Wall clock time and date at job start Tue Mar 31 2020 22:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 110.64130 * 2 1 4 4 C 1.54321 * 110.72124 * 123.14792 * 2 1 3 5 5 N 1.47022 * 107.27244 * 140.55332 * 4 2 1 6 6 C 1.34782 * 125.64957 * 181.01802 * 5 4 2 7 7 O 1.21591 * 120.00023 * 174.87588 * 6 5 4 8 8 C 1.47553 * 119.99658 * 354.60945 * 6 5 4 9 9 C 1.38693 * 120.38766 * 313.44839 * 8 6 5 10 10 C 1.38962 * 120.53626 * 179.97438 * 9 8 6 11 11 C 1.36209 * 121.24001 * 0.02562 * 10 9 8 12 12 C 1.40714 * 120.20158 * 359.97438 * 11 10 9 13 13 N 1.33684 * 120.94352 * 179.97438 * 12 11 10 14 14 C 1.31065 * 121.34275 * 180.02562 * 13 12 11 15 15 C 1.39343 * 121.70488 * 359.97438 * 14 13 12 16 16 C 1.36677 * 119.86999 * 0.02562 * 15 14 13 17 17 C 1.40472 * 118.16850 * 359.77004 * 16 15 14 18 18 C 1.47423 * 108.70323 * 1.28842 * 5 4 2 19 19 C 1.55130 * 104.72006 * 335.55093 * 18 5 4 20 20 H 1.09002 * 111.22524 * 279.17492 * 19 18 5 21 21 C 1.53001 * 110.90648 * 155.27847 * 19 18 5 22 22 N 1.46502 * 109.47193 * 72.97405 * 21 19 18 23 23 C 1.36940 * 119.99943 * 179.97438 * 22 21 19 24 24 H 1.07997 * 119.99767 * 0.02562 * 23 22 21 25 25 C 1.38809 * 120.00011 * 179.97438 * 23 22 21 26 26 N 1.31622 * 119.99769 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 119.99881 * 179.97438 * 25 23 22 28 28 H 1.48508 * 109.46659 * 90.00377 * 27 25 23 29 29 H 1.48496 * 109.47127 * 209.99851 * 27 25 23 30 30 H 1.48496 * 109.47260 * 330.00748 * 27 25 23 31 31 H 1.09002 * 109.47173 * 298.30658 * 1 2 3 32 32 H 1.09000 * 109.47458 * 58.30463 * 1 2 3 33 33 H 1.09000 * 109.47290 * 178.31236 * 1 2 3 34 34 H 1.09003 * 109.88407 * 21.13877 * 4 2 1 35 35 H 1.09002 * 109.88224 * 259.97222 * 4 2 1 36 36 H 1.07996 * 119.73052 * 0.02562 * 9 8 6 37 37 H 1.08000 * 119.38000 * 180.02562 * 10 9 8 38 38 H 1.07999 * 119.90098 * 179.97438 * 11 10 9 39 39 H 1.08001 * 119.14329 * 179.97438 * 14 13 12 40 40 H 1.07992 * 120.06398 * 180.02562 * 15 14 13 41 41 H 1.07998 * 120.91652 * 180.02562 * 16 15 14 42 42 H 1.08996 * 110.36929 * 94.47834 * 18 5 4 43 43 H 1.09005 * 110.36734 * 216.80319 * 18 5 4 44 44 H 1.09005 * 109.47166 * 192.97986 * 21 19 18 45 45 H 1.09004 * 109.46830 * 312.97338 * 21 19 18 46 46 H 0.96993 * 120.00105 * 0.02562 * 22 21 19 47 47 H 0.97002 * 119.99358 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0760 -0.7892 1.2085 5 7 3.2445 -1.5496 0.7414 6 6 3.9924 -2.3812 1.4935 7 8 4.8820 -3.0314 0.9795 8 6 3.7353 -2.4982 2.9418 9 6 3.5663 -1.3615 3.7184 10 6 3.3235 -1.4681 5.0825 11 6 3.2455 -2.6830 5.6933 12 6 3.4106 -3.8633 4.9452 13 7 3.3374 -5.0635 5.5296 14 6 3.4904 -6.1678 4.8404 15 6 3.7357 -6.1470 3.4689 16 6 3.8222 -4.9522 2.8109 17 6 3.6530 -3.7722 3.5539 18 6 3.4666 -1.2467 -0.6842 19 6 2.0789 -0.7975 -1.2125 20 1 1.4447 -1.6556 -1.4353 21 6 2.2277 0.1040 -2.4398 22 7 2.6327 -0.7039 -3.5929 23 6 2.8279 -0.1093 -4.8109 24 1 2.6836 0.9553 -4.9213 25 6 3.2121 -0.8746 -5.9033 26 7 3.3884 -2.1720 -5.7685 27 14 3.4776 -0.0635 -7.5649 28 1 4.8935 0.3686 -7.6841 29 1 3.1635 -1.0331 -8.6449 30 1 2.5874 1.1188 -7.6865 31 1 -0.3633 0.4873 0.9048 32 1 -0.3634 0.5399 -0.8744 33 1 -0.3634 -1.0272 -0.0303 34 1 1.3130 -1.4733 1.5799 35 1 2.3741 -0.0992 1.9979 36 1 3.6229 -0.3858 3.2590 37 1 3.1943 -0.5707 5.6693 38 1 3.0563 -2.7407 6.7550 39 1 3.4247 -7.1184 5.3488 40 1 3.8571 -7.0732 2.9270 41 1 4.0113 -4.9165 1.7482 42 1 4.1946 -0.4428 -0.7923 43 1 3.8031 -2.1382 -1.2135 44 1 1.2747 0.5886 -2.6523 45 1 2.9853 0.8627 -2.2436 46 1 2.7619 -1.6601 -3.4938 47 1 3.6566 -2.7068 -6.5320 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754816088.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:05 Heat of formation + Delta-G solvation = 35.465280 kcal Electronic energy + Delta-G solvation = -28770.483062 eV Core-core repulsion = 24918.253180 eV Total energy + Delta-G solvation = -3852.229881 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.33562 -39.98073 -38.01865 -37.15353 -34.71695 -33.67215 -32.98866 -31.45659 -30.89488 -30.63760 -28.98960 -26.60400 -25.73763 -24.70176 -23.81894 -23.57736 -22.59933 -21.14554 -20.06628 -19.65852 -18.61642 -17.54170 -17.28073 -17.05340 -16.46218 -16.11919 -15.38134 -14.96634 -14.83713 -14.57273 -14.52526 -14.15775 -14.10694 -13.69323 -13.55453 -13.39822 -13.19617 -12.97894 -12.81230 -12.51587 -12.28310 -12.15802 -12.06955 -11.97377 -11.62968 -11.38366 -11.10029 -10.87832 -10.82139 -10.63070 -10.49793 -10.40696 -10.24893 -10.03136 -9.68810 -9.62127 -9.12151 -8.89197 -8.70225 -8.51911 -6.94330 -5.77077 -3.06571 -0.08170 0.50278 1.51362 2.40144 2.72423 2.94782 3.43354 3.48173 3.50113 3.80970 3.95508 4.13555 4.39501 4.46232 4.48106 4.52612 4.56922 4.71859 4.75337 4.80333 4.84986 5.00396 5.11971 5.24118 5.35845 5.44756 5.46228 5.46993 5.51271 5.57018 5.65615 5.69321 5.78034 5.79468 5.93351 5.95727 6.00210 6.02706 6.07476 6.14682 6.18769 6.22827 6.35215 6.39317 6.46016 6.67100 6.79052 7.43460 7.58507 7.68698 8.02120 8.41116 9.52438 10.09076 10.43303 11.45556 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017042 B = 0.002513 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.599979 B =11140.098487 C =12149.244364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.098 4.098 3 H 0.088 0.912 4 C 0.101 3.899 5 N -0.610 5.610 6 C 0.570 3.430 7 O -0.527 6.527 8 C -0.095 4.095 9 C -0.083 4.083 10 C -0.106 4.106 11 C -0.075 4.075 12 C 0.123 3.877 13 N -0.477 5.477 14 C 0.134 3.866 15 C -0.174 4.174 16 C -0.048 4.048 17 C -0.069 4.069 18 C 0.114 3.886 19 C -0.100 4.100 20 H 0.087 0.913 21 C 0.166 3.834 22 N -0.733 5.733 23 C -0.242 4.242 24 H 0.070 0.930 25 C -0.013 4.013 26 N -0.931 5.931 27 Si 0.907 3.093 28 H -0.290 1.290 29 H -0.291 1.291 30 H -0.282 1.282 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.161 0.839 40 H 0.141 0.859 41 H 0.150 0.850 42 H 0.074 0.926 43 H 0.086 0.914 44 H 0.025 0.975 45 H 0.021 0.979 46 H 0.384 0.616 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.173 -0.715 25.497 25.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.118 4.118 3 H 0.106 0.894 4 C -0.022 4.022 5 N -0.342 5.342 6 C 0.359 3.641 7 O -0.405 6.405 8 C -0.099 4.099 9 C -0.101 4.101 10 C -0.125 4.125 11 C -0.094 4.094 12 C 0.002 3.998 13 N -0.185 5.185 14 C -0.039 4.039 15 C -0.194 4.194 16 C -0.074 4.074 17 C -0.072 4.072 18 C -0.007 4.007 19 C -0.120 4.120 20 H 0.105 0.895 21 C 0.038 3.962 22 N -0.377 5.377 23 C -0.373 4.373 24 H 0.088 0.912 25 C -0.209 4.209 26 N -0.580 5.580 27 Si 0.738 3.262 28 H -0.217 1.217 29 H -0.218 1.218 30 H -0.208 1.208 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.154 0.846 37 H 0.155 0.845 38 H 0.157 0.843 39 H 0.178 0.822 40 H 0.159 0.841 41 H 0.167 0.833 42 H 0.092 0.908 43 H 0.104 0.896 44 H 0.043 0.957 45 H 0.039 0.961 46 H 0.218 0.782 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.809 -0.917 26.042 26.335 hybrid contribution 0.426 0.100 -1.857 1.908 sum -3.383 -0.817 24.186 24.435 Atomic orbital electron populations 1.21745 0.93670 1.02270 1.02078 1.22233 0.96474 0.99506 0.93548 0.89353 1.22315 0.87611 0.94785 0.97477 1.48478 1.29628 1.43911 1.12228 1.17774 0.81723 0.79127 0.85525 1.90831 1.31947 1.44297 1.73403 1.19901 1.03143 0.93335 0.93539 1.21457 0.96600 0.97990 0.94063 1.20825 0.99403 0.98019 0.94300 1.20952 0.97847 0.90205 1.00370 1.18808 0.98759 0.92604 0.89674 1.68054 1.13856 0.97706 1.38884 1.23008 0.92639 0.96803 0.91405 1.21997 1.02058 0.99300 0.96072 1.21794 0.92655 0.91301 1.01626 1.18580 1.01167 0.93310 0.94158 1.22466 0.97743 1.01869 0.78622 1.22716 0.95163 0.99322 0.94768 0.89492 1.20580 0.97297 0.92709 0.85623 1.42365 1.82651 1.07510 1.05188 1.19197 1.38838 0.92695 0.86538 0.91174 1.24752 1.02403 0.95590 0.98154 1.69663 1.53661 1.04341 1.30316 0.86194 0.77889 0.78076 0.84040 1.21703 1.21773 1.20774 0.92645 0.91528 0.92446 0.91254 0.91290 0.84600 0.84501 0.84330 0.82157 0.84139 0.83278 0.90779 0.89580 0.95736 0.96082 0.78224 0.93468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.13 37.16 0.34 -1.01 16 2 C -0.10 -1.08 3.01 -88.79 -0.27 -1.35 16 3 H 0.09 0.91 8.04 -51.93 -0.42 0.49 16 4 C 0.10 1.05 5.56 -3.07 -0.02 1.03 16 5 N -0.61 -8.39 3.32 -171.60 -0.57 -8.96 16 6 C 0.57 8.59 6.86 -12.46 -0.09 8.50 16 7 O -0.53 -9.83 15.45 5.29 0.08 -9.75 16 8 C -0.10 -1.19 5.37 -104.66 -0.56 -1.75 16 9 C -0.08 -0.78 8.41 -39.15 -0.33 -1.11 16 10 C -0.11 -0.82 9.92 -40.04 -0.40 -1.21 16 11 C -0.08 -0.69 9.96 -39.38 -0.39 -1.08 16 12 C 0.12 1.44 6.60 -84.88 -0.56 0.88 16 13 N -0.48 -5.48 10.34 -10.99 -0.11 -5.59 16 14 C 0.13 1.26 11.15 -17.47 -0.19 1.06 16 15 C -0.17 -1.70 10.03 -39.73 -0.40 -2.10 16 16 C -0.05 -0.60 9.24 -39.30 -0.36 -0.96 16 17 C -0.07 -0.89 5.76 -106.53 -0.61 -1.50 16 18 C 0.11 1.83 6.35 -2.41 -0.02 1.81 16 19 C -0.10 -1.51 2.51 -88.35 -0.22 -1.73 16 20 H 0.09 1.40 8.04 -51.93 -0.42 0.98 16 21 C 0.17 3.12 5.72 -4.04 -0.02 3.10 16 22 N -0.73 -18.11 5.55 -59.90 -0.33 -18.44 16 23 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 24 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 25 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 26 N -0.93 -28.23 13.06 55.49 0.72 -27.51 16 27 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 28 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 29 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 30 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 34 H 0.07 0.69 7.82 -51.93 -0.41 0.28 16 35 H 0.07 0.56 5.86 -51.93 -0.30 0.26 16 36 H 0.14 1.05 6.34 -52.49 -0.33 0.72 16 37 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 38 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.16 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 41 H 0.15 2.05 6.22 -52.49 -0.33 1.72 16 42 H 0.07 1.21 7.91 -51.93 -0.41 0.80 16 43 H 0.09 1.61 7.99 -51.93 -0.41 1.20 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.02 0.40 7.96 -51.93 -0.41 -0.01 16 46 H 0.38 10.09 7.67 -40.82 -0.31 9.78 16 47 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 384.46 15.07 5.79 5.79 Total: -1.00 -34.10 384.46 -10.47 -44.57 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -6.68 Total: 7.24 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: -4.35 Total: -4.71 kcal Atomic # 7 Polarization: -60.21 SS G_CDS: -0.29 Total: -60.50 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.08 Total: -9.75 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.10 -10.47 -44.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754816088.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.037 kcal (2) G-P(sol) polarization free energy of solvation -34.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds