Wall clock time and date at job start Tue Mar 31 2020 22:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 110.80106 * 2 1 4 4 C 1.54946 * 110.73681 * 236.70680 * 2 1 3 5 5 N 1.48110 * 103.25814 * 279.03755 * 4 2 1 6 6 C 1.34780 * 127.03421 * 140.67425 * 5 4 2 7 7 O 1.21545 * 120.00374 * 176.25394 * 6 5 4 8 8 C 1.47881 * 119.99886 * 356.25027 * 6 5 4 9 9 C 1.40567 * 119.70613 * 214.41737 * 8 6 5 10 10 C 1.35823 * 120.73717 * 179.73244 * 9 8 6 11 11 C 1.40548 * 119.97623 * 0.56022 * 10 9 8 12 12 C 1.40821 * 121.12584 * 179.72185 * 11 10 9 13 13 C 1.36557 * 118.19623 * 179.97438 * 12 11 10 14 14 C 1.39415 * 119.94106 * 0.02562 * 13 12 11 15 15 N 1.31028 * 121.71233 * 359.97191 * 14 13 12 16 16 C 1.33746 * 121.35080 * 0.05280 * 15 14 13 17 17 C 1.38412 * 119.70424 * 34.68802 * 8 6 5 18 18 C 1.47489 * 105.93379 * 320.71100 * 5 4 2 19 19 C 1.54004 * 107.08408 * 25.44700 * 18 5 4 20 20 H 1.08997 * 110.32511 * 239.80168 * 19 18 5 21 21 C 1.52993 * 110.32871 * 117.58611 * 19 18 5 22 22 N 1.46496 * 109.47252 * 66.45150 * 21 19 18 23 23 C 1.36936 * 120.00431 * 179.97438 * 22 21 19 24 24 H 1.08005 * 119.99533 * 0.02562 * 23 22 21 25 25 C 1.38814 * 120.00471 * 179.97438 * 23 22 21 26 26 N 1.31618 * 119.99694 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00188 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.46665 * 60.00032 * 27 25 23 29 29 H 1.48499 * 109.47316 * 179.97438 * 27 25 23 30 30 H 1.48503 * 109.47269 * 300.00723 * 27 25 23 31 31 H 1.09002 * 109.47224 * 296.70994 * 1 2 3 32 32 H 1.09001 * 109.47179 * 56.71074 * 1 2 3 33 33 H 1.09002 * 109.47352 * 176.70811 * 1 2 3 34 34 H 1.09004 * 110.65819 * 160.59959 * 4 2 1 35 35 H 1.09000 * 110.80463 * 37.55283 * 4 2 1 36 36 H 1.08007 * 119.63624 * 359.97438 * 9 8 6 37 37 H 1.07995 * 120.01194 * 180.23872 * 10 9 8 38 38 H 1.07999 * 120.89881 * 359.95242 * 12 11 10 39 39 H 1.07996 * 120.02531 * 179.97438 * 13 12 11 40 40 H 1.07993 * 119.14668 * 180.02562 * 14 13 12 41 41 H 1.08000 * 120.23417 * 0.02562 * 17 8 6 42 42 H 1.08997 * 109.90922 * 266.08452 * 18 5 4 43 43 H 1.09003 * 110.06924 * 144.89232 * 18 5 4 44 44 H 1.08999 * 109.47313 * 186.45511 * 21 19 18 45 45 H 1.09006 * 109.47112 * 306.45527 * 21 19 18 46 46 H 0.96998 * 119.99889 * 359.97438 * 22 21 19 47 47 H 0.96996 * 119.99680 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9170 1.0189 0.0000 4 6 2.0786 -0.7954 -1.2112 5 7 1.9871 -2.2039 -0.7623 6 6 1.6220 -3.2697 -1.5022 7 8 1.6564 -4.3848 -1.0199 8 6 1.1796 -3.0822 -2.9007 9 6 0.1789 -3.9141 -3.4322 10 6 -0.2471 -3.7569 -4.7123 11 6 0.3224 -2.7613 -5.5246 12 6 -0.0967 -2.5809 -6.8569 13 6 0.4969 -1.5951 -7.5922 14 6 1.4892 -0.8012 -7.0189 15 7 1.8769 -0.9716 -5.7790 16 6 1.3367 -1.9191 -5.0050 17 6 1.7587 -2.0930 -3.6765 18 6 2.3762 -2.2015 0.6603 19 6 2.0775 -0.7937 1.2087 20 1 2.9909 -0.3314 1.5829 21 6 1.0253 -0.8673 2.3169 22 7 1.5801 -1.5794 3.4707 23 6 0.8158 -1.7685 4.5910 24 1 -0.1963 -1.3929 4.6239 25 6 1.3414 -2.4438 5.6841 26 7 2.5746 -2.9019 5.6438 27 14 0.2989 -2.7010 7.2126 28 1 -0.9144 -3.4806 6.8587 29 1 1.0857 -3.4448 8.2290 30 1 -0.1036 -1.3826 7.7650 31 1 -0.3634 0.4619 0.9180 32 1 -0.3633 0.5640 -0.8590 33 1 -0.3634 -1.0260 -0.0590 34 1 3.1145 -0.5227 -1.4131 35 1 1.4602 -0.6321 -2.0939 36 1 -0.2591 -4.6843 -2.8146 37 1 -1.0194 -4.4000 -5.1074 38 1 -0.8664 -3.2055 -7.2855 39 1 0.1984 -1.4313 -8.6170 40 1 1.9497 -0.0250 -7.6120 41 1 2.5305 -1.4603 -3.2639 42 1 3.4402 -2.4185 0.7545 43 1 1.7960 -2.9441 1.2081 44 1 0.7406 0.1417 2.6153 45 1 0.1473 -1.3989 1.9497 46 1 2.4890 -1.9171 3.4410 47 1 2.9420 -3.3734 6.4077 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754824221.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:24 Heat of formation + Delta-G solvation = 20.931182 kcal Electronic energy + Delta-G solvation = -28814.503507 eV Core-core repulsion = 24961.643380 eV Total energy + Delta-G solvation = -3852.860127 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.08596 -41.19219 -39.40210 -37.72367 -36.49205 -34.73684 -34.10908 -32.84023 -31.89217 -31.32261 -30.26945 -28.14247 -26.97354 -25.93077 -25.03113 -24.45937 -23.47227 -22.93661 -21.20571 -20.39990 -19.41175 -18.90842 -18.39183 -17.91753 -17.49639 -17.23847 -16.76273 -16.45286 -15.80963 -15.65665 -15.44302 -15.34993 -15.20194 -14.96446 -14.77612 -14.52384 -14.22329 -14.09702 -13.92294 -13.67383 -13.39916 -13.12849 -12.99799 -12.88100 -12.81193 -12.73639 -12.69214 -12.53043 -12.23701 -11.91855 -11.69896 -11.66464 -11.45891 -11.39064 -11.17458 -10.92659 -10.47831 -9.95712 -9.74571 -9.34026 -9.00766 -7.96327 -5.25128 -0.78008 -0.35698 0.86555 1.38450 1.44368 1.48255 1.54201 1.73742 2.09913 2.54425 3.04062 3.10053 3.35861 3.40712 3.43950 3.55833 3.66442 3.77526 3.82306 3.97032 4.01900 4.05848 4.14924 4.22682 4.28251 4.29790 4.49773 4.53493 4.56482 4.60466 4.67719 4.75388 4.79366 4.83144 4.85630 4.93048 4.95966 5.00879 5.09821 5.13186 5.18280 5.24549 5.31113 5.33197 5.46806 5.47218 5.50465 5.77273 6.25874 6.37922 6.89617 6.92462 7.31860 8.08160 8.30799 9.27057 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022820 B = 0.002355 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.717614 B =11885.840780 C =12333.789339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.087 4.087 3 H 0.124 0.876 4 C 0.093 3.907 5 N -0.606 5.606 6 C 0.564 3.436 7 O -0.584 6.584 8 C -0.112 4.112 9 C -0.096 4.096 10 C -0.083 4.083 11 C -0.103 4.103 12 C -0.060 4.060 13 C -0.160 4.160 14 C 0.130 3.870 15 N -0.500 5.500 16 C 0.099 3.901 17 C -0.062 4.062 18 C 0.117 3.883 19 C -0.094 4.094 20 H 0.095 0.905 21 C 0.165 3.835 22 N -0.746 5.746 23 C -0.246 4.246 24 H 0.074 0.926 25 C -0.077 4.077 26 N -0.969 5.969 27 Si 0.974 3.026 28 H -0.281 1.281 29 H -0.294 1.294 30 H -0.274 1.274 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.030 0.970 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.128 0.872 37 H 0.170 0.830 38 H 0.173 0.827 39 H 0.178 0.822 40 H 0.191 0.809 41 H 0.152 0.848 42 H 0.065 0.935 43 H 0.044 0.956 44 H 0.032 0.968 45 H 0.012 0.988 46 H 0.373 0.627 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.255 7.891 -33.609 34.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.107 4.107 3 H 0.142 0.858 4 C -0.028 4.028 5 N -0.338 5.338 6 C 0.355 3.645 7 O -0.466 6.466 8 C -0.116 4.116 9 C -0.115 4.115 10 C -0.101 4.101 11 C -0.105 4.105 12 C -0.086 4.086 13 C -0.180 4.180 14 C -0.043 4.043 15 N -0.209 5.209 16 C -0.021 4.021 17 C -0.081 4.081 18 C -0.006 4.006 19 C -0.114 4.114 20 H 0.113 0.887 21 C 0.039 3.961 22 N -0.389 5.389 23 C -0.378 4.378 24 H 0.092 0.908 25 C -0.269 4.269 26 N -0.620 5.620 27 Si 0.803 3.197 28 H -0.208 1.208 29 H -0.221 1.221 30 H -0.199 1.199 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.049 0.951 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.146 0.854 37 H 0.187 0.813 38 H 0.191 0.809 39 H 0.195 0.805 40 H 0.208 0.792 41 H 0.169 0.831 42 H 0.083 0.917 43 H 0.063 0.937 44 H 0.050 0.950 45 H 0.030 0.970 46 H 0.205 0.795 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -4.754 7.741 -32.815 34.049 hybrid contribution -0.480 -1.411 1.367 2.022 sum -5.235 6.330 -31.448 32.503 Atomic orbital electron populations 1.21785 0.94479 1.00861 1.02714 1.22318 0.96464 1.00145 0.91739 0.85775 1.23264 1.03082 0.78127 0.98374 1.48779 1.65033 1.08650 1.11331 1.18452 0.76797 0.83042 0.86220 1.90786 1.56509 1.25366 1.73906 1.19692 1.00475 0.99023 0.92453 1.20923 0.95708 0.98089 0.96749 1.21206 0.99647 0.97057 0.92184 1.19253 0.97387 0.97230 0.96662 1.21949 0.98450 0.97175 0.91006 1.22409 0.96801 0.95551 1.03214 1.23704 0.92920 0.97443 0.90222 1.68039 1.27193 1.18307 1.07330 1.18820 0.95127 0.94052 0.94056 1.21528 0.99037 0.95501 0.92044 1.21973 0.99503 0.98537 0.80586 1.22245 0.99822 0.93839 0.95475 0.88658 1.20904 0.94408 0.94647 0.86184 1.42615 1.15045 1.67660 1.13571 1.19576 0.96328 1.28915 0.92997 0.90814 1.25595 0.97888 1.01679 1.01765 1.69811 1.15975 1.44446 1.31733 0.85205 0.77562 0.77875 0.79087 1.20771 1.22067 1.19936 0.92083 0.90438 0.95070 0.87915 0.87948 0.85379 0.81298 0.80923 0.80472 0.79205 0.83064 0.91680 0.93749 0.94999 0.96964 0.79495 0.94010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 7.99 71.98 0.57 -2.75 16 2 C -0.09 -1.94 3.60 -9.58 -0.03 -1.98 16 3 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 4 C 0.09 1.96 4.74 86.74 0.41 2.37 16 5 N -0.61 -18.69 3.19 -812.75 -2.59 -21.28 16 6 C 0.56 19.45 7.57 86.80 0.66 20.11 16 7 O -0.58 -25.71 17.15 -3.86 -0.07 -25.77 16 8 C -0.11 -2.99 5.60 -20.11 -0.11 -3.10 16 9 C -0.10 -2.24 9.50 22.28 0.21 -2.03 16 10 C -0.08 -1.35 9.74 22.27 0.22 -1.13 16 11 C -0.10 -1.69 5.75 -21.23 -0.12 -1.81 16 12 C -0.06 -0.54 9.88 22.51 0.22 -0.31 16 13 C -0.16 -1.03 10.03 22.16 0.22 -0.81 16 14 C 0.13 1.36 11.15 85.10 0.95 2.31 16 15 N -0.50 -9.15 10.34 -188.65 -1.95 -11.10 16 16 C 0.10 2.03 6.60 40.25 0.27 2.29 16 17 C -0.06 -1.40 7.71 22.85 0.18 -1.22 16 18 C 0.12 4.21 6.30 86.53 0.54 4.76 16 19 C -0.09 -2.97 3.00 -9.90 -0.03 -3.00 16 20 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 21 C 0.16 6.68 4.17 86.38 0.36 7.04 16 22 N -0.75 -39.27 5.33 -343.46 -1.83 -41.10 16 23 C -0.25 -14.30 9.99 84.03 0.84 -13.46 16 24 H 0.07 4.11 7.83 -2.91 -0.02 4.08 16 25 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 26 N -0.97 -61.44 13.06 21.65 0.28 -61.16 16 27 Si 0.97 47.80 29.55 68.60 2.03 49.83 16 28 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 29 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 30 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 31 H 0.06 1.52 6.67 -2.39 -0.02 1.50 16 32 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.03 0.89 7.61 -2.39 -0.02 0.87 16 34 H 0.10 1.73 8.05 -2.39 -0.02 1.71 16 35 H 0.10 1.91 5.49 -2.39 -0.01 1.90 16 36 H 0.13 3.14 7.97 -2.91 -0.02 3.12 16 37 H 0.17 1.51 8.06 -2.91 -0.02 1.49 16 38 H 0.17 0.37 8.06 -2.91 -0.02 0.34 16 39 H 0.18 -0.22 8.06 -2.91 -0.02 -0.25 16 40 H 0.19 0.66 8.06 -2.91 -0.02 0.64 16 41 H 0.15 3.10 5.67 -2.91 -0.02 3.08 16 42 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 43 H 0.04 2.02 7.52 -2.39 -0.02 2.00 16 44 H 0.03 1.25 7.55 -2.39 -0.02 1.24 16 45 H 0.01 0.54 6.85 -2.38 -0.02 0.52 16 46 H 0.37 20.86 7.51 -92.71 -0.70 20.16 16 47 H 0.25 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -82.33 380.57 1.99 -80.34 By element: Atomic # 1 Polarization: 26.77 SS G_CDS: 0.30 Total: 27.07 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: 5.82 Total: 3.16 kcal Atomic # 7 Polarization: -128.55 SS G_CDS: -6.09 Total: -134.63 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -0.07 Total: -25.77 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 2.03 Total: 49.83 kcal Total: -82.33 1.99 -80.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754824221.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.270 kcal (2) G-P(sol) polarization free energy of solvation -82.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds