Wall clock time and date at job start Tue Mar 31 2020 22:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 110.80106 * 2 1 4 4 C 1.54946 * 110.73681 * 236.70680 * 2 1 3 5 5 N 1.48110 * 103.25814 * 279.03755 * 4 2 1 6 6 C 1.34780 * 127.03421 * 140.67425 * 5 4 2 7 7 O 1.21545 * 120.00374 * 176.25394 * 6 5 4 8 8 C 1.47881 * 119.99886 * 356.25027 * 6 5 4 9 9 C 1.40567 * 119.70613 * 214.41737 * 8 6 5 10 10 C 1.35823 * 120.73717 * 179.73244 * 9 8 6 11 11 C 1.40548 * 119.97623 * 0.56022 * 10 9 8 12 12 C 1.40821 * 121.12584 * 179.72185 * 11 10 9 13 13 C 1.36557 * 118.19623 * 179.97438 * 12 11 10 14 14 C 1.39415 * 119.94106 * 0.02562 * 13 12 11 15 15 N 1.31028 * 121.71233 * 359.97191 * 14 13 12 16 16 C 1.33746 * 121.35080 * 0.05280 * 15 14 13 17 17 C 1.38412 * 119.70424 * 34.68802 * 8 6 5 18 18 C 1.47489 * 105.93379 * 320.71100 * 5 4 2 19 19 C 1.54004 * 107.08408 * 25.44700 * 18 5 4 20 20 H 1.08997 * 110.32511 * 239.80168 * 19 18 5 21 21 C 1.52993 * 110.32871 * 117.58611 * 19 18 5 22 22 N 1.46496 * 109.47252 * 66.45150 * 21 19 18 23 23 C 1.36936 * 120.00431 * 179.97438 * 22 21 19 24 24 H 1.08005 * 119.99533 * 0.02562 * 23 22 21 25 25 C 1.38814 * 120.00471 * 179.97438 * 23 22 21 26 26 N 1.31618 * 119.99694 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00188 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.46665 * 60.00032 * 27 25 23 29 29 H 1.48499 * 109.47316 * 179.97438 * 27 25 23 30 30 H 1.48503 * 109.47269 * 300.00723 * 27 25 23 31 31 H 1.09002 * 109.47224 * 296.70994 * 1 2 3 32 32 H 1.09001 * 109.47179 * 56.71074 * 1 2 3 33 33 H 1.09002 * 109.47352 * 176.70811 * 1 2 3 34 34 H 1.09004 * 110.65819 * 160.59959 * 4 2 1 35 35 H 1.09000 * 110.80463 * 37.55283 * 4 2 1 36 36 H 1.08007 * 119.63624 * 359.97438 * 9 8 6 37 37 H 1.07995 * 120.01194 * 180.23872 * 10 9 8 38 38 H 1.07999 * 120.89881 * 359.95242 * 12 11 10 39 39 H 1.07996 * 120.02531 * 179.97438 * 13 12 11 40 40 H 1.07993 * 119.14668 * 180.02562 * 14 13 12 41 41 H 1.08000 * 120.23417 * 0.02562 * 17 8 6 42 42 H 1.08997 * 109.90922 * 266.08452 * 18 5 4 43 43 H 1.09003 * 110.06924 * 144.89232 * 18 5 4 44 44 H 1.08999 * 109.47313 * 186.45511 * 21 19 18 45 45 H 1.09006 * 109.47112 * 306.45527 * 21 19 18 46 46 H 0.96998 * 119.99889 * 359.97438 * 22 21 19 47 47 H 0.96996 * 119.99680 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9170 1.0189 0.0000 4 6 2.0786 -0.7954 -1.2112 5 7 1.9871 -2.2039 -0.7623 6 6 1.6220 -3.2697 -1.5022 7 8 1.6564 -4.3848 -1.0199 8 6 1.1796 -3.0822 -2.9007 9 6 0.1789 -3.9141 -3.4322 10 6 -0.2471 -3.7569 -4.7123 11 6 0.3224 -2.7613 -5.5246 12 6 -0.0967 -2.5809 -6.8569 13 6 0.4969 -1.5951 -7.5922 14 6 1.4892 -0.8012 -7.0189 15 7 1.8769 -0.9716 -5.7790 16 6 1.3367 -1.9191 -5.0050 17 6 1.7587 -2.0930 -3.6765 18 6 2.3762 -2.2015 0.6603 19 6 2.0775 -0.7937 1.2087 20 1 2.9909 -0.3314 1.5829 21 6 1.0253 -0.8673 2.3169 22 7 1.5801 -1.5794 3.4707 23 6 0.8158 -1.7685 4.5910 24 1 -0.1963 -1.3929 4.6239 25 6 1.3414 -2.4438 5.6841 26 7 2.5746 -2.9019 5.6438 27 14 0.2989 -2.7010 7.2126 28 1 -0.9144 -3.4806 6.8587 29 1 1.0857 -3.4448 8.2290 30 1 -0.1036 -1.3826 7.7650 31 1 -0.3634 0.4619 0.9180 32 1 -0.3633 0.5640 -0.8590 33 1 -0.3634 -1.0260 -0.0590 34 1 3.1145 -0.5227 -1.4131 35 1 1.4602 -0.6321 -2.0939 36 1 -0.2591 -4.6843 -2.8146 37 1 -1.0194 -4.4000 -5.1074 38 1 -0.8664 -3.2055 -7.2855 39 1 0.1984 -1.4313 -8.6170 40 1 1.9497 -0.0250 -7.6120 41 1 2.5305 -1.4603 -3.2639 42 1 3.4402 -2.4185 0.7545 43 1 1.7960 -2.9441 1.2081 44 1 0.7406 0.1417 2.6153 45 1 0.1473 -1.3989 1.9497 46 1 2.4890 -1.9171 3.4410 47 1 2.9420 -3.3734 6.4077 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754824221.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:26 Heat of formation + Delta-G solvation = 43.829353 kcal Electronic energy + Delta-G solvation = -28813.510568 eV Core-core repulsion = 24961.643380 eV Total energy + Delta-G solvation = -3851.867188 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.29626 -40.14768 -38.20742 -36.86568 -34.71718 -33.92398 -32.74847 -31.20681 -31.03121 -30.52121 -28.84904 -26.99182 -25.58761 -24.87092 -24.08674 -23.05923 -22.58964 -21.71933 -20.20400 -19.04119 -18.37230 -17.64916 -17.28832 -16.91722 -16.31408 -16.23856 -15.51073 -14.98343 -14.88001 -14.73654 -14.43886 -14.14136 -13.88177 -13.76581 -13.58607 -13.43627 -13.27018 -12.95682 -12.75102 -12.46707 -12.09499 -12.02506 -11.90675 -11.81977 -11.70077 -11.59453 -11.01975 -10.93496 -10.80844 -10.53175 -10.43037 -10.24012 -10.01888 -9.92274 -9.82461 -9.64357 -9.15601 -8.83842 -8.64627 -8.57175 -6.88876 -5.72740 -3.01535 -0.09614 0.32664 1.52414 2.26011 2.86285 3.06898 3.47021 3.51210 3.52374 3.72065 3.85441 4.14537 4.27060 4.39054 4.47219 4.52979 4.60906 4.63624 4.72602 4.86619 4.93463 4.96730 5.07026 5.31609 5.32788 5.41521 5.46397 5.47708 5.51257 5.60012 5.62437 5.65848 5.79760 5.83424 5.90582 5.99704 6.05530 6.08394 6.08755 6.17074 6.28607 6.34313 6.39027 6.44748 6.51441 6.74368 6.89567 7.49407 7.55879 7.72651 8.14330 8.45976 9.56976 10.14286 10.48657 11.50038 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022820 B = 0.002355 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.717614 B =11885.840780 C =12333.789339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.098 4.098 3 H 0.089 0.911 4 C 0.090 3.910 5 N -0.608 5.608 6 C 0.570 3.430 7 O -0.528 6.528 8 C -0.095 4.095 9 C -0.069 4.069 10 C -0.101 4.101 11 C -0.090 4.090 12 C -0.059 4.059 13 C -0.172 4.172 14 C 0.129 3.871 15 N -0.468 5.468 16 C 0.119 3.881 17 C -0.064 4.064 18 C 0.113 3.887 19 C -0.104 4.104 20 H 0.087 0.913 21 C 0.162 3.838 22 N -0.733 5.733 23 C -0.240 4.240 24 H 0.069 0.931 25 C -0.013 4.013 26 N -0.933 5.933 27 Si 0.907 3.093 28 H -0.286 1.286 29 H -0.291 1.291 30 H -0.286 1.286 31 H 0.068 0.932 32 H 0.049 0.951 33 H 0.057 0.943 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.140 0.860 37 H 0.137 0.863 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.161 0.839 41 H 0.149 0.851 42 H 0.067 0.933 43 H 0.092 0.908 44 H 0.022 0.978 45 H 0.024 0.976 46 H 0.383 0.617 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.982 5.541 -29.799 30.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 H 0.107 0.893 4 C -0.033 4.033 5 N -0.341 5.341 6 C 0.358 3.642 7 O -0.405 6.405 8 C -0.100 4.100 9 C -0.087 4.087 10 C -0.120 4.120 11 C -0.092 4.092 12 C -0.085 4.085 13 C -0.192 4.192 14 C -0.044 4.044 15 N -0.176 5.176 16 C -0.002 4.002 17 C -0.083 4.083 18 C -0.009 4.009 19 C -0.123 4.123 20 H 0.105 0.895 21 C 0.035 3.965 22 N -0.378 5.378 23 C -0.371 4.371 24 H 0.087 0.913 25 C -0.209 4.209 26 N -0.581 5.581 27 Si 0.738 3.262 28 H -0.213 1.213 29 H -0.217 1.217 30 H -0.213 1.213 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.096 0.904 35 H 0.104 0.896 36 H 0.158 0.842 37 H 0.155 0.845 38 H 0.158 0.842 39 H 0.156 0.844 40 H 0.178 0.822 41 H 0.166 0.834 42 H 0.085 0.915 43 H 0.111 0.889 44 H 0.040 0.960 45 H 0.042 0.958 46 H 0.217 0.783 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.452 5.325 -28.967 29.654 hybrid contribution -0.833 -0.758 0.442 1.210 sum -4.285 4.566 -28.525 29.204 Atomic orbital electron populations 1.21811 0.94253 1.02150 1.01839 1.22259 0.96723 0.98964 0.93797 0.89278 1.23011 1.01214 0.80765 0.98276 1.48707 1.65838 1.07136 1.12401 1.17799 0.77783 0.83678 0.84891 1.90838 1.54046 1.23203 1.72369 1.19963 0.98682 0.97034 0.94315 1.20916 0.94776 0.97613 0.95418 1.20903 1.00092 0.97458 0.93561 1.18963 0.97610 0.97495 0.95144 1.21524 0.97977 0.96640 0.92398 1.21954 0.98404 0.97116 1.01694 1.23006 0.93217 0.97155 0.91055 1.68031 1.25977 1.17716 1.05833 1.18721 0.94237 0.93073 0.94143 1.21550 0.99223 0.96019 0.91480 1.22211 1.00548 0.98865 0.79275 1.22354 1.00578 0.94015 0.95380 0.89513 1.20792 0.93667 0.95430 0.86644 1.42390 1.15566 1.67172 1.12635 1.19151 0.95943 1.29884 0.92119 0.91318 1.24738 0.96555 1.01153 0.98492 1.69645 1.14234 1.43142 1.31090 0.86270 0.79281 0.77655 0.82989 1.21295 1.21697 1.21311 0.91339 0.93222 0.92435 0.90408 0.89571 0.84249 0.84520 0.84190 0.84371 0.82200 0.83391 0.91485 0.88930 0.96007 0.95803 0.78303 0.93464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 7.99 37.16 0.30 -1.46 16 2 C -0.10 -1.17 3.60 -88.74 -0.32 -1.49 16 3 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 4 C 0.09 1.01 4.74 -2.13 -0.01 1.00 16 5 N -0.61 -8.91 3.19 -170.86 -0.54 -9.46 16 6 C 0.57 9.08 7.57 -12.31 -0.09 8.99 16 7 O -0.53 -10.50 17.15 5.33 0.09 -10.41 16 8 C -0.09 -1.21 5.60 -105.01 -0.59 -1.80 16 9 C -0.07 -0.77 9.50 -39.57 -0.38 -1.14 16 10 C -0.10 -0.90 9.74 -39.58 -0.39 -1.28 16 11 C -0.09 -0.84 5.75 -106.73 -0.61 -1.46 16 12 C -0.06 -0.39 9.88 -39.21 -0.39 -0.78 16 13 C -0.17 -0.98 10.03 -39.75 -0.40 -1.37 16 14 C 0.13 0.92 11.15 -17.46 -0.19 0.73 16 15 N -0.47 -4.83 10.34 -10.98 -0.11 -4.94 16 16 C 0.12 1.30 6.60 -84.87 -0.56 0.74 16 17 C -0.06 -0.72 7.71 -38.68 -0.30 -1.02 16 18 C 0.11 1.90 6.30 -2.98 -0.02 1.88 16 19 C -0.10 -1.62 3.00 -89.25 -0.27 -1.88 16 20 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 21 C 0.16 3.20 4.17 -4.05 -0.02 3.18 16 22 N -0.73 -18.58 5.33 -59.91 -0.32 -18.90 16 23 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 24 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 25 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 26 N -0.93 -28.61 13.06 55.49 0.72 -27.88 16 27 Si 0.91 22.81 29.55 -169.99 -5.02 17.79 16 28 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 29 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 30 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 31 H 0.07 0.88 6.67 -51.93 -0.35 0.54 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.81 7.61 -51.93 -0.40 0.41 16 34 H 0.08 0.75 8.05 -51.93 -0.42 0.33 16 35 H 0.09 0.88 5.49 -51.93 -0.29 0.59 16 36 H 0.14 1.53 7.97 -52.48 -0.42 1.11 16 37 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 38 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 39 H 0.14 0.36 8.06 -52.49 -0.42 -0.06 16 40 H 0.16 0.65 8.06 -52.49 -0.42 0.22 16 41 H 0.15 1.56 5.67 -52.49 -0.30 1.26 16 42 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.09 1.91 7.52 -51.93 -0.39 1.52 16 44 H 0.02 0.43 7.55 -51.93 -0.39 0.04 16 45 H 0.02 0.50 6.85 -51.93 -0.36 0.14 16 46 H 0.38 10.19 7.51 -40.82 -0.31 9.88 16 47 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 380.57 15.07 5.74 5.74 Total: -1.00 -35.15 380.57 -10.46 -45.61 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -6.53 Total: 7.06 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -4.48 Total: -4.60 kcal Atomic # 7 Polarization: -60.93 SS G_CDS: -0.25 Total: -61.18 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.09 Total: -10.41 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.15 -10.46 -45.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754824221.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.444 kcal (2) G-P(sol) polarization free energy of solvation -35.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds