Wall clock time and date at job start Tue Mar 31 2020 22:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 110.79564 * 2 1 4 4 C 1.54941 * 110.74152 * 236.70881 * 2 1 3 5 5 N 1.48115 * 103.25341 * 279.04053 * 4 2 1 6 6 C 1.34781 * 127.03306 * 140.67242 * 5 4 2 7 7 O 1.21589 * 119.99580 * 175.50057 * 6 5 4 8 8 C 1.47543 * 120.00078 * 355.50390 * 6 5 4 9 9 C 1.38696 * 120.38972 * 43.32056 * 8 6 5 10 10 C 1.38969 * 120.53314 * 180.02562 * 9 8 6 11 11 C 1.36209 * 121.24444 * 359.97438 * 10 9 8 12 12 C 1.40715 * 120.19868 * 359.97438 * 11 10 9 13 13 N 1.33683 * 120.94762 * 180.02562 * 12 11 10 14 14 C 1.31076 * 121.34377 * 179.24262 * 13 12 11 15 15 C 1.39338 * 121.69922 * 0.77164 * 14 13 12 16 16 C 1.36669 * 119.87493 * 359.48316 * 15 14 13 17 17 C 1.40479 * 118.16601 * 0.02562 * 16 15 14 18 18 C 1.47482 * 105.93397 * 320.70643 * 5 4 2 19 19 C 1.54000 * 107.08405 * 25.45051 * 18 5 4 20 20 H 1.09006 * 110.32820 * 239.70231 * 19 18 5 21 21 C 1.53000 * 110.33046 * 117.58576 * 19 18 5 22 22 N 1.46495 * 109.46950 * 66.45395 * 21 19 18 23 23 C 1.36946 * 119.99617 * 180.27732 * 22 21 19 24 24 H 1.07992 * 120.00094 * 359.72203 * 23 22 21 25 25 C 1.38814 * 119.99508 * 179.72605 * 23 22 21 26 26 N 1.31615 * 120.00512 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 119.99529 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.47543 * 0.02562 * 27 25 23 29 29 H 1.48501 * 109.46761 * 119.99871 * 27 25 23 30 30 H 1.48497 * 109.47196 * 239.99581 * 27 25 23 31 31 H 1.08994 * 109.47262 * 296.71078 * 1 2 3 32 32 H 1.09002 * 109.47215 * 56.71122 * 1 2 3 33 33 H 1.09001 * 109.46846 * 176.70945 * 1 2 3 34 34 H 1.08992 * 110.66439 * 160.59962 * 4 2 1 35 35 H 1.09004 * 110.80362 * 37.54711 * 4 2 1 36 36 H 1.07993 * 119.72941 * 0.02562 * 9 8 6 37 37 H 1.08007 * 119.37628 * 179.97438 * 10 9 8 38 38 H 1.08003 * 119.90042 * 179.97438 * 11 10 9 39 39 H 1.07997 * 119.15017 * 180.25790 * 14 13 12 40 40 H 1.08009 * 120.06300 * 179.46650 * 15 14 13 41 41 H 1.08002 * 120.92089 * 180.02562 * 16 15 14 42 42 H 1.08998 * 109.91486 * 266.08648 * 18 5 4 43 43 H 1.09003 * 110.07158 * 144.89550 * 18 5 4 44 44 H 1.09001 * 109.46887 * 306.44886 * 21 19 18 45 45 H 1.09009 * 109.47316 * 186.45528 * 21 19 18 46 46 H 0.96999 * 120.00545 * 0.02562 * 22 21 19 47 47 H 0.96999 * 120.00274 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9170 1.0190 0.0000 4 6 2.0788 -0.7953 -1.2112 5 7 1.9872 -2.2038 -0.7622 6 6 1.6221 -3.2696 -1.5021 7 8 1.6695 -4.3865 -1.0240 8 6 1.1652 -3.0809 -2.8922 9 6 1.8371 -2.2129 -3.7400 10 6 1.4089 -2.0325 -5.0497 11 6 0.3250 -2.6983 -5.5367 12 6 -0.3869 -3.5898 -4.7130 13 7 -1.4525 -4.2514 -5.1756 14 6 -2.1125 -5.0947 -4.4197 15 6 -1.7478 -5.3315 -3.0959 16 6 -0.6703 -4.6835 -2.5603 17 6 0.0392 -3.7885 -3.3783 18 6 2.3763 -2.2014 0.6604 19 6 2.0775 -0.7937 1.2087 20 1 2.9907 -0.3320 1.5845 21 6 1.0252 -0.8672 2.3170 22 7 1.5801 -1.5793 3.4707 23 6 0.8135 -1.7737 4.5887 24 1 -0.1984 -1.3982 4.6216 25 6 1.3375 -2.4534 5.6798 26 7 2.5707 -2.9115 5.6396 27 14 0.2921 -2.7180 7.2051 28 1 -1.0476 -2.1115 6.9985 29 1 0.1423 -4.1740 7.4561 30 1 0.9502 -2.0795 8.3731 31 1 -0.3633 0.4619 0.9179 32 1 -0.3634 0.5640 -0.8590 33 1 -0.3633 -1.0260 -0.0590 34 1 3.1145 -0.5226 -1.4131 35 1 1.4603 -0.6321 -2.0938 36 1 2.6999 -1.6729 -3.3793 37 1 1.9459 -1.3516 -5.6937 38 1 0.0109 -2.5413 -6.5581 39 1 -2.9659 -5.6132 -4.8311 40 1 -2.3157 -6.0257 -2.4942 41 1 -0.3725 -4.8546 -1.5363 42 1 3.4403 -2.4185 0.7546 43 1 1.7961 -2.9440 1.2082 44 1 0.1473 -1.3987 1.9497 45 1 0.7405 0.1419 2.6153 46 1 2.4892 -1.9163 3.4414 47 1 2.9369 -3.3862 6.4022 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754816089.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:07 Heat of formation + Delta-G solvation = 18.852360 kcal Electronic energy + Delta-G solvation = -29276.091689 eV Core-core repulsion = 25423.141418 eV Total energy + Delta-G solvation = -3852.950272 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.20855 -41.07178 -39.26389 -37.95733 -36.46661 -34.51487 -34.23560 -32.84083 -31.68162 -31.57587 -30.27122 -28.06356 -26.94635 -25.74312 -25.05605 -24.55128 -24.01201 -22.86983 -20.65363 -20.40939 -19.50930 -19.07033 -18.22035 -17.97132 -17.52189 -17.40257 -16.78770 -16.53254 -15.78337 -15.61019 -15.46997 -15.41450 -15.24357 -15.09067 -14.70189 -14.35877 -14.21441 -14.11059 -13.95325 -13.69191 -13.31574 -13.12090 -13.04227 -12.92579 -12.82734 -12.79725 -12.65716 -12.38905 -12.14788 -11.92920 -11.69857 -11.65075 -11.55686 -11.39262 -11.27740 -10.95907 -10.52009 -9.87775 -9.80385 -9.33727 -9.01946 -7.98136 -5.26732 -0.87447 -0.24468 0.63672 1.43634 1.45142 1.51369 1.54816 1.75981 2.01121 2.52923 3.02052 3.22376 3.28852 3.35684 3.48821 3.58733 3.72120 3.76035 3.78839 3.81546 3.95184 4.11379 4.16972 4.25310 4.30631 4.36549 4.42166 4.53982 4.55603 4.62124 4.70717 4.74148 4.76201 4.83393 4.92617 4.96881 4.98030 5.03840 5.05700 5.14138 5.23067 5.24627 5.28837 5.31806 5.46387 5.47967 5.51604 5.75585 6.24595 6.40859 6.79686 6.93616 7.30680 8.06879 8.29279 9.25556 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014693 B = 0.002878 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.275031 B = 9726.041808 C =10699.788762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.087 4.087 3 H 0.127 0.873 4 C 0.094 3.906 5 N -0.605 5.605 6 C 0.568 3.432 7 O -0.585 6.585 8 C -0.126 4.126 9 C -0.064 4.064 10 C -0.094 4.094 11 C -0.073 4.073 12 C 0.102 3.898 13 N -0.488 5.488 14 C 0.132 3.868 15 C -0.167 4.167 16 C -0.083 4.083 17 C -0.086 4.086 18 C 0.117 3.883 19 C -0.095 4.095 20 H 0.096 0.904 21 C 0.164 3.836 22 N -0.746 5.746 23 C -0.245 4.245 24 H 0.073 0.927 25 C -0.076 4.076 26 N -0.968 5.968 27 Si 0.972 3.028 28 H -0.266 1.266 29 H -0.296 1.296 30 H -0.289 1.289 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.025 0.975 34 H 0.111 0.889 35 H 0.106 0.894 36 H 0.162 0.838 37 H 0.183 0.817 38 H 0.162 0.838 39 H 0.198 0.802 40 H 0.161 0.839 41 H 0.121 0.879 42 H 0.066 0.934 43 H 0.039 0.961 44 H 0.009 0.991 45 H 0.031 0.969 46 H 0.374 0.626 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.906 6.954 -27.897 29.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.107 4.107 3 H 0.145 0.855 4 C -0.027 4.027 5 N -0.337 5.337 6 C 0.358 3.642 7 O -0.466 6.466 8 C -0.129 4.129 9 C -0.083 4.083 10 C -0.113 4.113 11 C -0.091 4.091 12 C -0.019 4.019 13 N -0.196 5.196 14 C -0.040 4.040 15 C -0.187 4.187 16 C -0.109 4.109 17 C -0.089 4.089 18 C -0.006 4.006 19 C -0.114 4.114 20 H 0.115 0.885 21 C 0.038 3.962 22 N -0.389 5.389 23 C -0.376 4.376 24 H 0.091 0.909 25 C -0.268 4.268 26 N -0.619 5.619 27 Si 0.801 3.199 28 H -0.191 1.191 29 H -0.223 1.223 30 H -0.216 1.216 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.044 0.956 34 H 0.129 0.871 35 H 0.124 0.876 36 H 0.179 0.821 37 H 0.201 0.799 38 H 0.179 0.821 39 H 0.215 0.785 40 H 0.179 0.821 41 H 0.138 0.862 42 H 0.084 0.916 43 H 0.058 0.942 44 H 0.027 0.973 45 H 0.049 0.951 46 H 0.205 0.795 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -4.254 6.561 -28.488 29.542 hybrid contribution 0.143 -1.331 2.739 3.048 sum -4.111 5.230 -25.750 26.595 Atomic orbital electron populations 1.21789 0.94890 1.00547 1.02681 1.22318 0.96091 1.00340 0.91932 0.85507 1.23219 1.03575 0.77594 0.98272 1.48777 1.64991 1.08779 1.11111 1.18288 0.76745 0.83130 0.86024 1.90780 1.56442 1.25405 1.74001 1.19714 0.98500 1.01589 0.93139 1.21875 0.98744 0.93806 0.93836 1.21279 0.95921 0.99389 0.94731 1.21343 0.94134 0.93181 1.00465 1.19197 0.94243 0.97871 0.90570 1.68121 1.06516 1.07780 1.37228 1.23569 0.97970 0.92462 0.90023 1.22286 0.97404 1.01191 0.97806 1.21786 0.94611 0.94245 1.00249 1.18745 0.96443 0.98252 0.95473 1.21951 0.99474 0.98400 0.80739 1.22256 0.99750 0.93923 0.95505 0.88549 1.20906 0.94445 0.94535 0.86284 1.42634 1.14910 1.67635 1.13720 1.19633 0.96255 1.28589 0.93170 0.90902 1.25564 0.97864 1.01657 1.01696 1.69815 1.15977 1.44390 1.31713 0.85099 0.78357 0.76910 0.79567 1.19052 1.22329 1.21587 0.92425 0.90196 0.95571 0.87103 0.87564 0.82086 0.79927 0.82064 0.78516 0.82101 0.86151 0.91583 0.94201 0.97285 0.95108 0.79460 0.94003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 7.99 71.98 0.57 -2.55 16 2 C -0.09 -1.71 3.60 -9.58 -0.03 -1.75 16 3 H 0.13 1.68 8.14 -2.39 -0.02 1.66 16 4 C 0.09 1.59 4.94 86.73 0.43 2.02 16 5 N -0.61 -16.95 3.19 -813.15 -2.59 -19.54 16 6 C 0.57 18.43 7.05 86.70 0.61 19.04 16 7 O -0.58 -24.77 15.33 -4.00 -0.06 -24.83 16 8 C -0.13 -3.18 5.42 -19.89 -0.11 -3.29 16 9 C -0.06 -0.99 7.76 22.55 0.17 -0.82 16 10 C -0.09 -1.02 9.92 21.97 0.22 -0.80 16 11 C -0.07 -1.11 9.96 22.40 0.22 -0.89 16 12 C 0.10 2.34 6.60 40.27 0.27 2.61 16 13 N -0.49 -10.92 10.34 -188.68 -1.95 -12.87 16 14 C 0.13 2.47 11.15 85.07 0.95 3.42 16 15 C -0.17 -3.60 10.03 22.17 0.22 -3.38 16 16 C -0.08 -2.38 9.23 22.45 0.21 -2.18 16 17 C -0.09 -2.34 5.76 -21.10 -0.12 -2.46 16 18 C 0.12 3.99 6.29 86.53 0.54 4.54 16 19 C -0.09 -2.81 3.00 -9.90 -0.03 -2.84 16 20 H 0.10 2.72 8.14 -2.38 -0.02 2.70 16 21 C 0.16 6.50 4.17 86.38 0.36 6.86 16 22 N -0.75 -38.60 5.33 -343.45 -1.83 -40.43 16 23 C -0.24 -14.04 9.99 84.03 0.84 -13.20 16 24 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 25 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 26 N -0.97 -60.69 13.06 21.65 0.28 -60.41 16 27 Si 0.97 47.37 29.55 68.60 2.03 49.40 16 28 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 29 H -0.30 -14.54 7.11 99.48 0.71 -13.84 16 30 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 31 H 0.06 1.38 6.67 -2.39 -0.02 1.37 16 32 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.03 0.72 7.61 -2.39 -0.02 0.70 16 34 H 0.11 1.22 8.13 -2.39 -0.02 1.20 16 35 H 0.11 1.38 5.95 -2.39 -0.01 1.36 16 36 H 0.16 1.61 6.63 -2.91 -0.02 1.59 16 37 H 0.18 0.37 8.06 -2.91 -0.02 0.35 16 38 H 0.16 1.70 8.06 -2.91 -0.02 1.67 16 39 H 0.20 2.02 8.06 -2.91 -0.02 2.00 16 40 H 0.16 2.58 8.06 -2.91 -0.02 2.56 16 41 H 0.12 4.15 6.07 -2.91 -0.02 4.13 16 42 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 43 H 0.04 1.76 7.52 -2.39 -0.02 1.74 16 44 H 0.01 0.39 6.85 -2.39 -0.02 0.38 16 45 H 0.03 1.19 7.55 -2.38 -0.02 1.17 16 46 H 0.37 20.49 7.51 -92.71 -0.70 19.79 16 47 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -82.48 377.94 1.97 -80.51 By element: Atomic # 1 Polarization: 27.52 SS G_CDS: 0.30 Total: 27.82 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: 5.79 Total: 0.35 kcal Atomic # 7 Polarization: -127.16 SS G_CDS: -6.09 Total: -133.25 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -0.06 Total: -24.83 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 2.03 Total: 49.40 kcal Total: -82.48 1.97 -80.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754816089.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.359 kcal (2) G-P(sol) polarization free energy of solvation -82.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds