Wall clock time and date at job start Tue Mar 31 2020 23:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47429 * 2 1 4 4 C 1.52994 * 109.47224 * 120.00278 * 2 1 3 5 5 N 1.46505 * 109.47564 * 174.99909 * 4 2 1 6 6 C 1.34771 * 120.00316 * 179.97438 * 5 4 2 7 7 O 1.21576 * 119.99876 * 359.97438 * 6 5 4 8 8 C 1.47690 * 120.00203 * 179.97438 * 6 5 4 9 9 C 1.39466 * 120.20370 * 324.77371 * 8 6 5 10 10 C 1.37983 * 119.96807 * 180.02562 * 9 8 6 11 11 C 1.38489 * 120.39558 * 0.02562 * 10 9 8 12 12 C 1.38074 * 120.42205 * 359.97438 * 11 10 9 13 13 C 1.39172 * 120.02001 * 0.02562 * 12 11 10 14 14 C 1.48231 * 120.19557 * 179.97438 * 13 12 11 15 15 C 1.39827 * 120.91042 * 123.12371 * 14 13 12 16 16 C 1.37994 * 119.01156 * 179.79566 * 15 14 13 17 17 N 1.31909 * 120.88374 * 0.49167 * 16 15 14 18 18 C 1.31899 * 122.03148 * 359.73809 * 17 16 15 19 19 C 1.37999 * 120.88882 * 0.02562 * 18 17 16 20 20 N 1.46506 * 109.46850 * 240.00083 * 2 1 3 21 21 C 1.46497 * 119.99780 * 299.99816 * 20 2 1 22 22 C 1.36939 * 120.00012 * 120.00574 * 20 2 1 23 23 H 1.07998 * 120.00040 * 7.44077 * 22 20 2 24 24 C 1.38807 * 119.99947 * 187.44771 * 22 20 2 25 25 N 1.31629 * 119.99935 * 24.93262 * 24 22 20 26 26 Si 1.86801 * 120.00121 * 204.93401 * 24 22 20 27 27 H 1.48495 * 109.47115 * 94.99568 * 26 24 22 28 28 H 1.48498 * 109.47141 * 214.99637 * 26 24 22 29 29 H 1.48500 * 109.46870 * 334.99842 * 26 24 22 30 30 H 1.09000 * 109.47429 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47026 * 300.00112 * 1 2 3 32 32 H 1.08999 * 109.47048 * 59.99645 * 1 2 3 33 33 H 1.08999 * 109.47448 * 54.99597 * 4 2 1 34 34 H 1.09003 * 109.47130 * 294.99770 * 4 2 1 35 35 H 0.97001 * 119.99266 * 0.02562 * 5 4 2 36 36 H 1.07994 * 120.01948 * 359.97438 * 9 8 6 37 37 H 1.07999 * 119.80246 * 179.71744 * 10 9 8 38 38 H 1.08001 * 119.78634 * 179.97438 * 11 10 9 39 39 H 1.08007 * 119.98812 * 179.97438 * 12 11 10 40 40 H 1.08006 * 120.49030 * 0.02562 * 15 14 13 41 41 H 1.07994 * 119.55411 * 180.21032 * 16 15 14 42 42 H 1.08004 * 119.56142 * 180.02562 * 18 17 16 43 43 H 1.07998 * 120.49592 * 179.97438 * 19 18 17 44 44 H 1.09000 * 109.47188 * 95.09220 * 21 20 2 45 45 H 1.08996 * 109.47046 * 215.09303 * 21 20 2 46 46 H 1.08998 * 109.47533 * 335.09235 * 21 20 2 47 47 H 0.97004 * 119.99503 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8265 1.1905 6 6 4.1731 -1.4284 2.1911 7 8 3.5686 -1.8837 3.1426 8 6 5.6449 -1.5349 2.1317 9 6 6.2856 -1.7288 0.9081 10 6 7.6609 -1.8282 0.8584 11 6 8.4125 -1.7371 2.0180 12 6 7.7951 -1.5452 3.2380 13 6 6.4089 -1.4425 3.3084 14 6 5.7420 -1.2371 4.6162 15 6 4.9025 -0.1394 4.8298 16 6 4.2983 0.0114 6.0612 17 7 4.5118 -0.8569 7.0310 18 6 5.2996 -1.9028 6.8727 19 6 5.9398 -2.1323 5.6719 20 7 2.0183 -0.6906 -1.1962 21 6 1.6643 -2.0932 -1.4280 22 6 2.8056 -0.0252 -2.0976 23 1 3.1659 0.9673 -1.8705 24 6 3.1405 -0.6262 -3.3032 25 7 2.3646 -1.5606 -3.8107 26 14 4.6922 -0.1089 -4.2054 27 1 5.8030 -1.0266 -3.8460 28 1 4.4560 -0.1677 -5.6703 29 1 5.0513 1.2787 -3.8172 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.6053 -1.7198 1.2951 34 1 1.7517 -0.1584 2.1369 35 1 3.9824 -0.4622 0.4319 36 1 5.7055 -1.8020 0.0002 37 1 8.1539 -1.9829 -0.0900 38 1 9.4884 -1.8166 1.9677 39 1 8.3880 -1.4755 4.1381 40 1 4.7267 0.5776 4.0414 41 1 3.6456 0.8541 6.2346 42 1 5.4458 -2.5889 7.6939 43 1 6.5838 -2.9905 5.5494 44 1 0.7886 -2.1448 -2.0749 45 1 2.4998 -2.6045 -1.9061 46 1 1.4412 -2.5739 -0.4755 47 1 2.5989 -1.9808 -4.6530 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755305727.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:05 Heat of formation + Delta-G solvation = 53.913810 kcal Electronic energy + Delta-G solvation = -29528.383207 eV Core-core repulsion = 25676.953314 eV Total energy + Delta-G solvation = -3851.429893 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -40.61755 -39.41849 -38.24660 -36.73331 -34.03142 -33.44373 -32.28245 -31.32924 -30.98063 -29.84850 -29.33002 -26.12338 -26.07622 -24.16733 -23.77215 -23.18341 -22.83251 -21.44414 -20.08189 -19.40443 -17.82893 -17.04143 -16.91408 -16.28360 -15.85875 -15.77430 -15.39563 -15.29543 -14.88357 -14.64342 -14.33989 -13.90296 -13.73173 -13.63383 -13.50207 -13.31153 -12.93672 -12.79494 -12.65637 -12.31035 -12.04133 -11.87662 -11.68197 -11.57345 -11.33745 -11.16624 -10.92405 -10.81913 -10.45447 -10.35146 -10.08785 -9.93185 -9.84443 -9.51833 -9.43611 -9.13012 -9.08541 -8.72024 -8.56446 -8.52755 -7.03176 -5.87180 -3.16982 0.68281 1.03223 1.19194 1.53068 2.98858 3.29237 3.37393 3.39969 3.53863 3.69830 3.88041 4.30696 4.39568 4.46363 4.73273 4.83215 4.90194 4.95793 5.06489 5.16613 5.23420 5.26706 5.33390 5.34421 5.51314 5.54000 5.61551 5.76067 5.78430 5.84965 5.99153 6.03095 6.09385 6.11905 6.21289 6.24542 6.32581 6.35753 6.37179 6.67463 6.69556 6.72510 6.76818 6.80607 6.96490 7.37527 7.58566 7.74434 7.96557 7.98876 8.22135 8.56405 9.10541 9.77365 10.23141 11.19653 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012189 B = 0.003816 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.636449 B = 7336.294987 C = 9071.737371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.159 3.841 3 H 0.068 0.932 4 C 0.108 3.892 5 N -0.697 5.697 6 C 0.547 3.453 7 O -0.540 6.540 8 C -0.108 4.108 9 C -0.082 4.082 10 C -0.117 4.117 11 C -0.101 4.101 12 C -0.112 4.112 13 C -0.013 4.013 14 C 0.016 3.984 15 C -0.138 4.138 16 C 0.102 3.898 17 N -0.489 5.489 18 C 0.097 3.903 19 C -0.158 4.158 20 N -0.597 5.597 21 C 0.163 3.837 22 C -0.263 4.263 23 H 0.075 0.925 24 C 0.004 3.996 25 N -0.896 5.896 26 Si 0.891 3.109 27 H -0.288 1.288 28 H -0.293 1.293 29 H -0.279 1.279 30 H 0.050 0.950 31 H 0.043 0.957 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.411 0.589 36 H 0.140 0.860 37 H 0.131 0.869 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.127 0.873 41 H 0.153 0.847 42 H 0.153 0.847 43 H 0.132 0.868 44 H 0.020 0.980 45 H 0.053 0.947 46 H -0.001 1.001 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.827 0.796 14.448 17.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.050 3.950 3 H 0.087 0.913 4 C -0.018 4.018 5 N -0.348 5.348 6 C 0.333 3.667 7 O -0.419 6.419 8 C -0.111 4.111 9 C -0.101 4.101 10 C -0.135 4.135 11 C -0.120 4.120 12 C -0.130 4.130 13 C -0.014 4.014 14 C 0.008 3.992 15 C -0.158 4.158 16 C -0.055 4.055 17 N -0.198 5.198 18 C -0.060 4.060 19 C -0.177 4.177 20 N -0.320 5.320 21 C 0.018 3.982 22 C -0.392 4.392 23 H 0.093 0.907 24 C -0.194 4.194 25 N -0.541 5.541 26 Si 0.721 3.279 27 H -0.215 1.215 28 H -0.220 1.220 29 H -0.205 1.205 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.248 0.752 36 H 0.158 0.842 37 H 0.149 0.851 38 H 0.146 0.854 39 H 0.146 0.854 40 H 0.145 0.855 41 H 0.171 0.829 42 H 0.171 0.829 43 H 0.150 0.850 44 H 0.038 0.962 45 H 0.072 0.928 46 H 0.018 0.982 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.951 0.520 15.732 18.107 hybrid contribution 1.313 0.114 -2.127 2.502 sum 10.264 0.634 13.605 17.054 Atomic orbital electron populations 1.22203 0.97427 1.01462 1.00667 1.20570 0.92639 0.95514 0.86243 0.91331 1.21969 0.79303 1.01361 0.99170 1.45865 1.08390 1.57784 1.22765 1.18174 0.86595 0.78979 0.82973 1.90789 1.69515 1.48204 1.33343 1.20111 0.93631 1.04066 0.93313 1.21523 0.95125 0.96397 0.97026 1.21247 0.93726 0.99688 0.98848 1.21238 1.00153 0.98329 0.92229 1.21104 0.92751 1.00794 0.98374 1.18635 0.92836 0.99047 0.90897 1.18910 0.94373 0.93919 0.91994 1.22073 0.96935 0.98123 0.98699 1.22544 0.96789 0.97309 0.88815 1.67565 1.15210 1.03424 1.33611 1.22567 0.92645 0.94565 0.96241 1.22091 1.01993 0.99905 0.93751 1.44136 1.58454 1.08493 1.20901 1.20808 0.99853 0.83466 0.94059 1.19278 1.22369 1.00506 0.97032 0.90694 1.24724 0.99052 0.99266 0.96398 1.70231 1.35045 1.29838 1.18968 0.86435 0.84405 0.78075 0.79024 1.21510 1.21976 1.20456 0.93101 0.93801 0.92240 0.92016 0.92372 0.75168 0.84194 0.85137 0.85397 0.85365 0.85474 0.82949 0.82943 0.85016 0.96214 0.92829 0.98236 0.93717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 9.19 37.16 0.34 -2.33 16 2 C 0.16 2.93 2.87 -67.93 -0.19 2.73 16 3 H 0.07 1.24 7.78 -51.93 -0.40 0.84 16 4 C 0.11 1.85 4.93 -4.04 -0.02 1.83 16 5 N -0.70 -11.82 5.30 -61.30 -0.32 -12.14 16 6 C 0.55 9.35 6.47 -12.40 -0.08 9.27 16 7 O -0.54 -10.57 14.45 5.30 0.08 -10.50 16 8 C -0.11 -1.60 5.80 -104.69 -0.61 -2.21 16 9 C -0.08 -1.12 9.32 -39.22 -0.37 -1.49 16 10 C -0.12 -1.32 10.02 -39.58 -0.40 -1.72 16 11 C -0.10 -0.99 10.03 -39.55 -0.40 -1.39 16 12 C -0.11 -1.19 9.64 -39.29 -0.38 -1.57 16 13 C -0.01 -0.18 5.47 -104.55 -0.57 -0.75 16 14 C 0.02 0.22 4.11 -104.60 -0.43 -0.21 16 15 C -0.14 -1.89 7.88 -39.08 -0.31 -2.19 16 16 C 0.10 1.33 11.17 -17.61 -0.20 1.14 16 17 N -0.49 -6.74 10.34 -13.34 -0.14 -6.88 16 18 C 0.10 1.17 11.17 -17.61 -0.20 0.97 16 19 C -0.16 -1.91 9.76 -39.08 -0.38 -2.30 16 20 N -0.60 -13.34 2.30 -173.49 -0.40 -13.74 16 21 C 0.16 3.79 8.07 59.85 0.48 4.28 16 22 C -0.26 -6.47 9.42 -15.06 -0.14 -6.62 16 23 H 0.08 1.79 7.78 -52.49 -0.41 1.38 16 24 C 0.00 0.11 4.93 -17.43 -0.09 0.03 16 25 N -0.90 -24.66 10.61 55.49 0.59 -24.07 16 26 Si 0.89 20.14 29.62 -169.99 -5.04 15.11 16 27 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 28 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 29 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 30 H 0.05 0.88 7.67 -51.93 -0.40 0.48 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.06 1.16 6.86 -51.93 -0.36 0.80 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.41 7.08 7.06 -40.82 -0.29 6.79 16 36 H 0.14 2.03 7.60 -52.49 -0.40 1.63 16 37 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 38 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.13 1.08 8.06 -52.48 -0.42 0.65 16 40 H 0.13 1.67 7.87 -52.48 -0.41 1.25 16 41 H 0.15 1.61 8.06 -52.49 -0.42 1.19 16 42 H 0.15 1.36 8.06 -52.48 -0.42 0.94 16 43 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 44 H 0.02 0.50 7.75 -51.93 -0.40 0.10 16 45 H 0.05 1.36 6.60 -51.93 -0.34 1.02 16 46 H 0.00 -0.02 6.53 -51.93 -0.34 -0.36 16 47 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 388.78 15.07 5.86 5.86 Total: -1.00 -30.47 388.78 -9.99 -40.46 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -6.69 Total: 8.44 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -3.93 Total: -2.53 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: -0.27 Total: -56.84 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.08 Total: -10.50 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.04 Total: 15.11 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.47 -9.99 -40.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755305727.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.371 kcal (2) G-P(sol) polarization free energy of solvation -30.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds