Wall clock time and date at job start Tue Mar 31 2020 23:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47045 * 2 1 4 4 C 1.53001 * 109.47104 * 239.99711 * 2 1 3 5 5 N 1.46499 * 109.46827 * 184.99986 * 4 2 1 6 6 C 1.34778 * 119.99852 * 180.02562 * 5 4 2 7 7 O 1.21574 * 120.00018 * 359.97438 * 6 5 4 8 8 C 1.47695 * 120.00372 * 180.02562 * 6 5 4 9 9 C 1.39470 * 120.20245 * 334.30081 * 8 6 5 10 10 C 1.37974 * 119.97094 * 180.02562 * 9 8 6 11 11 C 1.38485 * 120.39556 * 359.97438 * 10 9 8 12 12 C 1.38071 * 120.42466 * 0.02562 * 11 10 9 13 13 C 1.39177 * 120.01693 * 359.97438 * 12 11 10 14 14 C 1.48224 * 120.19855 * 179.97438 * 13 12 11 15 15 C 1.39833 * 120.91462 * 122.39665 * 14 13 12 16 16 C 1.37990 * 119.01025 * 179.79852 * 15 14 13 17 17 N 1.31910 * 120.89334 * 0.48914 * 16 15 14 18 18 C 1.31910 * 122.02275 * 359.73880 * 17 16 15 19 19 C 1.37997 * 120.88889 * 0.02562 * 18 17 16 20 20 N 1.46498 * 109.47079 * 119.99873 * 2 1 3 21 21 C 1.46507 * 120.00230 * 59.99895 * 20 2 1 22 22 C 1.36935 * 119.99983 * 239.99984 * 20 2 1 23 23 H 1.07997 * 120.00053 * 22.40934 * 22 20 2 24 24 C 1.38817 * 120.00340 * 202.40398 * 22 20 2 25 25 N 1.31622 * 119.99663 * 9.40647 * 24 22 20 26 26 Si 1.86794 * 120.00453 * 189.40759 * 24 22 20 27 27 H 1.48493 * 109.47378 * 89.99827 * 26 24 22 28 28 H 1.48497 * 109.47241 * 210.00428 * 26 24 22 29 29 H 1.48508 * 109.47073 * 329.99876 * 26 24 22 30 30 H 1.08999 * 109.47277 * 299.99735 * 1 2 3 31 31 H 1.09000 * 109.47093 * 60.00650 * 1 2 3 32 32 H 1.09005 * 109.46919 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46906 * 65.00419 * 4 2 1 34 34 H 1.09001 * 109.47204 * 304.99887 * 4 2 1 35 35 H 0.97002 * 120.00601 * 0.02562 * 5 4 2 36 36 H 1.08007 * 120.01455 * 359.97438 * 9 8 6 37 37 H 1.07996 * 119.80610 * 179.71988 * 10 9 8 38 38 H 1.08008 * 119.78877 * 179.97438 * 11 10 9 39 39 H 1.07998 * 119.99672 * 179.97438 * 12 11 10 40 40 H 1.07999 * 120.49240 * 359.97438 * 15 14 13 41 41 H 1.08000 * 119.55384 * 180.20437 * 16 15 14 42 42 H 1.07997 * 119.55963 * 180.02562 * 18 17 16 43 43 H 1.08002 * 120.49460 * 179.97438 * 19 18 17 44 44 H 1.09004 * 109.46691 * 96.05055 * 21 20 2 45 45 H 1.08993 * 109.47258 * 216.04839 * 21 20 2 46 46 H 1.08994 * 109.46710 * 336.05342 * 21 20 2 47 47 H 0.96996 * 120.00115 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1905 6 6 4.1731 -1.4283 -2.1911 7 8 3.5686 -1.8845 -3.1421 8 6 5.6450 -1.5349 -2.1317 9 6 6.3861 -0.6118 -1.3941 10 6 7.7609 -0.7155 -1.3423 11 6 8.4128 -1.7328 -2.0190 12 6 7.6954 -2.6554 -2.7542 13 6 6.3079 -2.5673 -2.8183 14 6 5.5337 -3.5552 -3.6068 15 6 4.5369 -4.3309 -3.0067 16 6 3.8375 -5.2358 -3.7787 17 7 4.1052 -5.3804 -5.0623 18 6 5.0401 -4.6721 -5.6659 19 6 5.7840 -3.7414 -4.9698 20 7 2.0183 -0.6906 1.1962 21 6 1.6644 -2.0932 1.4281 22 6 2.8056 -0.0251 2.0975 23 1 2.7791 1.0536 2.1446 24 6 3.6376 -0.7368 2.9509 25 7 3.8115 -2.0294 2.7737 26 14 4.5104 0.1398 4.3505 27 1 3.6542 0.1104 5.5635 28 1 5.7975 -0.5433 4.6364 29 1 4.7733 1.5495 3.9644 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.7517 -0.1584 -2.1369 34 1 1.6054 -1.7199 -1.2951 35 1 3.9824 -0.4628 -0.4315 36 1 5.8840 0.1842 -0.8643 37 1 8.3325 0.0033 -0.7741 38 1 9.4895 -1.8045 -1.9721 39 1 8.2109 -3.4457 -3.2795 40 1 4.3159 -4.2213 -1.9552 41 1 3.0635 -5.8370 -3.3250 42 1 5.2258 -4.8227 -6.7191 43 1 6.5482 -3.1653 -5.4704 44 1 2.4679 -2.7351 1.0669 45 1 1.5185 -2.2594 2.4954 46 1 0.7436 -2.3285 0.8945 47 1 4.3932 -2.5267 3.3696 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755305728.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:07 Heat of formation + Delta-G solvation = 36.701771 kcal Electronic energy + Delta-G solvation = -29825.759428 eV Core-core repulsion = 25973.583164 eV Total energy + Delta-G solvation = -3852.176263 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.65385 -40.49629 -39.32823 -38.28648 -35.48418 -34.48737 -33.82623 -32.35037 -32.00266 -31.00623 -30.75031 -28.01618 -27.35642 -25.25999 -24.85150 -24.65378 -23.92537 -22.39115 -21.30395 -20.91090 -18.98035 -18.80693 -17.94896 -17.34075 -17.07844 -17.01277 -16.75102 -16.25254 -16.13033 -15.79615 -15.69266 -15.41055 -14.83168 -14.66832 -14.61859 -14.49917 -14.28191 -14.20283 -13.94157 -13.66134 -13.50435 -13.17470 -12.82795 -12.75592 -12.63770 -12.60208 -12.48762 -12.28599 -12.20454 -12.08705 -11.74063 -11.49902 -11.24453 -10.61492 -10.54866 -10.45470 -10.15570 -10.00284 -9.80169 -9.63418 -8.77277 -7.75356 -5.25492 -0.29026 0.11291 0.25429 0.59159 1.48749 1.52402 1.58638 1.85034 2.33262 2.53374 2.76676 2.93136 3.38281 3.39528 3.58462 3.63685 3.76424 3.85139 3.99346 4.05814 4.08918 4.17283 4.24711 4.36355 4.41128 4.43811 4.59154 4.63140 4.68174 4.70090 4.80292 4.82751 4.86048 4.90357 5.06893 5.08629 5.18881 5.25316 5.31193 5.32660 5.42589 5.44387 5.45912 5.60704 5.70664 5.76886 5.78090 5.87927 6.36096 6.64668 7.03097 7.19401 7.25948 7.90319 8.36291 9.25522 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010878 B = 0.004175 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2573.295694 B = 6704.467665 C = 8078.151089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.157 3.843 3 H 0.074 0.926 4 C 0.116 3.884 5 N -0.696 5.696 6 C 0.545 3.455 7 O -0.570 6.570 8 C -0.136 4.136 9 C -0.093 4.093 10 C -0.119 4.119 11 C -0.087 4.087 12 C -0.110 4.110 13 C -0.026 4.026 14 C 0.007 3.993 15 C -0.146 4.146 16 C 0.089 3.911 17 N -0.507 5.507 18 C 0.092 3.908 19 C -0.158 4.158 20 N -0.602 5.602 21 C 0.186 3.814 22 C -0.260 4.260 23 H 0.074 0.926 24 C -0.039 4.039 25 N -0.930 5.930 26 Si 0.958 3.042 27 H -0.296 1.296 28 H -0.299 1.299 29 H -0.265 1.265 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.046 0.954 33 H 0.068 0.932 34 H 0.040 0.960 35 H 0.409 0.591 36 H 0.129 0.871 37 H 0.156 0.844 38 H 0.168 0.832 39 H 0.155 0.845 40 H 0.104 0.896 41 H 0.162 0.838 42 H 0.188 0.812 43 H 0.160 0.840 44 H 0.001 0.999 45 H 0.013 0.987 46 H 0.019 0.981 47 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.322 1.271 -12.353 14.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.050 3.950 3 H 0.092 0.908 4 C -0.009 4.009 5 N -0.346 5.346 6 C 0.332 3.668 7 O -0.452 6.452 8 C -0.139 4.139 9 C -0.111 4.111 10 C -0.137 4.137 11 C -0.105 4.105 12 C -0.128 4.128 13 C -0.027 4.027 14 C -0.001 4.001 15 C -0.166 4.166 16 C -0.066 4.066 17 N -0.217 5.217 18 C -0.065 4.065 19 C -0.178 4.178 20 N -0.325 5.325 21 C 0.041 3.959 22 C -0.390 4.390 23 H 0.092 0.908 24 C -0.235 4.235 25 N -0.576 5.576 26 Si 0.788 3.212 27 H -0.224 1.224 28 H -0.226 1.226 29 H -0.190 1.190 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.058 0.942 35 H 0.246 0.754 36 H 0.147 0.853 37 H 0.174 0.826 38 H 0.186 0.814 39 H 0.172 0.828 40 H 0.122 0.878 41 H 0.179 0.821 42 H 0.205 0.795 43 H 0.177 0.823 44 H 0.019 0.981 45 H 0.031 0.969 46 H 0.037 0.963 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 7.457 0.257 -13.375 15.315 hybrid contribution 0.645 0.887 2.264 2.516 sum 8.102 1.144 -11.111 13.798 Atomic orbital electron populations 1.22065 0.95154 1.01586 1.02029 1.20825 0.94210 0.95545 0.84406 0.90754 1.21860 0.79675 1.00091 0.99325 1.45849 1.08322 1.57743 1.22638 1.18567 0.87860 0.77825 0.82502 1.90739 1.70562 1.49288 1.34599 1.20052 0.92462 0.99237 1.02141 1.21476 0.95696 0.98038 0.95918 1.21551 0.93298 0.99503 0.99314 1.21690 1.01973 0.92675 0.94182 1.21449 0.90943 1.00385 0.99988 1.18849 0.94146 0.93483 0.96226 1.19108 0.93865 0.92881 0.94266 1.21989 0.96657 0.97454 1.00510 1.22694 0.97938 0.96255 0.89749 1.67616 1.17253 1.25814 1.11021 1.23163 0.90601 0.91404 1.01320 1.22376 1.02333 1.00244 0.92822 1.44058 1.57864 1.09284 1.21338 1.20393 0.93917 0.84807 0.96817 1.19515 1.15713 0.91354 1.12395 0.90809 1.25610 0.99171 0.96410 1.02314 1.70249 1.40708 1.07598 1.39071 0.85408 0.77381 0.78464 0.79981 1.22382 1.22559 1.18992 0.92660 0.90555 0.93459 0.91385 0.94176 0.75419 0.85347 0.82610 0.81432 0.82771 0.87817 0.82097 0.79532 0.82253 0.98119 0.96852 0.96284 0.94650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.62 9.18 71.98 0.66 -3.96 16 2 C 0.16 5.77 2.86 44.99 0.13 5.90 16 3 H 0.07 2.64 7.86 -2.39 -0.02 2.62 16 4 C 0.12 4.29 4.97 86.38 0.43 4.72 16 5 N -0.70 -26.85 5.30 -466.11 -2.47 -29.33 16 6 C 0.54 21.12 6.89 86.74 0.60 21.72 16 7 O -0.57 -24.40 13.68 -3.95 -0.05 -24.45 16 8 C -0.14 -4.56 5.86 -19.91 -0.12 -4.68 16 9 C -0.09 -2.68 9.36 22.50 0.21 -2.47 16 10 C -0.12 -2.62 10.02 22.27 0.22 -2.40 16 11 C -0.09 -1.63 10.03 22.29 0.22 -1.41 16 12 C -0.11 -2.42 9.65 22.46 0.22 -2.20 16 13 C -0.03 -0.78 5.46 -19.82 -0.11 -0.88 16 14 C 0.01 0.22 4.05 -19.85 -0.08 0.14 16 15 C -0.15 -5.04 7.57 22.60 0.17 -4.87 16 16 C 0.09 2.85 11.17 84.62 0.95 3.80 16 17 N -0.51 -15.55 10.35 -196.12 -2.03 -17.58 16 18 C 0.09 2.32 11.17 84.62 0.95 3.26 16 19 C -0.16 -4.02 9.77 22.60 0.22 -3.80 16 20 N -0.60 -27.29 2.29 -702.78 -1.61 -28.90 16 21 C 0.19 8.93 8.08 127.77 1.03 9.97 16 22 C -0.26 -12.79 9.34 84.04 0.79 -12.01 16 23 H 0.07 3.50 7.80 -2.91 -0.02 3.48 16 24 C -0.04 -2.01 5.18 84.86 0.44 -1.57 16 25 N -0.93 -51.42 10.48 21.65 0.23 -51.19 16 26 Si 0.96 42.04 29.56 68.60 2.03 44.07 16 27 H -0.30 -13.29 7.11 99.48 0.71 -12.59 16 28 H -0.30 -13.39 7.11 99.48 0.71 -12.68 16 29 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 30 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.05 1.51 6.67 -2.38 -0.02 1.49 16 33 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.04 1.62 7.84 -2.39 -0.02 1.60 16 35 H 0.41 16.56 6.56 -92.71 -0.61 15.95 16 36 H 0.13 3.70 7.11 -2.91 -0.02 3.68 16 37 H 0.16 2.54 8.06 -2.91 -0.02 2.52 16 38 H 0.17 1.81 8.06 -2.91 -0.02 1.78 16 39 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 40 H 0.10 3.98 7.92 -2.91 -0.02 3.96 16 41 H 0.16 4.55 8.06 -2.91 -0.02 4.53 16 42 H 0.19 3.17 8.06 -2.91 -0.02 3.15 16 43 H 0.16 2.99 8.06 -2.91 -0.02 2.96 16 44 H 0.00 0.03 7.32 -2.39 -0.02 0.01 16 45 H 0.01 0.68 7.26 -2.39 -0.02 0.66 16 46 H 0.02 0.81 6.44 -2.39 -0.02 0.79 16 47 H 0.24 13.43 8.31 -92.71 -0.77 12.66 16 Total: -1.00 -66.71 387.46 3.39 -63.32 By element: Atomic # 1 Polarization: 34.43 SS G_CDS: 0.37 Total: 34.81 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: 6.93 Total: 9.25 kcal Atomic # 7 Polarization: -121.11 SS G_CDS: -5.88 Total: -126.99 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.05 Total: -24.45 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Total: -66.71 3.39 -63.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755305728.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.021 kcal (2) G-P(sol) polarization free energy of solvation -66.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds