Wall clock time and date at job start Tue Mar 31 2020 22:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 110.63872 * 2 1 4 4 C 1.54326 * 110.71963 * 236.86231 * 2 1 3 5 5 N 1.47022 * 107.26858 * 263.82776 * 4 2 1 6 6 C 1.34776 * 125.64781 * 181.02240 * 5 4 2 7 7 O 1.21497 * 120.00089 * 180.02562 * 6 5 4 8 8 C 1.48280 * 119.99900 * 0.02562 * 6 5 4 9 9 C 1.40284 * 119.24059 * 179.97438 * 8 6 5 10 10 C 1.36502 * 119.81572 * 179.97438 * 9 8 6 11 11 C 1.40754 * 118.24336 * 0.27782 * 10 9 8 12 12 C 1.40420 * 121.27538 * 180.29339 * 11 10 9 13 13 C 1.36130 * 119.65201 * 179.65575 * 12 11 10 14 14 C 1.39436 * 120.91379 * 359.77007 * 13 12 11 15 15 C 1.35999 * 121.08415 * 359.97438 * 14 13 12 16 16 C 1.40825 * 119.73634 * 359.97438 * 15 14 13 17 17 N 1.31876 * 119.24211 * 359.97438 * 8 6 5 18 18 C 1.47425 * 108.70530 * 1.28839 * 5 4 2 19 19 C 1.55130 * 104.71913 * 335.55402 * 18 5 4 20 20 H 1.09001 * 111.22507 * 279.17251 * 19 18 5 21 21 C 1.53004 * 110.90205 * 155.27553 * 19 18 5 22 22 N 1.46501 * 109.47342 * 72.97702 * 21 19 18 23 23 C 1.36933 * 120.00115 * 179.97438 * 22 21 19 24 24 H 1.07996 * 119.99980 * 359.97438 * 23 22 21 25 25 C 1.38808 * 120.00073 * 180.02562 * 23 22 21 26 26 N 1.31618 * 120.00136 * 180.02562 * 25 23 22 27 27 Si 1.86801 * 119.99879 * 359.97438 * 25 23 22 28 28 H 1.48498 * 109.46990 * 90.00824 * 27 25 23 29 29 H 1.48505 * 109.46973 * 210.00167 * 27 25 23 30 30 H 1.48495 * 109.47401 * 330.00428 * 27 25 23 31 31 H 1.09007 * 109.47106 * 181.68397 * 1 2 3 32 32 H 1.08993 * 109.47325 * 301.68418 * 1 2 3 33 33 H 1.09005 * 109.47541 * 61.68625 * 1 2 3 34 34 H 1.08995 * 109.88591 * 144.41118 * 4 2 1 35 35 H 1.08998 * 110.01108 * 23.31951 * 4 2 1 36 36 H 1.07997 * 120.08744 * 359.96074 * 9 8 6 37 37 H 1.08002 * 120.87411 * 179.97438 * 10 9 8 38 38 H 1.08001 * 120.17484 * 359.42964 * 12 11 10 39 39 H 1.08001 * 119.54171 * 179.74683 * 13 12 11 40 40 H 1.08002 * 119.45915 * 179.97438 * 14 13 12 41 41 H 1.08002 * 120.12739 * 179.97438 * 15 14 13 42 42 H 1.08999 * 110.36471 * 94.47859 * 18 5 4 43 43 H 1.08996 * 110.36980 * 216.80202 * 18 5 4 44 44 H 1.09000 * 109.46755 * 192.97377 * 21 19 18 45 45 H 1.08994 * 109.47123 * 312.97081 * 21 19 18 46 46 H 0.96997 * 119.99667 * 359.97438 * 22 21 19 47 47 H 0.96998 * 120.00198 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0760 -0.7891 -1.2087 5 7 2.3716 -2.1518 -0.7428 6 6 2.8850 -3.1451 -1.4952 7 8 3.0888 -4.2370 -1.0029 8 6 3.2010 -2.9054 -2.9240 9 6 3.7353 -3.9505 -3.6923 10 6 4.0300 -3.7429 -5.0089 11 6 3.7885 -2.4672 -5.5524 12 6 4.0625 -2.1854 -6.9005 13 6 3.8096 -0.9419 -7.3934 14 6 3.2770 0.0568 -6.5791 15 6 2.9941 -0.1809 -5.2703 16 6 3.2403 -1.4547 -4.7226 17 7 2.9733 -1.7147 -3.4432 18 6 2.0075 -2.2537 0.6822 19 6 2.0789 -0.7975 1.2123 20 1 3.1059 -0.5093 1.4370 21 6 1.1814 -0.6184 2.4385 22 7 1.7913 -1.2850 3.5917 23 6 1.1642 -1.2580 4.8087 24 1 0.2203 -0.7449 4.9185 25 6 1.7423 -1.8891 5.9015 26 7 1.1393 -1.8636 7.0712 27 14 3.3754 -2.7759 5.7118 28 1 4.4870 -1.8298 5.9847 29 1 3.4398 -3.9058 6.6733 30 1 3.4977 -3.2971 4.3267 31 1 -0.3634 -1.0273 0.0302 32 1 -0.3633 0.5397 0.8744 33 1 -0.3634 0.4874 -0.9047 34 1 2.9868 -0.3179 -1.5782 35 1 1.3283 -0.8222 -2.0011 36 1 3.9131 -4.9165 -3.2433 37 1 4.4423 -4.5352 -5.6161 38 1 4.4752 -2.9500 -7.5419 39 1 4.0249 -0.7259 -8.4295 40 1 3.0859 1.0353 -6.9946 41 1 2.5822 0.6042 -4.6535 42 1 0.9974 -2.6493 0.7882 43 1 2.7207 -2.8852 1.2118 44 1 1.0662 0.4443 2.6521 45 1 0.2036 -1.0572 2.2402 46 1 2.6393 -1.7454 3.4932 47 1 1.5431 -2.3049 7.8347 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754825385.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:08 Heat of formation + Delta-G solvation = 23.625722 kcal Electronic energy + Delta-G solvation = -28735.275345 eV Core-core repulsion = 24882.532062 eV Total energy + Delta-G solvation = -3852.743283 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.17306 -41.07929 -39.37849 -37.83893 -36.64328 -34.79899 -34.16892 -33.14924 -31.85307 -31.09973 -30.62587 -27.92211 -27.37604 -26.00275 -24.79986 -24.28499 -23.18794 -22.94197 -21.18094 -20.76044 -19.57653 -18.99357 -18.71885 -18.05404 -17.33588 -16.99886 -16.70408 -16.33011 -15.98615 -15.69945 -15.54558 -15.29374 -15.21333 -14.90547 -14.74795 -14.47168 -14.29488 -14.14405 -14.06238 -13.79760 -13.63912 -13.22141 -13.11308 -12.83347 -12.70846 -12.66304 -12.58920 -12.44430 -12.19024 -11.85247 -11.69957 -11.66892 -11.62406 -11.52671 -11.39208 -10.97684 -10.51485 -9.95559 -9.69425 -9.29812 -9.27130 -8.03969 -5.36446 -0.87288 -0.36304 0.91873 1.32325 1.35853 1.38047 1.44720 1.72909 2.15956 2.46015 2.82403 3.06775 3.25762 3.32269 3.52269 3.57438 3.61278 3.73701 3.80607 3.84196 3.96801 4.13198 4.21343 4.25069 4.26504 4.38169 4.47906 4.50265 4.54511 4.72366 4.75125 4.77537 4.80477 4.88923 4.95701 5.00299 5.01518 5.09094 5.15614 5.17443 5.26443 5.28938 5.38555 5.44072 5.49435 5.50448 5.75720 5.86433 6.20258 6.31013 6.53669 6.90774 7.06680 7.83557 8.00739 9.17472 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020472 B = 0.002511 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.424613 B =11147.778630 C =12119.913253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.089 4.089 3 H 0.116 0.884 4 C 0.130 3.870 5 N -0.595 5.595 6 C 0.569 3.431 7 O -0.575 6.575 8 C 0.099 3.901 9 C -0.144 4.144 10 C -0.048 4.048 11 C -0.101 4.101 12 C -0.104 4.104 13 C -0.102 4.102 14 C -0.094 4.094 15 C -0.103 4.103 16 C 0.096 3.904 17 N -0.443 5.443 18 C 0.114 3.886 19 C -0.097 4.097 20 H 0.086 0.914 21 C 0.169 3.831 22 N -0.762 5.762 23 C -0.229 4.229 24 H 0.062 0.938 25 C -0.062 4.062 26 N -0.982 5.982 27 Si 0.949 3.051 28 H -0.275 1.275 29 H -0.296 1.296 30 H -0.261 1.261 31 H 0.041 0.959 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.145 0.855 37 H 0.181 0.819 38 H 0.160 0.840 39 H 0.162 0.838 40 H 0.161 0.839 41 H 0.145 0.855 42 H 0.067 0.933 43 H 0.054 0.946 44 H 0.041 0.959 45 H 0.033 0.967 46 H 0.363 0.637 47 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.500 4.818 -38.732 39.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.109 4.109 3 H 0.134 0.866 4 C 0.008 3.992 5 N -0.326 5.326 6 C 0.357 3.643 7 O -0.454 6.454 8 C -0.054 4.054 9 C -0.165 4.165 10 C -0.074 4.074 11 C -0.103 4.103 12 C -0.123 4.123 13 C -0.120 4.120 14 C -0.114 4.114 15 C -0.122 4.122 16 C -0.027 4.027 17 N -0.155 5.155 18 C -0.009 4.009 19 C -0.117 4.117 20 H 0.104 0.896 21 C 0.044 3.956 22 N -0.407 5.407 23 C -0.360 4.360 24 H 0.080 0.920 25 C -0.254 4.254 26 N -0.632 5.632 27 Si 0.777 3.223 28 H -0.202 1.202 29 H -0.222 1.222 30 H -0.186 1.186 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.163 0.837 37 H 0.199 0.801 38 H 0.178 0.822 39 H 0.179 0.821 40 H 0.178 0.822 41 H 0.163 0.837 42 H 0.085 0.915 43 H 0.072 0.928 44 H 0.059 0.941 45 H 0.051 0.949 46 H 0.195 0.805 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.094 4.987 -37.900 38.709 hybrid contribution 1.054 -1.652 0.687 2.077 sum 7.148 3.335 -37.213 38.039 Atomic orbital electron populations 1.21839 0.93504 1.01626 1.03027 1.22326 0.97052 0.99996 0.91487 0.86588 1.22310 1.01390 0.79350 0.96134 1.48450 1.60165 1.12983 1.11023 1.18103 0.77515 0.83087 0.85604 1.90763 1.55917 1.25096 1.73660 1.20969 0.99666 0.91426 0.93312 1.21772 0.99309 1.00153 0.95290 1.21840 0.94851 0.96683 0.93983 1.19319 0.99869 0.94478 0.96590 1.21369 0.99395 0.98976 0.92532 1.21483 0.96325 0.92431 1.01773 1.21376 0.96136 1.01196 0.92650 1.21092 1.00240 0.94227 0.96604 1.19361 0.98673 0.95921 0.88782 1.67998 1.14657 1.19680 1.13206 1.22314 1.00121 0.98306 0.80129 1.22559 1.00644 0.93506 0.94972 0.89557 1.20770 0.94691 0.95984 0.84201 1.42825 1.25068 1.65873 1.06945 1.19046 1.03320 1.27214 0.86413 0.91954 1.25430 1.02310 1.02365 0.95261 1.69864 1.41696 1.50653 1.01028 0.85501 0.80781 0.78393 0.77673 1.20151 1.22248 1.18609 0.93991 0.91866 0.90250 0.90026 0.89797 0.83693 0.80140 0.82215 0.82079 0.82170 0.83694 0.91461 0.92772 0.94122 0.94927 0.80474 0.93362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 7.91 71.98 0.57 -2.41 16 2 C -0.09 -1.94 3.47 -9.61 -0.03 -1.97 16 3 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 4 C 0.13 2.95 4.97 86.73 0.43 3.38 16 5 N -0.60 -17.90 3.32 -814.28 -2.71 -20.61 16 6 C 0.57 18.61 7.84 86.92 0.68 19.30 16 7 O -0.57 -22.69 16.53 -3.70 -0.06 -22.75 16 8 C 0.10 2.60 6.73 42.31 0.28 2.89 16 9 C -0.14 -3.12 9.54 22.36 0.21 -2.91 16 10 C -0.05 -0.70 9.88 22.48 0.22 -0.48 16 11 C -0.10 -1.52 5.75 -21.22 -0.12 -1.64 16 12 C -0.10 -0.87 9.77 22.31 0.22 -0.65 16 13 C -0.10 -0.60 9.96 22.07 0.22 -0.38 16 14 C -0.09 -0.70 9.94 22.04 0.22 -0.48 16 15 C -0.10 -1.34 9.99 22.38 0.22 -1.12 16 16 C 0.10 1.80 6.61 40.47 0.27 2.07 16 17 N -0.44 -10.22 6.76 -177.76 -1.20 -11.42 16 18 C 0.11 3.80 6.01 86.93 0.52 4.32 16 19 C -0.10 -2.90 2.93 -9.33 -0.03 -2.93 16 20 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 21 C 0.17 6.30 4.54 86.38 0.39 6.69 16 22 N -0.76 -36.45 5.35 -343.46 -1.84 -38.29 16 23 C -0.23 -13.32 10.47 84.03 0.88 -12.44 16 24 H 0.06 3.91 8.06 -2.91 -0.02 3.89 16 25 C -0.06 -3.77 5.50 84.86 0.47 -3.30 16 26 N -0.98 -64.22 13.97 21.65 0.30 -63.91 16 27 Si 0.95 47.75 27.74 68.60 1.90 49.66 16 28 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 29 H -0.30 -15.05 7.11 99.48 0.71 -14.35 16 30 H -0.26 -12.34 6.52 99.48 0.65 -11.70 16 31 H 0.04 1.01 7.32 -2.38 -0.02 0.99 16 32 H 0.06 1.39 7.12 -2.39 -0.02 1.37 16 33 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 34 H 0.08 1.77 7.40 -2.39 -0.02 1.75 16 35 H 0.08 1.80 7.23 -2.39 -0.02 1.78 16 36 H 0.15 3.15 7.60 -2.91 -0.02 3.13 16 37 H 0.18 1.19 8.06 -2.91 -0.02 1.17 16 38 H 0.16 0.38 8.06 -2.91 -0.02 0.36 16 39 H 0.16 -0.07 8.06 -2.91 -0.02 -0.09 16 40 H 0.16 0.25 8.06 -2.91 -0.02 0.23 16 41 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 42 H 0.07 2.34 7.46 -2.39 -0.02 2.33 16 43 H 0.05 2.08 8.03 -2.39 -0.02 2.06 16 44 H 0.04 1.48 8.05 -2.39 -0.02 1.46 16 45 H 0.03 1.24 6.94 -2.39 -0.02 1.22 16 46 H 0.36 17.04 5.53 -92.71 -0.51 16.52 16 47 H 0.26 16.08 8.31 -92.71 -0.77 15.31 16 Total: -1.00 -79.72 379.96 2.44 -77.28 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: 0.42 Total: 22.11 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: 5.63 Total: 7.94 kcal Atomic # 7 Polarization: -128.79 SS G_CDS: -5.44 Total: -134.23 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.06 Total: -22.75 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 1.90 Total: 49.66 kcal Total: -79.72 2.44 -77.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754825385.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.906 kcal (2) G-P(sol) polarization free energy of solvation -79.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds