0.24 -6.42 9.93 -15.06 -0.15 -6.57 16 6 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 7 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 8 N -0.93 -28.00 13.06 55.49 0.72 -27.27 16 9 Si 0.90 22.33 29.55 -169.99 -5.02 17.31 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 13 C -0.10 -1.50 2.64 -88.59 -0.23 -1.73 16 14 H 0.08 1.28 8.14 -51.92 -0.42 0.85 16 15 C -0.12 -1.31 5.29 -24.90 -0.13 -1.45 16 16 C 0.10 0.95 5.82 -3.07 -0.02 0.94 16 17 N -0.61 -8.44 3.33 -171.80 -0.57 -9.02 16 18 C 0.57 8.51 7.42 -12.36 -0.09 8.42 16 19 O -0.53 -10.15 17.15 5.31 0.09 -10.06 16 20 C -0.12 -1.39 5.46 -104.96 -0.57 -1.96 16 21 C -0.07 -0.65 8.34 -39.53 -0.33 -0.98 16 22 C -0.12 -0.89 9.77 -39.63 -0.39 -1.28 16 23 C -0.01 -0.10 5.75 -106.74 -0.61 -0.72 16 24 C -0.16 -1.14 9.87 -39.41 -0.39 -1.53 16 25 C 0.08 0.64 11.07 -17.95 -0.20 0.44 16 26 N -0.49 -4.81 10.30 -13.12 -0.14 -4.95 16 27 C 0.16 1.42 11.05 -16.93 -0.19 1.23 16 28 C -0.12 -1.16 5.74 -106.88 -0.61 -1.77 16 29 C -0.03 -0.29 9.41 -38.75 -0.36 -0.65 16 30 C 0.12 1.94 6.26 -2.65 -0.02 1.92 16 31 H 0.04 0.50 7.28 -51.93 -0.38 0.12 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.38 9.90 7.80 -40.82 -0.32 9.59 16 35 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.08 0.78 8.04 -51.93 -0.42 0.37 16 37 H 0.08 0.75 8.11 -51.93 -0.42 0.32 16 38 H 0.07 0.53 5.48 -51.93 -0.28 0.25 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.14 1.03 5.71 -52.49 -0.30 0.73 16 41 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 42 H 0.14 0.60 8.06 -52.48 -0.42 0.18 16 43 H 0.15 0.79 8.06 -52.48 -0.42 0.36 16 44 H 0.17 1.07 8.06 -52.49 -0.42 0.65 16 45 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 46 H 0.09 1.70 7.99 -51.94 -0.41 1.28 16 47 H 0.07 1.24 7.98 -51.93 -0.41 0.83 16 LS Contribution 386.07 15.07 5.82 5.82 Total: -1.00 -33.87 386.07 -10.29 -44.17 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -6.72 Total: 6.87 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -4.21 Total: -5.31 kcal Atomic # 7 Polarization: -58.54 SS G_CDS: -0.25 Total: -58.79 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.09 Total: -10.06 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.87 -10.29 -44.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754803707.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.101 kcal (2) G-P(sol) polarization free energy of solvation -33.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds