Wall clock time and date at job start Tue Mar 31 2020 23:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47429 * 2 1 4 4 C 1.52994 * 109.47224 * 120.00278 * 2 1 3 5 5 N 1.46505 * 109.47564 * 174.99909 * 4 2 1 6 6 C 1.34771 * 120.00316 * 179.97438 * 5 4 2 7 7 O 1.21576 * 119.99876 * 359.97438 * 6 5 4 8 8 C 1.47690 * 120.00203 * 179.97438 * 6 5 4 9 9 C 1.39466 * 120.20370 * 324.77371 * 8 6 5 10 10 C 1.37983 * 119.96807 * 180.02562 * 9 8 6 11 11 C 1.38489 * 120.39558 * 0.02562 * 10 9 8 12 12 C 1.38074 * 120.42205 * 359.97438 * 11 10 9 13 13 C 1.39172 * 120.02001 * 0.02562 * 12 11 10 14 14 C 1.48231 * 120.19557 * 179.97438 * 13 12 11 15 15 C 1.39827 * 120.91042 * 123.12371 * 14 13 12 16 16 C 1.37994 * 119.01156 * 179.79566 * 15 14 13 17 17 N 1.31909 * 120.88374 * 0.49167 * 16 15 14 18 18 C 1.31899 * 122.03148 * 359.73809 * 17 16 15 19 19 C 1.37999 * 120.88882 * 0.02562 * 18 17 16 20 20 N 1.46506 * 109.46850 * 240.00083 * 2 1 3 21 21 C 1.46497 * 119.99780 * 299.99816 * 20 2 1 22 22 C 1.36939 * 120.00012 * 120.00574 * 20 2 1 23 23 H 1.07998 * 120.00040 * 7.44077 * 22 20 2 24 24 C 1.38807 * 119.99947 * 187.44771 * 22 20 2 25 25 N 1.31629 * 119.99935 * 24.93262 * 24 22 20 26 26 Si 1.86801 * 120.00121 * 204.93401 * 24 22 20 27 27 H 1.48495 * 109.47115 * 94.99568 * 26 24 22 28 28 H 1.48498 * 109.47141 * 214.99637 * 26 24 22 29 29 H 1.48500 * 109.46870 * 334.99842 * 26 24 22 30 30 H 1.09000 * 109.47429 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47026 * 300.00112 * 1 2 3 32 32 H 1.08999 * 109.47048 * 59.99645 * 1 2 3 33 33 H 1.08999 * 109.47448 * 54.99597 * 4 2 1 34 34 H 1.09003 * 109.47130 * 294.99770 * 4 2 1 35 35 H 0.97001 * 119.99266 * 0.02562 * 5 4 2 36 36 H 1.07994 * 120.01948 * 359.97438 * 9 8 6 37 37 H 1.07999 * 119.80246 * 179.71744 * 10 9 8 38 38 H 1.08001 * 119.78634 * 179.97438 * 11 10 9 39 39 H 1.08007 * 119.98812 * 179.97438 * 12 11 10 40 40 H 1.08006 * 120.49030 * 0.02562 * 15 14 13 41 41 H 1.07994 * 119.55411 * 180.21032 * 16 15 14 42 42 H 1.08004 * 119.56142 * 180.02562 * 18 17 16 43 43 H 1.07998 * 120.49592 * 179.97438 * 19 18 17 44 44 H 1.09000 * 109.47188 * 95.09220 * 21 20 2 45 45 H 1.08996 * 109.47046 * 215.09303 * 21 20 2 46 46 H 1.08998 * 109.47533 * 335.09235 * 21 20 2 47 47 H 0.97004 * 119.99503 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8265 1.1905 6 6 4.1731 -1.4284 2.1911 7 8 3.5686 -1.8837 3.1426 8 6 5.6449 -1.5349 2.1317 9 6 6.2856 -1.7288 0.9081 10 6 7.6609 -1.8282 0.8584 11 6 8.4125 -1.7371 2.0180 12 6 7.7951 -1.5452 3.2380 13 6 6.4089 -1.4425 3.3084 14 6 5.7420 -1.2371 4.6162 15 6 4.9025 -0.1394 4.8298 16 6 4.2983 0.0114 6.0612 17 7 4.5118 -0.8569 7.0310 18 6 5.2996 -1.9028 6.8727 19 6 5.9398 -2.1323 5.6719 20 7 2.0183 -0.6906 -1.1962 21 6 1.6643 -2.0932 -1.4280 22 6 2.8056 -0.0252 -2.0976 23 1 3.1659 0.9673 -1.8705 24 6 3.1405 -0.6262 -3.3032 25 7 2.3646 -1.5606 -3.8107 26 14 4.6922 -0.1089 -4.2054 27 1 5.8030 -1.0266 -3.8460 28 1 4.4560 -0.1677 -5.6703 29 1 5.0513 1.2787 -3.8172 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.6053 -1.7198 1.2951 34 1 1.7517 -0.1584 2.1369 35 1 3.9824 -0.4622 0.4319 36 1 5.7055 -1.8020 0.0002 37 1 8.1539 -1.9829 -0.0900 38 1 9.4884 -1.8166 1.9677 39 1 8.3880 -1.4755 4.1381 40 1 4.7267 0.5776 4.0414 41 1 3.6456 0.8541 6.2346 42 1 5.4458 -2.5889 7.6939 43 1 6.5838 -2.9905 5.5494 44 1 0.7886 -2.1448 -2.0749 45 1 2.4998 -2.6045 -1.9061 46 1 1.4412 -2.5739 -0.4755 47 1 2.5989 -1.9808 -4.6530 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755305727.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:03 Heat of formation + Delta-G solvation = 37.369255 kcal Electronic energy + Delta-G solvation = -29529.100633 eV Core-core repulsion = 25676.953314 eV Total energy + Delta-G solvation = -3852.147319 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.66573 -40.52094 -39.36496 -38.33165 -35.51909 -34.52058 -33.84238 -32.36436 -32.00591 -31.05914 -30.75944 -28.06407 -27.38948 -25.27318 -24.89264 -24.66787 -23.91196 -22.41371 -21.33865 -20.93229 -18.99325 -18.81204 -17.96937 -17.31616 -17.21955 -17.00382 -16.71597 -16.29531 -16.13793 -15.87753 -15.69333 -15.30337 -14.87980 -14.70408 -14.61600 -14.52206 -14.38115 -14.21949 -13.90095 -13.71816 -13.48692 -13.14025 -12.94603 -12.77723 -12.66724 -12.59671 -12.53737 -12.27813 -12.22407 -12.08115 -11.73557 -11.55782 -11.21284 -10.63286 -10.51375 -10.45882 -10.13968 -10.03334 -9.86862 -9.66012 -8.94155 -7.83915 -5.14195 -0.28817 0.09588 0.25153 0.58115 1.49585 1.52592 1.60219 1.80146 2.27191 2.54277 2.70441 2.91725 3.29659 3.37780 3.59991 3.60355 3.74364 3.86503 4.00215 4.02571 4.08863 4.16983 4.24471 4.31430 4.39964 4.42655 4.55937 4.62334 4.66687 4.69874 4.72186 4.86528 4.87144 4.92191 5.01200 5.08187 5.17606 5.20552 5.32197 5.36386 5.39606 5.41640 5.44505 5.57187 5.62499 5.75349 5.77816 5.86024 6.28454 6.60610 7.04070 7.14415 7.22745 7.89353 8.32062 9.22752 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012189 B = 0.003816 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.636449 B = 7336.294987 C = 9071.737371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.158 3.842 3 H 0.076 0.924 4 C 0.119 3.881 5 N -0.699 5.699 6 C 0.549 3.451 7 O -0.570 6.570 8 C -0.132 4.132 9 C -0.096 4.096 10 C -0.119 4.119 11 C -0.085 4.085 12 C -0.106 4.106 13 C -0.022 4.022 14 C 0.003 3.997 15 C -0.153 4.153 16 C 0.091 3.909 17 N -0.510 5.510 18 C 0.092 3.908 19 C -0.161 4.161 20 N -0.604 5.604 21 C 0.184 3.816 22 C -0.256 4.256 23 H 0.084 0.916 24 C -0.050 4.050 25 N -0.934 5.934 26 Si 0.952 3.048 27 H -0.284 1.284 28 H -0.307 1.307 29 H -0.266 1.266 30 H 0.042 0.958 31 H 0.077 0.923 32 H 0.044 0.956 33 H 0.045 0.955 34 H 0.074 0.926 35 H 0.410 0.590 36 H 0.122 0.878 37 H 0.150 0.850 38 H 0.167 0.833 39 H 0.156 0.844 40 H 0.123 0.877 41 H 0.169 0.831 42 H 0.183 0.817 43 H 0.155 0.845 44 H -0.008 1.008 45 H 0.027 0.973 46 H 0.016 0.984 47 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.320 1.322 15.999 20.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.051 3.949 3 H 0.094 0.906 4 C -0.007 4.007 5 N -0.349 5.349 6 C 0.336 3.664 7 O -0.451 6.451 8 C -0.135 4.135 9 C -0.115 4.115 10 C -0.137 4.137 11 C -0.103 4.103 12 C -0.124 4.124 13 C -0.023 4.023 14 C -0.006 4.006 15 C -0.173 4.173 16 C -0.064 4.064 17 N -0.220 5.220 18 C -0.065 4.065 19 C -0.180 4.180 20 N -0.327 5.327 21 C 0.039 3.961 22 C -0.386 4.386 23 H 0.102 0.898 24 C -0.245 4.245 25 N -0.581 5.581 26 Si 0.781 3.219 27 H -0.210 1.210 28 H -0.235 1.235 29 H -0.191 1.191 30 H 0.062 0.938 31 H 0.096 0.904 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.092 0.908 35 H 0.247 0.753 36 H 0.140 0.860 37 H 0.168 0.832 38 H 0.185 0.815 39 H 0.174 0.826 40 H 0.141 0.859 41 H 0.187 0.813 42 H 0.200 0.800 43 H 0.173 0.827 44 H 0.010 0.990 45 H 0.045 0.955 46 H 0.034 0.966 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 11.449 1.081 17.312 20.784 hybrid contribution 0.559 -0.035 -2.529 2.591 sum 12.008 1.046 14.783 19.074 Atomic orbital electron populations 1.22094 0.95994 1.01287 1.01588 1.20752 0.93643 0.95542 0.84972 0.90585 1.21781 0.79607 1.00353 0.98931 1.45874 1.08201 1.57937 1.22850 1.18546 0.87726 0.77944 0.82160 1.90757 1.70456 1.49470 1.34369 1.19975 0.92200 1.06786 0.94581 1.21454 0.96365 0.97725 0.95932 1.21521 0.92655 0.98936 1.00541 1.21671 1.01940 0.95651 0.91031 1.21455 0.91671 0.99307 0.99939 1.18793 0.94003 0.99434 0.90117 1.19139 0.94586 0.94211 0.92621 1.22137 0.97696 0.98619 0.98873 1.22846 0.97013 0.97882 0.88702 1.67613 1.16116 1.04238 1.34004 1.23108 0.91764 0.94399 0.97206 1.22378 1.02147 1.00176 0.93315 1.44269 1.58608 1.08239 1.21621 1.20433 0.97481 0.84265 0.93901 1.19613 1.21559 1.00601 0.96796 0.89829 1.25404 1.01405 0.99991 0.97656 1.70379 1.36633 1.31787 1.19326 0.85466 0.81244 0.78349 0.76826 1.21046 1.23520 1.19054 0.93848 0.90422 0.93702 0.93678 0.90804 0.75349 0.86013 0.83248 0.81522 0.82635 0.85922 0.81343 0.80020 0.82743 0.98967 0.95463 0.96565 0.94558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.95 9.19 71.98 0.66 -4.29 16 2 C 0.16 5.73 2.87 44.99 0.13 5.86 16 3 H 0.08 2.66 7.78 -2.39 -0.02 2.64 16 4 C 0.12 4.06 4.93 86.38 0.43 4.48 16 5 N -0.70 -23.87 5.30 -466.12 -2.47 -26.34 16 6 C 0.55 18.96 6.47 86.74 0.56 19.52 16 7 O -0.57 -22.57 14.45 -3.95 -0.06 -22.63 16 8 C -0.13 -3.89 5.80 -19.91 -0.12 -4.00 16 9 C -0.10 -2.58 9.32 22.51 0.21 -2.37 16 10 C -0.12 -2.38 10.02 22.27 0.22 -2.16 16 11 C -0.09 -1.33 10.03 22.29 0.22 -1.11 16 12 C -0.11 -1.90 9.64 22.46 0.22 -1.69 16 13 C -0.02 -0.57 5.47 -19.82 -0.11 -0.67 16 14 C 0.00 0.07 4.11 -19.85 -0.08 -0.01 16 15 C -0.15 -4.14 7.88 22.60 0.18 -3.96 16 16 C 0.09 2.35 11.17 84.62 0.95 3.30 16 17 N -0.51 -13.57 10.34 -196.12 -2.03 -15.60 16 18 C 0.09 2.06 11.17 84.63 0.95 3.00 16 19 C -0.16 -3.61 9.76 22.60 0.22 -3.39 16 20 N -0.60 -27.27 2.30 -702.80 -1.61 -28.88 16 21 C 0.18 8.86 8.07 127.77 1.03 9.89 16 22 C -0.26 -12.62 9.42 84.03 0.79 -11.83 16 23 H 0.08 3.92 7.78 -2.91 -0.02 3.90 16 24 C -0.05 -2.58 4.93 84.86 0.42 -2.16 16 25 N -0.93 -52.95 10.61 21.65 0.23 -52.72 16 26 Si 0.95 41.76 29.62 68.60 2.03 43.79 16 27 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 28 H -0.31 -14.14 7.11 99.48 0.71 -13.44 16 29 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 30 H 0.04 1.48 7.67 -2.39 -0.02 1.46 16 31 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 32 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.04 1.69 6.86 -2.39 -0.02 1.68 16 34 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.41 14.26 7.06 -92.71 -0.65 13.60 16 36 H 0.12 3.63 7.60 -2.91 -0.02 3.61 16 37 H 0.15 2.39 8.06 -2.91 -0.02 2.36 16 38 H 0.17 1.36 8.06 -2.91 -0.02 1.34 16 39 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 40 H 0.12 3.28 7.87 -2.91 -0.02 3.25 16 41 H 0.17 3.51 8.06 -2.91 -0.02 3.49 16 42 H 0.18 2.78 8.06 -2.91 -0.02 2.75 16 43 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 44 H -0.01 -0.43 7.75 -2.39 -0.02 -0.44 16 45 H 0.03 1.43 6.60 -2.39 -0.02 1.41 16 46 H 0.02 0.70 6.53 -2.39 -0.02 0.68 16 47 H 0.25 13.69 8.31 -92.71 -0.77 12.92 16 Total: -1.00 -67.30 388.78 3.30 -64.00 By element: Atomic # 1 Polarization: 29.63 SS G_CDS: 0.33 Total: 29.95 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: 6.88 Total: 8.42 kcal Atomic # 7 Polarization: -117.66 SS G_CDS: -5.88 Total: -123.54 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -0.06 Total: -22.63 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Total: -67.30 3.30 -64.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755305727.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.374 kcal (2) G-P(sol) polarization free energy of solvation -67.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds