Wall clock time and date at job start Tue Mar 31 2020 22:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 110.63872 * 2 1 4 4 C 1.54326 * 110.71963 * 236.86231 * 2 1 3 5 5 N 1.47022 * 107.26858 * 263.82776 * 4 2 1 6 6 C 1.34776 * 125.64781 * 181.02240 * 5 4 2 7 7 O 1.21497 * 120.00089 * 180.02562 * 6 5 4 8 8 C 1.48280 * 119.99900 * 0.02562 * 6 5 4 9 9 C 1.40284 * 119.24059 * 179.97438 * 8 6 5 10 10 C 1.36502 * 119.81572 * 179.97438 * 9 8 6 11 11 C 1.40754 * 118.24336 * 0.27782 * 10 9 8 12 12 C 1.40420 * 121.27538 * 180.29339 * 11 10 9 13 13 C 1.36130 * 119.65201 * 179.65575 * 12 11 10 14 14 C 1.39436 * 120.91379 * 359.77007 * 13 12 11 15 15 C 1.35999 * 121.08415 * 359.97438 * 14 13 12 16 16 C 1.40825 * 119.73634 * 359.97438 * 15 14 13 17 17 N 1.31876 * 119.24211 * 359.97438 * 8 6 5 18 18 C 1.47425 * 108.70530 * 1.28839 * 5 4 2 19 19 C 1.55130 * 104.71913 * 335.55402 * 18 5 4 20 20 H 1.09001 * 111.22507 * 279.17251 * 19 18 5 21 21 C 1.53004 * 110.90205 * 155.27553 * 19 18 5 22 22 N 1.46501 * 109.47342 * 72.97702 * 21 19 18 23 23 C 1.36933 * 120.00115 * 179.97438 * 22 21 19 24 24 H 1.07996 * 119.99980 * 359.97438 * 23 22 21 25 25 C 1.38808 * 120.00073 * 180.02562 * 23 22 21 26 26 N 1.31618 * 120.00136 * 180.02562 * 25 23 22 27 27 Si 1.86801 * 119.99879 * 359.97438 * 25 23 22 28 28 H 1.48498 * 109.46990 * 90.00824 * 27 25 23 29 29 H 1.48505 * 109.46973 * 210.00167 * 27 25 23 30 30 H 1.48495 * 109.47401 * 330.00428 * 27 25 23 31 31 H 1.09007 * 109.47106 * 181.68397 * 1 2 3 32 32 H 1.08993 * 109.47325 * 301.68418 * 1 2 3 33 33 H 1.09005 * 109.47541 * 61.68625 * 1 2 3 34 34 H 1.08995 * 109.88591 * 144.41118 * 4 2 1 35 35 H 1.08998 * 110.01108 * 23.31951 * 4 2 1 36 36 H 1.07997 * 120.08744 * 359.96074 * 9 8 6 37 37 H 1.08002 * 120.87411 * 179.97438 * 10 9 8 38 38 H 1.08001 * 120.17484 * 359.42964 * 12 11 10 39 39 H 1.08001 * 119.54171 * 179.74683 * 13 12 11 40 40 H 1.08002 * 119.45915 * 179.97438 * 14 13 12 41 41 H 1.08002 * 120.12739 * 179.97438 * 15 14 13 42 42 H 1.08999 * 110.36471 * 94.47859 * 18 5 4 43 43 H 1.08996 * 110.36980 * 216.80202 * 18 5 4 44 44 H 1.09000 * 109.46755 * 192.97377 * 21 19 18 45 45 H 1.08994 * 109.47123 * 312.97081 * 21 19 18 46 46 H 0.96997 * 119.99667 * 359.97438 * 22 21 19 47 47 H 0.96998 * 120.00198 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0760 -0.7891 -1.2087 5 7 2.3716 -2.1518 -0.7428 6 6 2.8850 -3.1451 -1.4952 7 8 3.0888 -4.2370 -1.0029 8 6 3.2010 -2.9054 -2.9240 9 6 3.7353 -3.9505 -3.6923 10 6 4.0300 -3.7429 -5.0089 11 6 3.7885 -2.4672 -5.5524 12 6 4.0625 -2.1854 -6.9005 13 6 3.8096 -0.9419 -7.3934 14 6 3.2770 0.0568 -6.5791 15 6 2.9941 -0.1809 -5.2703 16 6 3.2403 -1.4547 -4.7226 17 7 2.9733 -1.7147 -3.4432 18 6 2.0075 -2.2537 0.6822 19 6 2.0789 -0.7975 1.2123 20 1 3.1059 -0.5093 1.4370 21 6 1.1814 -0.6184 2.4385 22 7 1.7913 -1.2850 3.5917 23 6 1.1642 -1.2580 4.8087 24 1 0.2203 -0.7449 4.9185 25 6 1.7423 -1.8891 5.9015 26 7 1.1393 -1.8636 7.0712 27 14 3.3754 -2.7759 5.7118 28 1 4.4870 -1.8298 5.9847 29 1 3.4398 -3.9058 6.6733 30 1 3.4977 -3.2971 4.3267 31 1 -0.3634 -1.0273 0.0302 32 1 -0.3633 0.5397 0.8744 33 1 -0.3634 0.4874 -0.9047 34 1 2.9868 -0.3179 -1.5782 35 1 1.3283 -0.8222 -2.0011 36 1 3.9131 -4.9165 -3.2433 37 1 4.4423 -4.5352 -5.6161 38 1 4.4752 -2.9500 -7.5419 39 1 4.0249 -0.7259 -8.4295 40 1 3.0859 1.0353 -6.9946 41 1 2.5822 0.6042 -4.6535 42 1 0.9974 -2.6493 0.7882 43 1 2.7207 -2.8852 1.2118 44 1 1.0662 0.4443 2.6521 45 1 0.2036 -1.0572 2.2402 46 1 2.6393 -1.7454 3.4932 47 1 1.5431 -2.3049 7.8347 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754825385.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:09 Heat of formation + Delta-G solvation = 45.418089 kcal Electronic energy + Delta-G solvation = -28734.330357 eV Core-core repulsion = 24882.532062 eV Total energy + Delta-G solvation = -3851.798295 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.41021 -40.04889 -38.25003 -37.12026 -34.88544 -34.01177 -32.81364 -31.31642 -31.13284 -30.48304 -29.26127 -26.79321 -26.13357 -24.94338 -23.98318 -22.88461 -22.52285 -21.51984 -20.20024 -19.39304 -18.37379 -18.02764 -17.54445 -17.11717 -16.19975 -15.94252 -15.50089 -15.13933 -14.94369 -14.68541 -14.61407 -14.34834 -14.01292 -13.81613 -13.56273 -13.52531 -13.18372 -12.82902 -12.63497 -12.52243 -12.45907 -12.09370 -12.04822 -11.92042 -11.78708 -11.68176 -11.24881 -11.02355 -10.87023 -10.57944 -10.48628 -10.41734 -10.22714 -10.02964 -9.67177 -9.55541 -9.23430 -8.86263 -8.73820 -8.57743 -7.20136 -5.73617 -3.09163 -0.20177 0.26732 1.51827 2.11686 2.82245 2.99262 3.42265 3.46543 3.50045 3.66404 3.74166 4.10228 4.24799 4.36308 4.41222 4.57121 4.63360 4.67128 4.69758 4.73525 4.88931 4.94802 5.02232 5.26431 5.31342 5.43265 5.48926 5.51592 5.56514 5.59070 5.61903 5.66334 5.76056 5.82430 5.87867 5.94658 5.94966 5.98074 6.04010 6.12674 6.16054 6.22284 6.29785 6.38388 6.42212 6.64038 6.76329 7.28365 7.47791 8.01950 8.04016 8.45283 9.24222 9.96882 10.16181 11.44699 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020472 B = 0.002511 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.424613 B =11147.778630 C =12119.913253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.102 4.102 3 H 0.089 0.911 4 C 0.122 3.878 5 N -0.594 5.594 6 C 0.575 3.425 7 O -0.532 6.532 8 C 0.125 3.875 9 C -0.124 4.124 10 C -0.063 4.063 11 C -0.089 4.089 12 C -0.101 4.101 13 C -0.109 4.109 14 C -0.105 4.105 15 C -0.084 4.084 16 C 0.121 3.879 17 N -0.436 5.436 18 C 0.112 3.888 19 C -0.106 4.106 20 H 0.085 0.915 21 C 0.170 3.830 22 N -0.757 5.757 23 C -0.243 4.243 24 H 0.090 0.910 25 C 0.004 3.996 26 N -0.934 5.934 27 Si 0.883 3.117 28 H -0.285 1.285 29 H -0.291 1.291 30 H -0.276 1.276 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.151 0.849 37 H 0.146 0.854 38 H 0.132 0.868 39 H 0.129 0.871 40 H 0.132 0.868 41 H 0.139 0.861 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.033 0.967 45 H 0.034 0.966 46 H 0.361 0.639 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.094 3.322 -33.955 34.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.121 4.121 3 H 0.108 0.892 4 C 0.000 4.000 5 N -0.326 5.326 6 C 0.362 3.638 7 O -0.408 6.408 8 C -0.029 4.029 9 C -0.144 4.144 10 C -0.089 4.089 11 C -0.091 4.091 12 C -0.120 4.120 13 C -0.127 4.127 14 C -0.125 4.125 15 C -0.102 4.102 16 C -0.002 4.002 17 N -0.148 5.148 18 C -0.009 4.009 19 C -0.126 4.126 20 H 0.103 0.897 21 C 0.042 3.958 22 N -0.403 5.403 23 C -0.373 4.373 24 H 0.108 0.892 25 C -0.191 4.191 26 N -0.582 5.582 27 Si 0.713 3.287 28 H -0.211 1.211 29 H -0.217 1.217 30 H -0.202 1.202 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.169 0.831 37 H 0.164 0.836 38 H 0.150 0.850 39 H 0.147 0.853 40 H 0.150 0.850 41 H 0.157 0.843 42 H 0.095 0.905 43 H 0.099 0.901 44 H 0.051 0.949 45 H 0.052 0.948 46 H 0.193 0.807 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.693 3.450 -33.063 33.572 hybrid contribution 1.571 -1.327 -0.554 2.129 sum 6.264 2.123 -33.617 34.261 Atomic orbital electron populations 1.21845 0.94031 1.02353 1.01916 1.22295 0.96719 0.99312 0.93797 0.89223 1.22229 1.00809 0.80934 0.96061 1.48368 1.60472 1.11924 1.11799 1.17542 0.78342 0.83647 0.84310 1.90813 1.54062 1.23482 1.72456 1.21340 0.96880 0.89917 0.94717 1.21765 0.97801 1.00746 0.94102 1.21467 0.96634 0.95842 0.94966 1.19003 1.00070 0.94692 0.95355 1.21011 0.99769 0.97640 0.93550 1.21011 0.98237 0.93142 1.00312 1.20954 0.98205 0.99775 0.93570 1.20898 0.99068 0.94858 0.95395 1.18932 0.97763 0.94402 0.89127 1.68144 1.14441 1.20262 1.11961 1.22490 1.01475 0.98045 0.78903 1.22712 1.01166 0.93477 0.95234 0.89694 1.20623 0.94275 0.96349 0.84522 1.42756 1.25031 1.65462 1.07038 1.19034 1.04489 1.29090 0.84683 0.89186 1.24666 0.98378 1.00611 0.95472 1.69699 1.39655 1.48791 1.00079 0.86572 0.85107 0.79780 0.77261 1.21127 1.21717 1.20174 0.92424 0.91402 0.92825 0.90791 0.90652 0.83106 0.83638 0.85049 0.85350 0.85032 0.84309 0.90467 0.90126 0.94915 0.94846 0.80689 0.93087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 7.91 37.16 0.29 -1.32 16 2 C -0.10 -1.20 3.47 -88.79 -0.31 -1.50 16 3 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 4 C 0.12 1.45 4.97 -3.06 -0.02 1.44 16 5 N -0.59 -8.72 3.32 -171.33 -0.57 -9.29 16 6 C 0.58 8.96 7.84 -12.13 -0.10 8.86 16 7 O -0.53 -9.82 16.53 5.37 0.09 -9.73 16 8 C 0.13 1.61 6.73 -82.95 -0.56 1.05 16 9 C -0.12 -1.31 9.54 -39.44 -0.38 -1.69 16 10 C -0.06 -0.52 9.88 -39.26 -0.39 -0.90 16 11 C -0.09 -0.78 5.75 -106.71 -0.61 -1.39 16 12 C -0.10 -0.63 9.77 -39.52 -0.39 -1.01 16 13 C -0.11 -0.58 9.96 -39.89 -0.40 -0.98 16 14 C -0.11 -0.61 9.94 -39.94 -0.40 -1.00 16 15 C -0.08 -0.65 9.99 -39.41 -0.39 -1.04 16 16 C 0.12 1.22 6.61 -84.86 -0.56 0.66 16 17 N -0.44 -5.12 6.76 -7.54 -0.05 -5.17 16 18 C 0.11 1.82 6.01 -2.41 -0.01 1.80 16 19 C -0.11 -1.61 2.93 -88.35 -0.26 -1.87 16 20 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 21 C 0.17 3.16 4.54 -4.04 -0.02 3.14 16 22 N -0.76 -18.02 5.35 -59.91 -0.32 -18.34 16 23 C -0.24 -6.93 10.47 -15.06 -0.16 -7.09 16 24 H 0.09 2.73 8.06 -52.49 -0.42 2.30 16 25 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 26 N -0.93 -29.71 13.97 55.49 0.78 -28.94 16 27 Si 0.88 22.70 27.74 -169.99 -4.71 17.99 16 28 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 29 H -0.29 -7.59 7.11 56.52 0.40 -7.18 16 30 H -0.28 -6.77 6.52 56.52 0.37 -6.40 16 31 H 0.06 0.71 7.32 -51.92 -0.38 0.33 16 32 H 0.07 0.79 7.12 -51.93 -0.37 0.42 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.86 7.40 -51.93 -0.38 0.47 16 35 H 0.08 0.86 7.23 -51.93 -0.38 0.48 16 36 H 0.15 1.53 7.60 -52.49 -0.40 1.13 16 37 H 0.15 0.71 8.06 -52.49 -0.42 0.28 16 38 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 39 H 0.13 0.36 8.06 -52.49 -0.42 -0.06 16 40 H 0.13 0.43 8.06 -52.49 -0.42 0.01 16 41 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 42 H 0.08 1.28 7.46 -51.93 -0.39 0.89 16 43 H 0.08 1.47 8.03 -51.93 -0.42 1.05 16 44 H 0.03 0.61 8.05 -51.93 -0.42 0.20 16 45 H 0.03 0.63 6.94 -51.93 -0.36 0.27 16 46 H 0.36 8.51 5.53 -40.82 -0.23 8.28 16 47 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 LS Contribution 379.96 15.07 5.73 5.73 Total: -1.00 -34.88 379.96 -10.50 -45.38 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -6.69 Total: 5.19 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -4.74 Total: -2.81 kcal Atomic # 7 Polarization: -61.58 SS G_CDS: -0.17 Total: -61.75 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.09 Total: -9.73 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -4.71 Total: 17.99 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.88 -10.50 -45.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754825385.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.799 kcal (2) G-P(sol) polarization free energy of solvation -34.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds