Wall clock time and date at job start Tue Mar 31 2020 22:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.80449 * 2 1 4 4 C 1.54951 * 110.73850 * 236.71239 * 2 1 3 5 5 N 1.48120 * 103.25717 * 279.04211 * 4 2 1 6 6 C 1.34771 * 127.03362 * 140.66818 * 5 4 2 7 7 O 1.21609 * 119.99829 * 175.52527 * 6 5 4 8 8 C 1.47443 * 120.00349 * 355.52952 * 6 5 4 9 9 C 1.38955 * 121.16765 * 41.07765 * 8 6 5 10 10 N 1.32200 * 121.31279 * 180.02562 * 9 8 6 11 11 C 1.31188 * 123.69784 * 359.97438 * 10 9 8 12 12 C 1.40387 * 120.91944 * 0.02562 * 11 10 9 13 13 C 1.40389 * 122.14571 * 179.97438 * 12 11 10 14 14 C 1.36234 * 119.48594 * 179.97438 * 13 12 11 15 15 C 1.39290 * 121.10603 * 359.97438 * 14 13 12 16 16 C 1.36440 * 120.94640 * 0.02562 * 15 14 13 17 17 C 1.39690 * 119.43980 * 359.68576 * 16 15 14 18 18 C 1.47490 * 105.93103 * 320.71157 * 5 4 2 19 19 C 1.54005 * 107.08351 * 25.44258 * 18 5 4 20 20 H 1.09002 * 110.32792 * 239.69931 * 19 18 5 21 21 C 1.53000 * 110.32616 * 117.59209 * 19 18 5 22 22 N 1.46503 * 109.47321 * 66.44964 * 21 19 18 23 23 C 1.36932 * 120.00256 * 180.27540 * 22 21 19 24 24 H 1.08002 * 119.99578 * 359.72890 * 23 22 21 25 25 C 1.38814 * 120.00356 * 179.72564 * 23 22 21 26 26 N 1.31616 * 120.00092 * 179.97438 * 25 23 22 27 27 Si 1.86796 * 119.99695 * 0.02562 * 25 23 22 28 28 H 1.48502 * 109.47535 * 90.00005 * 27 25 23 29 29 H 1.48501 * 109.47350 * 210.00119 * 27 25 23 30 30 H 1.48501 * 109.47418 * 329.99588 * 27 25 23 31 31 H 1.08999 * 109.47210 * 296.70686 * 1 2 3 32 32 H 1.09007 * 109.46672 * 56.70343 * 1 2 3 33 33 H 1.08999 * 109.47316 * 176.70169 * 1 2 3 34 34 H 1.08998 * 110.66417 * 160.59826 * 4 2 1 35 35 H 1.09003 * 110.80299 * 37.55234 * 4 2 1 36 36 H 1.07995 * 119.34334 * 0.02562 * 9 8 6 37 37 H 1.08004 * 119.54537 * 180.02562 * 11 10 9 38 38 H 1.08003 * 120.25868 * 0.02562 * 13 12 11 39 39 H 1.08001 * 119.44329 * 180.02562 * 14 13 12 40 40 H 1.08002 * 119.52512 * 179.97438 * 15 14 13 41 41 H 1.08003 * 120.27917 * 180.02562 * 16 15 14 42 42 H 1.09006 * 109.90914 * 266.08796 * 18 5 4 43 43 H 1.08991 * 110.07501 * 144.89716 * 18 5 4 44 44 H 1.09003 * 109.46650 * 306.45349 * 21 19 18 45 45 H 1.08993 * 109.47379 * 186.44956 * 21 19 18 46 46 H 0.96999 * 119.99887 * 0.02562 * 22 21 19 47 47 H 0.97003 * 119.99819 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9171 1.0189 0.0000 4 6 2.0787 -0.7953 -1.2113 5 7 1.9870 -2.2039 -0.7625 6 6 1.6219 -3.2695 -1.5025 7 8 1.6688 -4.3866 -1.0243 8 6 1.1656 -3.0809 -2.8918 9 6 1.7988 -2.1814 -3.7408 10 7 1.3918 -2.0097 -4.9868 11 6 0.3815 -2.6562 -5.5182 12 6 -0.3472 -3.5951 -4.7711 13 6 -1.4328 -4.3010 -5.3135 14 6 -2.1018 -5.2006 -4.5394 15 6 -1.7265 -5.4327 -3.2182 16 6 -0.6765 -4.7643 -2.6594 17 6 0.0352 -3.8392 -3.4268 18 6 2.3761 -2.2016 0.6601 19 6 2.0775 -0.7938 1.2086 20 1 2.9906 -0.3323 1.5845 21 6 1.0252 -0.8674 2.3168 22 7 1.5801 -1.5797 3.4706 23 6 0.8137 -1.7741 4.5886 24 1 -0.1984 -1.3985 4.6214 25 6 1.3375 -2.4540 5.6796 26 7 0.6009 -2.6405 6.7543 27 14 3.0881 -3.1031 5.6229 28 1 4.0176 -2.0658 6.1379 29 1 3.1916 -4.3223 6.4643 30 1 3.4470 -3.4373 4.2212 31 1 -0.3633 0.4619 0.9180 32 1 -0.3633 0.5642 -0.8590 33 1 -0.3634 -1.0259 -0.0591 34 1 3.1145 -0.5226 -1.4132 35 1 1.4602 -0.6319 -2.0940 36 1 2.6401 -1.6113 -3.3756 37 1 0.1064 -2.4634 -6.5447 38 1 -1.7348 -4.1328 -6.3367 39 1 -2.9365 -5.7436 -4.9575 40 1 -2.2751 -6.1514 -2.6275 41 1 -0.3945 -4.9529 -1.6340 42 1 3.4402 -2.4187 0.7543 43 1 1.7960 -2.9442 1.2078 44 1 0.1473 -1.3989 1.9495 45 1 0.7407 0.1415 2.6153 46 1 2.4891 -1.9167 3.4411 47 1 0.9671 -3.1152 7.5168 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754828107.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:17 Heat of formation + Delta-G solvation = 20.666608 kcal Electronic energy + Delta-G solvation = -29297.619422 eV Core-core repulsion = 25444.747822 eV Total energy + Delta-G solvation = -3852.871600 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.08662 -40.98210 -39.21180 -38.38436 -36.63277 -34.46440 -33.75910 -33.14035 -32.22698 -31.35579 -30.37261 -28.21499 -27.07224 -25.91573 -24.66101 -24.52418 -23.69159 -22.96885 -20.78946 -20.64189 -19.54698 -19.27857 -18.52102 -18.14232 -17.51089 -17.04709 -16.77509 -16.63283 -15.99491 -15.78819 -15.63456 -15.18702 -15.13862 -14.94557 -14.78511 -14.48118 -14.35143 -14.26429 -14.03973 -13.76337 -13.36796 -13.27487 -13.14120 -13.03955 -12.90373 -12.81852 -12.80498 -12.33574 -12.20348 -11.89253 -11.75676 -11.70181 -11.42742 -11.36479 -11.10355 -10.99982 -10.50750 -10.14230 -9.85320 -9.33443 -9.17406 -8.07124 -5.40435 -0.94194 -0.18370 0.61702 1.33383 1.37714 1.44108 1.49651 1.77904 2.05492 2.44247 2.97176 3.13530 3.24215 3.33356 3.43190 3.48352 3.56061 3.65742 3.68075 3.84037 3.87927 3.97113 4.19085 4.21289 4.21975 4.25250 4.44964 4.49289 4.50586 4.56511 4.58533 4.70106 4.70768 4.78681 4.87365 4.91337 4.96321 4.98942 5.02275 5.10194 5.18096 5.27616 5.35243 5.43437 5.47319 5.48675 5.71295 5.82402 6.16899 6.35203 6.78746 6.91858 7.03832 7.79744 7.98441 9.14667 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015035 B = 0.002984 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.926615 B = 9382.294090 C =10142.494140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.086 4.086 3 H 0.130 0.870 4 C 0.094 3.906 5 N -0.607 5.607 6 C 0.576 3.424 7 O -0.582 6.582 8 C -0.193 4.193 9 C 0.128 3.872 10 N -0.512 5.512 11 C 0.190 3.810 12 C -0.134 4.134 13 C -0.067 4.067 14 C -0.124 4.124 15 C -0.086 4.086 16 C -0.148 4.148 17 C -0.009 4.009 18 C 0.110 3.890 19 C -0.098 4.098 20 H 0.108 0.892 21 C 0.166 3.834 22 N -0.759 5.759 23 C -0.235 4.235 24 H 0.055 0.945 25 C -0.064 4.064 26 N -0.984 5.984 27 Si 0.954 3.046 28 H -0.269 1.269 29 H -0.297 1.297 30 H -0.257 1.257 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.025 0.975 34 H 0.113 0.887 35 H 0.097 0.903 36 H 0.177 0.823 37 H 0.213 0.787 38 H 0.183 0.817 39 H 0.165 0.835 40 H 0.141 0.859 41 H 0.105 0.895 42 H 0.075 0.925 43 H 0.044 0.956 44 H 0.012 0.988 45 H 0.038 0.962 46 H 0.365 0.635 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.676 3.909 -33.683 33.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.105 4.105 3 H 0.147 0.853 4 C -0.027 4.027 5 N -0.339 5.339 6 C 0.366 3.634 7 O -0.464 6.464 8 C -0.198 4.198 9 C -0.016 4.016 10 N -0.219 5.219 11 C 0.019 3.981 12 C -0.136 4.136 13 C -0.086 4.086 14 C -0.142 4.142 15 C -0.105 4.105 16 C -0.166 4.166 17 C -0.014 4.014 18 C -0.013 4.013 19 C -0.118 4.118 20 H 0.127 0.873 21 C 0.040 3.960 22 N -0.405 5.405 23 C -0.366 4.366 24 H 0.073 0.927 25 C -0.255 4.255 26 N -0.635 5.635 27 Si 0.781 3.219 28 H -0.195 1.195 29 H -0.224 1.224 30 H -0.182 1.182 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.045 0.955 34 H 0.130 0.870 35 H 0.115 0.885 36 H 0.194 0.806 37 H 0.230 0.770 38 H 0.201 0.799 39 H 0.182 0.818 40 H 0.159 0.841 41 H 0.123 0.877 42 H 0.093 0.907 43 H 0.062 0.938 44 H 0.030 0.970 45 H 0.056 0.944 46 H 0.198 0.802 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.307 3.920 -33.732 33.960 hybrid contribution 0.330 -1.707 2.096 2.723 sum 0.023 2.213 -31.636 31.713 Atomic orbital electron populations 1.21797 0.95063 1.00551 1.02641 1.22300 0.95956 1.00449 0.91812 0.85257 1.23208 1.03486 0.77857 0.98182 1.48745 1.65264 1.08596 1.11270 1.17947 0.76727 0.83148 0.85587 1.90779 1.56409 1.25267 1.73900 1.21688 1.00944 1.02871 0.94302 1.23066 0.97581 0.92384 0.88554 1.67275 1.15691 1.26155 1.12789 1.24042 0.86784 0.86632 1.00651 1.19293 1.00116 1.01277 0.92893 1.21529 0.91987 0.93340 1.01740 1.21379 1.01123 0.98709 0.92972 1.21433 0.94758 0.97585 0.96706 1.21065 0.97377 0.97922 1.00259 1.19091 0.93408 0.94680 0.94255 1.22084 0.99984 0.98470 0.80721 1.22338 1.00040 0.94063 0.95331 0.87336 1.20906 0.94621 0.94828 0.85637 1.42777 1.14172 1.68972 1.14549 1.19020 0.96407 1.28928 0.92239 0.92746 1.25513 1.02571 1.01590 0.95830 1.69884 1.38587 1.48628 1.06355 0.85423 0.80551 0.77829 0.78105 1.19464 1.22405 1.18192 0.92306 0.90506 0.95537 0.86956 0.88503 0.80601 0.77048 0.79942 0.81784 0.84145 0.87709 0.90725 0.93773 0.96972 0.94450 0.80156 0.93287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 7.99 71.98 0.57 -2.64 16 2 C -0.09 -1.64 3.60 -9.58 -0.03 -1.68 16 3 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 4 C 0.09 1.63 4.92 86.74 0.43 2.06 16 5 N -0.61 -16.76 3.19 -813.20 -2.59 -19.35 16 6 C 0.58 18.78 7.23 86.67 0.63 19.41 16 7 O -0.58 -24.39 15.52 -4.06 -0.06 -24.46 16 8 C -0.19 -5.08 5.62 -18.60 -0.10 -5.19 16 9 C 0.13 2.55 8.96 84.81 0.76 3.31 16 10 N -0.51 -9.02 10.22 -193.72 -1.98 -11.00 16 11 C 0.19 2.48 11.00 85.31 0.94 3.42 16 12 C -0.13 -2.25 5.74 -21.33 -0.12 -2.38 16 13 C -0.07 -0.69 9.82 22.33 0.22 -0.48 16 14 C -0.12 -1.52 9.94 22.06 0.22 -1.30 16 15 C -0.09 -1.66 9.96 22.10 0.22 -1.44 16 16 C -0.15 -4.05 9.28 22.20 0.21 -3.85 16 17 C -0.01 -0.23 5.90 -19.94 -0.12 -0.35 16 18 C 0.11 3.47 6.29 86.53 0.54 4.02 16 19 C -0.10 -2.68 3.00 -9.90 -0.03 -2.71 16 20 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 21 C 0.17 6.30 4.17 86.38 0.36 6.66 16 22 N -0.76 -36.45 5.13 -343.45 -1.76 -38.21 16 23 C -0.23 -13.92 10.47 84.03 0.88 -13.04 16 24 H 0.05 3.53 8.06 -2.91 -0.02 3.50 16 25 C -0.06 -3.88 5.50 84.86 0.47 -3.42 16 26 N -0.98 -64.99 13.97 21.65 0.30 -64.69 16 27 Si 0.95 47.17 27.74 68.60 1.90 49.07 16 28 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 29 H -0.30 -14.96 7.11 99.48 0.71 -14.25 16 30 H -0.26 -11.74 6.52 99.48 0.65 -11.09 16 31 H 0.06 1.44 6.67 -2.39 -0.02 1.42 16 32 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 33 H 0.03 0.74 7.61 -2.39 -0.02 0.72 16 34 H 0.11 1.29 8.13 -2.39 -0.02 1.27 16 35 H 0.10 1.48 5.84 -2.39 -0.01 1.47 16 36 H 0.18 2.72 6.44 -2.91 -0.02 2.70 16 37 H 0.21 0.67 8.06 -2.91 -0.02 0.64 16 38 H 0.18 0.19 8.06 -2.91 -0.02 0.17 16 39 H 0.16 0.85 8.06 -2.91 -0.02 0.83 16 40 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 41 H 0.10 3.61 6.28 -2.91 -0.02 3.59 16 42 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 43 H 0.04 1.80 7.52 -2.39 -0.02 1.79 16 44 H 0.01 0.52 6.85 -2.39 -0.02 0.50 16 45 H 0.04 1.40 7.55 -2.39 -0.02 1.38 16 46 H 0.37 16.71 5.37 -92.71 -0.50 16.21 16 47 H 0.26 16.21 8.31 -92.71 -0.77 15.44 16 Total: -1.00 -86.22 375.32 2.28 -83.94 By element: Atomic # 1 Polarization: 23.84 SS G_CDS: 0.44 Total: 24.28 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: 6.03 Total: 0.42 kcal Atomic # 7 Polarization: -127.22 SS G_CDS: -6.03 Total: -133.26 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.06 Total: -24.46 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 1.90 Total: 49.07 kcal Total: -86.22 2.28 -83.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754828107.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.604 kcal (2) G-P(sol) polarization free energy of solvation -86.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds