Wall clock time and date at job start Tue Mar 31 2020 22:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34773 * 120.00509 * 2 1 4 4 O 1.21709 * 120.00511 * 186.35502 * 3 2 1 5 5 C 1.46586 * 119.99526 * 6.35216 * 3 2 1 6 6 C 1.38057 * 126.00499 * 187.62861 * 5 3 2 7 7 C 1.39370 * 107.43712 * 179.84599 * 6 5 3 8 8 C 1.37820 * 107.65435 * 0.42034 * 7 6 5 9 9 C 1.47808 * 125.81846 * 179.70470 * 8 7 6 10 10 C 1.39600 * 120.14323 * 179.77029 * 9 8 7 11 11 C 1.37948 * 119.85226 * 179.76662 * 10 9 8 12 12 C 1.38369 * 120.14555 * 0.48143 * 11 10 9 13 13 C 1.38355 * 120.29393 * 359.77007 * 12 11 10 14 14 C 1.37955 * 120.15227 * 0.02562 * 13 12 11 15 15 N 1.36401 * 108.35234 * 359.73972 * 8 7 6 16 16 H 0.97006 * 125.71534 * 180.02562 * 15 8 7 17 17 C 1.46499 * 119.99921 * 179.97438 * 2 1 3 18 18 H 1.08999 * 110.88837 * 183.88200 * 17 2 1 19 19 C 1.55161 * 111.00581 * 60.00093 * 17 2 1 20 20 C 1.54322 * 102.94210 * 206.42311 * 19 17 2 21 21 N 1.47023 * 107.27248 * 22.19461 * 20 19 17 22 22 C 1.36939 * 125.65036 * 181.02585 * 21 20 19 23 23 H 1.07996 * 120.00233 * 175.09486 * 22 21 20 24 24 C 1.38813 * 119.99937 * 355.08975 * 22 21 20 25 25 N 1.31619 * 119.99719 * 155.97396 * 24 22 21 26 26 Si 1.86803 * 119.99966 * 335.70283 * 24 22 21 27 27 H 1.48494 * 109.47121 * 185.79243 * 26 24 22 28 28 H 1.48497 * 109.47122 * 305.79365 * 26 24 22 29 29 H 1.48501 * 109.46975 * 65.79319 * 26 24 22 30 30 C 1.47427 * 108.70506 * 1.28182 * 21 20 19 31 31 H 1.09002 * 109.46814 * 275.77175 * 1 2 3 32 32 H 1.09002 * 109.47010 * 35.76903 * 1 2 3 33 33 H 1.09004 * 109.47285 * 155.77103 * 1 2 3 34 34 H 1.07995 * 126.27947 * 0.02562 * 6 5 3 35 35 H 1.07999 * 126.16848 * 180.18285 * 7 6 5 36 36 H 1.07998 * 120.07365 * 359.96936 * 10 9 8 37 37 H 1.07997 * 119.92885 * 180.23266 * 11 10 9 38 38 H 1.08003 * 119.85152 * 179.74133 * 12 11 10 39 39 H 1.08005 * 119.92916 * 179.97438 * 13 12 11 40 40 H 1.07995 * 120.08060 * 179.97438 * 14 13 12 41 41 H 1.08999 * 110.71782 * 88.06006 * 19 17 2 42 42 H 1.08997 * 110.87103 * 324.85737 * 19 17 2 43 43 H 1.08999 * 109.88663 * 262.77641 * 20 19 17 44 44 H 1.09005 * 110.01350 * 141.68197 * 20 19 17 45 45 H 0.96997 * 120.00584 * 354.72383 * 25 24 22 46 46 H 1.08999 * 110.36408 * 94.48006 * 30 21 20 47 47 H 1.08993 * 110.37039 * 216.80750 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3504 1.1703 -0.1167 5 6 1.4128 2.4327 0.1405 6 6 1.9522 3.6968 0.0096 7 6 0.9229 4.6135 0.2156 8 6 -0.2263 3.8995 0.4782 9 6 -1.5572 4.4764 0.7623 10 6 -2.6464 3.6387 1.0085 11 6 -3.8848 4.1836 1.2777 12 6 -4.0508 5.5572 1.2942 13 6 -2.9766 6.3931 1.0459 14 6 -1.7319 5.8613 0.7794 15 7 0.0741 2.5698 0.4320 16 1 -0.5507 1.8426 0.5794 17 6 2.1975 -1.2687 0.0006 18 1 3.2717 -1.0973 0.0694 19 6 1.8483 -2.1131 -1.2535 20 6 2.1063 -3.5589 -0.7795 21 7 2.0264 -3.5578 0.6885 22 6 2.2161 -4.6452 1.4989 23 1 2.2140 -4.5257 2.5723 24 6 2.4110 -5.9012 0.9409 25 7 3.0436 -6.8330 1.6220 26 14 1.7688 -6.2712 -0.7738 27 1 1.9784 -7.7087 -1.0814 28 1 0.3187 -5.9576 -0.8377 29 1 2.4988 -5.4413 -1.7656 30 6 1.7020 -2.1935 1.1434 31 1 -0.3633 0.1034 1.0225 32 1 -0.3633 0.8338 -0.6007 33 1 -0.3634 -0.9372 -0.4217 34 1 2.9822 3.9320 -0.2143 35 1 1.0109 5.6893 0.1800 36 1 -2.5191 2.5663 0.9915 37 1 -4.7274 3.5367 1.4721 38 1 -5.0234 5.9787 1.5014 39 1 -3.1130 7.4644 1.0598 40 1 -0.8943 6.5148 0.5853 41 1 2.5043 -1.8571 -2.0855 42 1 0.8033 -1.9795 -1.5329 43 1 3.0981 -3.8816 -1.0965 44 1 1.3500 -4.2271 -1.1914 45 1 3.4403 -6.6207 2.4813 46 1 0.6263 -2.0857 1.2822 47 1 2.2296 -1.9670 2.0698 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033705021.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:35 Heat of formation + Delta-G solvation = 94.801225 kcal Electronic energy + Delta-G solvation = -28607.124763 eV Core-core repulsion = 24757.467881 eV Total energy + Delta-G solvation = -3849.656882 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.77867 -39.78432 -38.99918 -37.62657 -35.29968 -32.66136 -32.30209 -31.84635 -30.99397 -29.72234 -28.77766 -27.97781 -27.15590 -24.37098 -23.44913 -23.13144 -21.88293 -21.00492 -20.77071 -19.97488 -19.70428 -18.12644 -17.53281 -17.18695 -16.60414 -16.02978 -15.71085 -15.30856 -15.20130 -14.77470 -14.42626 -14.36544 -14.13267 -13.82313 -13.65575 -13.52209 -13.37002 -13.07262 -12.91129 -12.80152 -12.74858 -12.56624 -12.23004 -12.18908 -11.73829 -11.52412 -11.44366 -11.12302 -11.09514 -10.56133 -10.18261 -10.03014 -9.85465 -9.54613 -9.42094 -9.30153 -9.08766 -8.73894 -8.51939 -7.94004 -7.14588 -6.37055 -3.23029 0.41068 0.94637 1.51722 2.49743 2.63872 2.89276 3.26112 3.40584 3.48206 3.48522 3.69638 4.21187 4.33262 4.40499 4.49752 4.61156 4.63430 4.67647 4.85171 4.93340 4.97561 5.00551 5.05147 5.10802 5.17938 5.22299 5.27238 5.40594 5.41567 5.46393 5.54927 5.71931 5.75351 5.80276 5.83389 5.99693 6.02859 6.06380 6.13030 6.27411 6.32803 6.47252 6.48268 6.49013 6.59645 6.70413 6.71913 7.02012 7.28496 7.59983 8.05200 8.29181 8.98952 9.52035 10.16882 11.12652 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018935 B = 0.002379 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.359882 B =11766.853492 C =12647.952871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.602 5.602 3 C 0.587 3.413 4 O -0.524 6.524 5 C -0.034 4.034 6 C -0.107 4.107 7 C -0.183 4.183 8 C 0.072 3.928 9 C -0.017 4.017 10 C -0.122 4.122 11 C -0.111 4.111 12 C -0.122 4.122 13 C -0.113 4.113 14 C -0.100 4.100 15 N -0.536 5.536 16 H 0.420 0.580 17 C 0.126 3.874 18 H 0.115 0.885 19 C -0.140 4.140 20 C 0.120 3.880 21 N -0.608 5.608 22 C -0.330 4.330 23 H 0.080 0.920 24 C -0.016 4.016 25 N -0.917 5.917 26 Si 1.053 2.947 27 H -0.299 1.299 28 H -0.298 1.298 29 H -0.281 1.281 30 C 0.132 3.868 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.151 0.849 35 H 0.146 0.854 36 H 0.115 0.885 37 H 0.126 0.874 38 H 0.124 0.876 39 H 0.127 0.873 40 H 0.130 0.870 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.049 0.951 44 H 0.029 0.971 45 H 0.263 0.737 46 H 0.024 0.976 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.172 27.743 -3.917 31.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.334 5.334 3 C 0.376 3.624 4 O -0.400 6.400 5 C -0.148 4.148 6 C -0.133 4.133 7 C -0.207 4.207 8 C -0.044 4.044 9 C -0.018 4.018 10 C -0.141 4.141 11 C -0.129 4.129 12 C -0.140 4.140 13 C -0.131 4.131 14 C -0.119 4.119 15 N -0.139 5.139 16 H 0.266 0.734 17 C 0.022 3.978 18 H 0.132 0.868 19 C -0.178 4.178 20 C -0.005 4.005 21 N -0.336 5.336 22 C -0.457 4.457 23 H 0.097 0.903 24 C -0.217 4.217 25 N -0.557 5.557 26 Si 0.886 3.114 27 H -0.227 1.227 28 H -0.226 1.226 29 H -0.208 1.208 30 C 0.004 3.996 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.112 0.888 34 H 0.169 0.831 35 H 0.164 0.836 36 H 0.134 0.866 37 H 0.144 0.856 38 H 0.142 0.858 39 H 0.145 0.855 40 H 0.148 0.852 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.067 0.933 44 H 0.046 0.954 45 H 0.073 0.927 46 H 0.042 0.958 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -13.729 26.228 -4.997 30.023 hybrid contribution -0.489 0.803 1.286 1.593 sum -14.218 27.032 -3.712 30.767 Atomic orbital electron populations 1.22109 0.81023 1.04277 1.01242 1.47649 1.06267 1.06177 1.73335 1.17095 0.86713 0.81772 0.76830 1.90852 1.12828 1.86312 1.50000 1.20494 0.83284 0.95508 1.15501 1.21226 0.99799 0.89604 1.02669 1.21092 0.91058 0.99304 1.09242 1.19183 0.94139 0.83078 1.08009 1.18102 0.89786 0.93489 1.00418 1.21119 0.92834 0.99107 1.01026 1.21064 0.96997 0.95423 0.99418 1.21265 0.99108 0.93590 1.00017 1.21114 0.92578 1.00085 0.99320 1.21130 0.97845 0.93400 0.99490 1.43131 1.09311 1.07456 1.54000 0.73408 1.22542 0.97886 0.80807 0.96551 0.86753 1.22959 1.01441 0.95947 0.97494 1.21925 0.99313 0.93549 0.85743 1.44760 1.83447 1.04760 1.00611 1.20091 1.49074 0.86186 0.90305 0.90264 1.25749 0.98784 0.91728 1.05441 1.70899 1.33080 1.36132 1.15593 0.84137 0.76219 0.74558 0.76498 1.22730 1.22646 1.20792 1.21806 0.97167 0.85471 0.95132 0.92259 0.91238 0.88772 0.83083 0.83635 0.86648 0.85638 0.85834 0.85522 0.85190 0.90754 0.91326 0.93299 0.95383 0.92673 0.95803 0.93268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.58 7.37 59.85 0.44 1.02 16 2 N -0.60 -8.53 2.91 -172.91 -0.50 -9.03 16 3 C 0.59 8.99 7.63 -12.90 -0.10 8.89 16 4 O -0.52 -9.81 16.29 5.18 0.08 -9.73 16 5 C -0.03 -0.43 6.62 -81.94 -0.54 -0.97 16 6 C -0.11 -1.25 10.61 -39.23 -0.42 -1.67 16 7 C -0.18 -1.78 10.22 -39.31 -0.40 -2.18 16 8 C 0.07 0.70 6.93 -82.07 -0.57 0.13 16 9 C -0.02 -0.14 5.87 -104.97 -0.62 -0.76 16 10 C -0.12 -0.92 9.70 -39.18 -0.38 -1.30 16 11 C -0.11 -0.72 10.03 -39.64 -0.40 -1.12 16 12 C -0.12 -0.73 10.04 -39.49 -0.40 -1.13 16 13 C -0.11 -0.68 10.03 -39.64 -0.40 -1.08 16 14 C -0.10 -0.71 9.57 -39.18 -0.37 -1.08 16 15 N -0.54 -5.36 4.97 -5.81 -0.03 -5.39 16 16 H 0.42 3.40 3.99 -40.82 -0.16 3.23 16 17 C 0.13 2.16 3.44 -65.66 -0.23 1.94 16 18 H 0.11 2.20 7.05 -51.93 -0.37 1.83 16 19 C -0.14 -2.34 6.49 -24.89 -0.16 -2.50 16 20 C 0.12 2.59 4.58 -3.06 -0.01 2.57 16 21 N -0.61 -14.80 3.34 -169.93 -0.57 -15.37 16 22 C -0.33 -9.43 10.48 -15.06 -0.16 -9.59 16 23 H 0.08 2.39 8.06 -52.49 -0.42 1.96 16 24 C -0.02 -0.49 5.47 -17.43 -0.10 -0.58 16 25 N -0.92 -28.75 13.70 55.49 0.76 -27.99 16 26 Si 1.05 26.26 24.76 -169.99 -4.21 22.06 16 27 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 28 H -0.30 -7.16 7.10 56.52 0.40 -6.76 16 29 H -0.28 -6.38 5.21 56.52 0.29 -6.08 16 30 C 0.13 2.61 6.79 -2.41 -0.02 2.59 16 31 H 0.06 0.51 7.42 -51.93 -0.39 0.13 16 32 H 0.07 0.57 5.70 -51.93 -0.30 0.28 16 33 H 0.09 0.95 6.36 -51.93 -0.33 0.62 16 34 H 0.15 1.68 8.06 -52.49 -0.42 1.26 16 35 H 0.15 1.05 7.26 -52.49 -0.38 0.67 16 36 H 0.12 0.70 7.14 -52.49 -0.37 0.33 16 37 H 0.13 0.59 8.06 -52.49 -0.42 0.16 16 38 H 0.12 0.49 8.06 -52.48 -0.42 0.06 16 39 H 0.13 0.48 8.06 -52.48 -0.42 0.06 16 40 H 0.13 0.71 6.98 -52.49 -0.37 0.35 16 41 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.07 1.00 6.48 -51.93 -0.34 0.67 16 43 H 0.05 1.12 6.90 -51.93 -0.36 0.76 16 44 H 0.03 0.63 4.24 -51.93 -0.22 0.41 16 45 H 0.26 8.18 8.73 -40.82 -0.36 7.82 16 46 H 0.02 0.45 6.95 -51.93 -0.36 0.09 16 47 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 369.01 15.07 5.56 5.56 Total: -1.00 -34.92 369.01 -9.88 -44.80 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -6.16 Total: 1.93 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: -4.82 Total: -6.82 kcal Atomic # 7 Polarization: -57.45 SS G_CDS: -0.34 Total: -57.79 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.08 Total: -9.73 kcal Atomic # 14 Polarization: 26.26 SS G_CDS: -4.21 Total: 22.06 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.92 -9.88 -44.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033705021.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.600 kcal (2) G-P(sol) polarization free energy of solvation -34.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds