Wall clock time and date at job start Tue Mar 31 2020 23:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.46958 * 2 1 4 4 N 1.46507 * 109.47455 * 119.99703 * 2 1 3 5 5 C 1.36936 * 120.00002 * 275.00542 * 4 2 1 6 6 H 1.08006 * 119.99679 * 359.97438 * 5 4 2 7 7 C 1.38807 * 120.00074 * 179.97438 * 5 4 2 8 8 N 1.31625 * 120.00042 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99994 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47034 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.46920 * 120.00080 * 9 7 5 12 12 H 1.48500 * 109.46695 * 239.99782 * 9 7 5 13 13 C 1.52998 * 109.47566 * 239.99844 * 2 1 3 14 14 H 1.09008 * 110.88300 * 296.12036 * 13 2 1 15 15 C 1.55153 * 111.00426 * 59.99614 * 13 2 1 16 16 C 1.54324 * 102.94445 * 153.61615 * 15 13 2 17 17 N 1.47016 * 107.26903 * 337.81002 * 16 15 13 18 18 C 1.34776 * 125.64850 * 178.90287 * 17 16 15 19 19 O 1.21566 * 120.00449 * 185.43888 * 18 17 16 20 20 C 1.47777 * 120.00219 * 5.43876 * 18 17 16 21 21 C 1.40654 * 119.69791 * 41.06076 * 20 18 17 22 22 C 1.35844 * 120.87748 * 179.97438 * 21 20 18 23 23 C 1.40392 * 119.84793 * 359.97438 * 22 21 20 24 24 C 1.40632 * 121.98413 * 179.71937 * 23 22 21 25 25 C 1.36218 * 118.73178 * 179.83194 * 24 23 22 26 26 N 1.32595 * 121.90550 * 0.47301 * 25 24 23 27 27 C 1.31243 * 122.73572 * 359.75171 * 26 25 24 28 28 C 1.40544 * 119.88532 * 0.02562 * 27 26 25 29 29 C 1.38568 * 119.70425 * 221.04471 * 20 18 17 30 30 C 1.47425 * 108.70794 * 359.16909 * 17 16 15 31 31 H 1.08998 * 109.47401 * 60.00243 * 1 2 3 32 32 H 1.09005 * 109.46958 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47160 * 299.99727 * 1 2 3 34 34 H 0.96996 * 119.99756 * 94.99880 * 4 2 1 35 35 H 0.96999 * 119.99880 * 179.97438 * 8 7 5 36 36 H 1.09000 * 110.72205 * 35.25235 * 15 13 2 37 37 H 1.09000 * 110.87464 * 272.05380 * 15 13 2 38 38 H 1.08999 * 109.88491 * 218.39252 * 16 15 13 39 39 H 1.09002 * 110.01121 * 97.30123 * 16 15 13 40 40 H 1.07998 * 119.56010 * 0.02562 * 21 20 18 41 41 H 1.07999 * 120.07502 * 180.02562 * 22 21 20 42 42 H 1.08003 * 120.63042 * 0.05671 * 24 23 22 43 43 H 1.08005 * 119.04886 * 180.20711 * 25 24 23 44 44 H 1.07998 * 120.05499 * 180.02562 * 27 26 25 45 45 H 1.07998 * 120.34027 * 0.04253 * 29 20 18 46 46 H 1.08989 * 110.37383 * 142.73968 * 30 17 16 47 47 H 1.09005 * 110.36234 * 265.06659 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1491 -0.0074 2.3758 6 1 1.8925 1.0406 2.4241 7 6 2.6114 -0.6618 3.5093 8 7 2.9236 -1.9391 3.4505 9 14 2.7903 0.2704 5.1182 10 1 2.3774 1.6830 4.9204 11 1 1.9293 -0.3575 6.1524 12 1 4.2073 0.2265 5.5606 13 6 2.0400 -0.7213 -1.2492 14 1 1.7469 -1.7711 -1.2386 15 6 1.5426 -0.0179 -2.5395 16 6 2.6245 -0.3901 -3.5752 17 7 3.8422 -0.7379 -2.8284 18 6 5.0086 -1.1398 -3.3711 19 8 5.9221 -1.4969 -2.6530 20 6 5.1771 -1.1464 -4.8392 21 6 4.6694 -0.0804 -5.6037 22 6 4.8113 -0.0617 -6.9546 23 6 5.4728 -1.1171 -7.6023 24 6 5.6399 -1.1465 -8.9984 25 6 6.2957 -2.2015 -9.5574 26 7 6.7696 -3.1998 -8.8247 27 6 6.6470 -3.2423 -7.5187 28 6 5.9902 -2.1997 -6.8428 29 6 5.8340 -2.2024 -5.4503 30 6 3.5743 -0.5804 -1.3873 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 2.2491 -1.6317 1.1527 35 1 3.2470 -2.3963 4.2425 36 1 1.4995 1.0620 -2.3980 37 1 0.5696 -0.4048 -2.8423 38 1 2.8204 0.4600 -4.2286 39 1 2.2960 -1.2444 -4.1672 40 1 4.1608 0.7344 -5.1100 41 1 4.4168 0.7635 -7.5289 42 1 5.2586 -0.3460 -9.6152 43 1 6.4298 -2.2276 -10.6287 44 1 7.0502 -4.0769 -6.9644 45 1 6.2218 -3.0189 -4.8593 46 1 4.0801 -1.3614 -0.8198 47 1 3.8945 0.4046 -1.0474 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754803707.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:59 Heat of formation + Delta-G solvation = 14.513507 kcal Electronic energy + Delta-G solvation = -28321.121918 eV Core-core repulsion = 24467.983499 eV Total energy + Delta-G solvation = -3853.138418 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.01505 -41.08674 -39.22096 -37.98975 -36.81979 -34.34938 -34.02512 -32.67734 -31.81894 -30.78440 -30.04035 -29.56572 -26.26519 -25.80181 -25.08080 -24.04252 -23.27967 -22.88043 -21.07816 -20.99103 -19.42936 -18.96018 -18.50375 -17.92560 -17.30515 -17.11457 -16.53285 -16.17062 -16.07342 -15.74247 -15.43765 -15.27001 -15.11871 -15.01324 -14.57375 -14.49782 -14.35481 -14.12750 -13.92206 -13.58045 -13.43754 -13.13803 -13.07998 -12.91459 -12.81692 -12.62160 -12.40973 -12.34914 -12.13544 -12.00157 -11.67060 -11.52754 -11.38188 -11.26763 -11.14444 -10.94330 -10.51224 -10.20915 -9.73150 -9.11574 -8.98296 -7.92403 -5.19764 -0.79570 -0.31708 0.77680 1.42911 1.45873 1.47021 1.56333 1.80695 2.14849 2.56612 3.02218 3.26138 3.41868 3.44628 3.56724 3.58051 3.66182 3.73238 3.82175 3.86478 3.98513 4.04583 4.16124 4.26074 4.36138 4.43909 4.56678 4.63180 4.64963 4.66358 4.68188 4.80627 4.83489 4.88920 4.90275 4.92855 4.98301 5.10844 5.12222 5.19809 5.24062 5.30158 5.35118 5.42912 5.54884 5.60481 5.66819 5.71471 6.30131 6.41538 6.94985 6.95533 7.35701 8.14060 8.34423 9.31517 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022807 B = 0.002173 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.413612 B =12881.316065 C =13614.832566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.179 3.821 3 H 0.049 0.951 4 N -0.739 5.739 5 C -0.228 4.228 6 H 0.078 0.922 7 C -0.082 4.082 8 N -0.972 5.972 9 Si 0.967 3.033 10 H -0.263 1.263 11 H -0.296 1.296 12 H -0.300 1.300 13 C -0.093 4.093 14 H 0.071 0.929 15 C -0.112 4.112 16 C 0.092 3.908 17 N -0.609 5.609 18 C 0.562 3.438 19 O -0.588 6.588 20 C -0.132 4.132 21 C -0.079 4.079 22 C -0.098 4.098 23 C -0.025 4.025 24 C -0.148 4.148 25 C 0.068 3.932 26 N -0.513 5.513 27 C 0.145 3.855 28 C -0.130 4.130 29 C -0.037 4.037 30 C 0.122 3.878 31 H 0.083 0.917 32 H 0.040 0.960 33 H 0.033 0.967 34 H 0.369 0.631 35 H 0.248 0.752 36 H 0.096 0.904 37 H 0.110 0.890 38 H 0.104 0.896 39 H 0.082 0.918 40 H 0.156 0.844 41 H 0.176 0.824 42 H 0.176 0.824 43 H 0.179 0.821 44 H 0.178 0.822 45 H 0.135 0.865 46 H 0.037 0.963 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.355 5.867 -31.240 31.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.071 3.929 3 H 0.067 0.933 4 N -0.379 5.379 5 C -0.360 4.360 6 H 0.096 0.904 7 C -0.274 4.274 8 N -0.624 5.624 9 Si 0.797 3.203 10 H -0.187 1.187 11 H -0.223 1.223 12 H -0.227 1.227 13 C -0.113 4.113 14 H 0.089 0.911 15 C -0.150 4.150 16 C -0.029 4.029 17 N -0.341 5.341 18 C 0.352 3.648 19 O -0.469 6.469 20 C -0.135 4.135 21 C -0.098 4.098 22 C -0.115 4.115 23 C -0.031 4.031 24 C -0.167 4.167 25 C -0.075 4.075 26 N -0.222 5.222 27 C -0.026 4.026 28 C -0.132 4.132 29 C -0.058 4.058 30 C -0.001 4.001 31 H 0.102 0.898 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.200 0.800 35 H 0.056 0.944 36 H 0.114 0.886 37 H 0.129 0.871 38 H 0.122 0.878 39 H 0.100 0.900 40 H 0.173 0.827 41 H 0.194 0.806 42 H 0.193 0.807 43 H 0.196 0.804 44 H 0.195 0.805 45 H 0.153 0.847 46 H 0.056 0.944 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.434 5.234 -31.368 31.805 hybrid contribution 0.274 0.058 2.369 2.385 sum -0.160 5.292 -29.000 29.479 Atomic orbital electron populations 1.22276 0.96852 1.00903 1.01220 1.20428 0.93256 0.94790 0.84467 0.93338 1.42691 1.78447 1.10240 1.06475 1.19643 1.33999 0.94128 0.88197 0.90389 1.25532 1.03516 0.96861 1.01487 1.69833 1.53118 1.10294 1.29126 0.85147 0.76485 0.78415 0.80220 1.18688 1.22304 1.22729 1.22435 0.92251 1.00522 0.96088 0.91076 1.22742 0.98829 1.02147 0.91244 1.22594 0.82970 1.02096 0.95215 1.48551 1.12094 1.65258 1.08154 1.18548 0.81150 0.76462 0.88635 1.90807 1.42158 1.49955 1.64020 1.19755 1.03999 0.98664 0.91088 1.21326 0.97123 0.96953 0.94391 1.21240 0.98101 0.98277 0.93923 1.18656 0.95793 0.93926 0.94683 1.22289 1.00039 1.01033 0.93354 1.22782 0.93888 0.89307 1.01477 1.67517 1.19338 1.27467 1.07834 1.23554 0.92464 0.96375 0.90223 1.19043 1.02635 0.97816 0.93733 1.21367 0.93735 0.97322 0.93329 1.22013 0.97100 1.00400 0.80563 0.89800 0.94130 0.94789 0.79970 0.94366 0.88595 0.87114 0.87840 0.89980 0.82699 0.80621 0.80653 0.80384 0.80502 0.84711 0.94387 0.92069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.69 9.27 71.98 0.67 -4.02 16 2 C 0.18 6.37 2.43 44.99 0.11 6.47 16 3 H 0.05 1.74 8.01 -2.38 -0.02 1.72 16 4 N -0.74 -36.31 4.97 -322.93 -1.61 -37.92 16 5 C -0.23 -12.49 9.93 84.03 0.83 -11.65 16 6 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 7 C -0.08 -4.79 5.50 84.86 0.47 -4.32 16 8 N -0.97 -61.05 13.06 21.65 0.28 -60.77 16 9 Si 0.97 47.00 29.55 68.60 2.03 49.03 16 10 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 11 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 12 H -0.30 -14.80 7.11 99.48 0.71 -14.10 16 13 C -0.09 -2.70 2.64 -9.48 -0.03 -2.73 16 14 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 15 C -0.11 -1.92 5.29 31.78 0.17 -1.75 16 16 C 0.09 1.54 5.82 86.73 0.50 2.05 16 17 N -0.61 -16.81 3.33 -815.72 -2.71 -19.52 16 18 C 0.56 17.56 7.42 86.77 0.64 18.20 16 19 O -0.59 -24.61 17.15 -3.93 -0.07 -24.68 16 20 C -0.13 -3.00 5.46 -20.09 -0.11 -3.11 16 21 C -0.08 -1.17 8.34 22.30 0.19 -0.98 16 22 C -0.10 -1.07 9.77 22.24 0.22 -0.86 16 23 C -0.03 -0.37 5.75 -21.24 -0.12 -0.49 16 24 C -0.15 -1.54 9.87 22.38 0.22 -1.31 16 25 C 0.07 0.88 11.07 84.11 0.93 1.81 16 26 N -0.51 -9.44 10.30 -195.41 -2.01 -11.45 16 27 C 0.14 2.57 11.05 85.34 0.94 3.52 16 28 C -0.13 -2.42 5.74 -21.32 -0.12 -2.54 16 29 C -0.04 -0.80 9.41 22.81 0.21 -0.58 16 30 C 0.12 4.19 6.26 86.78 0.54 4.73 16 31 H 0.08 1.81 7.28 -2.39 -0.02 1.80 16 32 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 33 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.37 20.08 7.80 -92.71 -0.72 19.36 16 35 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 36 H 0.10 1.41 8.04 -2.39 -0.02 1.39 16 37 H 0.11 1.39 8.11 -2.39 -0.02 1.37 16 38 H 0.10 1.09 5.48 -2.39 -0.01 1.07 16 39 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.16 1.66 5.71 -2.91 -0.02 1.64 16 41 H 0.18 0.56 8.06 -2.91 -0.02 0.53 16 42 H 0.18 0.49 8.06 -2.91 -0.02 0.47 16 43 H 0.18 1.24 8.06 -2.91 -0.02 1.22 16 44 H 0.18 2.44 8.06 -2.91 -0.02 2.41 16 45 H 0.14 3.02 8.06 -2.91 -0.02 3.00 16 46 H 0.04 1.65 7.99 -2.39 -0.02 1.63 16 47 H 0.06 2.20 7.98 -2.38 -0.02 2.18 16 Total: -1.00 -80.13 386.07 2.45 -77.68 By element: Atomic # 1 Polarization: 24.93 SS G_CDS: 0.27 Total: 25.20 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: 6.27 Total: 2.43 kcal Atomic # 7 Polarization: -123.61 SS G_CDS: -6.05 Total: -129.66 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.07 Total: -24.68 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.03 kcal Total: -80.13 2.45 -77.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754803707.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.197 kcal (2) G-P(sol) polarization free energy of solvation -80.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds