Wall clock time and date at job start Tue Mar 31 2020 23:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50693 * 109.47301 * 2 1 4 4 N 1.29427 * 124.80495 * 90.02525 * 3 2 1 5 5 C 1.30941 * 117.36575 * 179.97438 * 4 3 2 6 6 C 1.50704 * 122.90367 * 180.02562 * 5 4 3 7 7 C 1.35661 * 114.19384 * 359.97438 * 5 4 3 8 8 C 1.46676 * 126.13518 * 179.97438 * 7 5 4 9 9 O 1.21695 * 119.99906 * 6.90012 * 8 7 5 10 10 N 1.34776 * 120.00291 * 186.88966 * 8 7 5 11 11 C 1.46497 * 120.00048 * 5.64445 * 10 8 7 12 12 C 1.50697 * 109.47112 * 274.70425 * 11 10 8 13 13 H 1.07992 * 120.00085 * 359.97438 * 12 11 10 14 14 C 1.37882 * 119.99627 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00263 * 359.97438 * 14 12 11 16 16 Si 1.86807 * 119.99793 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47045 * 89.99752 * 16 14 12 18 18 H 1.48491 * 109.47169 * 210.00122 * 16 14 12 19 19 H 1.48499 * 109.46964 * 330.00111 * 16 14 12 20 20 C 1.46507 * 120.00092 * 185.64392 * 10 8 7 21 21 C 1.53001 * 109.46949 * 270.00482 * 20 10 8 22 22 C 1.52996 * 109.47213 * 180.02562 * 21 20 10 23 23 N 1.46900 * 109.47255 * 179.97438 * 22 21 20 24 24 C 1.46897 * 110.99906 * 66.04846 * 23 22 21 25 25 C 1.46900 * 111.00177 * 189.99751 * 23 22 21 26 26 S 1.70955 * 124.80521 * 270.30094 * 3 2 1 27 27 H 1.09003 * 109.46814 * 299.99776 * 1 2 3 28 28 H 1.09000 * 109.46935 * 59.99711 * 1 2 3 29 29 H 1.09001 * 109.47377 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46814 * 240.00224 * 2 1 3 31 31 H 1.09000 * 109.46935 * 120.00289 * 2 1 3 32 32 H 1.09002 * 109.46825 * 269.99401 * 6 5 4 33 33 H 1.08992 * 109.47306 * 29.99756 * 6 5 4 34 34 H 1.08997 * 109.46858 * 149.99833 * 6 5 4 35 35 H 1.09008 * 109.47078 * 34.70336 * 11 10 8 36 36 H 1.09001 * 109.46948 * 154.69832 * 11 10 8 37 37 H 0.97002 * 119.99699 * 180.02562 * 15 14 12 38 38 H 1.08997 * 109.46737 * 29.99592 * 20 10 8 39 39 H 1.08993 * 109.47093 * 150.00245 * 20 10 8 40 40 H 1.09007 * 109.46891 * 299.99651 * 21 20 10 41 41 H 1.08999 * 109.47711 * 59.99317 * 21 20 10 42 42 H 1.09000 * 109.47007 * 299.99928 * 22 21 20 43 43 H 1.09002 * 109.46944 * 59.99831 * 22 21 20 44 44 H 1.08999 * 109.47722 * 59.99343 * 24 23 22 45 45 H 1.08994 * 109.47725 * 179.97438 * 24 23 22 46 46 H 1.09008 * 109.46830 * 300.00107 * 24 23 22 47 47 H 1.09001 * 109.47098 * 60.00020 * 25 23 22 48 48 H 1.08997 * 109.47375 * 180.02562 * 25 23 22 49 49 H 1.09003 * 109.47390 * 300.00369 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2791 2.1171 1.0627 5 6 2.7123 3.3410 0.8932 6 6 3.0386 4.2605 2.0418 7 6 2.8431 3.7096 -0.4058 8 6 3.3044 5.0141 -0.8926 9 8 3.7305 5.8405 -0.1074 10 7 3.2566 5.2974 -2.2093 11 6 2.6311 4.3541 -3.1394 12 6 3.6396 3.3138 -3.5536 13 1 4.6459 3.3518 -3.1635 14 6 3.2775 2.3134 -4.4307 15 7 2.0519 2.2669 -4.9054 16 14 4.5278 1.0242 -4.9449 17 1 4.4722 -0.1225 -4.0030 18 1 4.2164 0.5526 -6.3180 19 1 5.8888 1.6179 -4.9221 20 6 3.8302 6.5489 -2.7106 21 6 2.7595 7.6419 -2.6974 22 6 3.3583 8.9486 -3.2215 23 7 2.3302 9.9978 -3.2095 24 6 1.9275 10.3245 -1.8350 25 6 2.7929 11.1966 -3.9213 26 16 2.3507 2.3432 -1.4037 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.1486 4.8252 2.3193 33 1 3.3756 3.6711 2.8945 34 1 3.8277 4.9501 1.7423 35 1 1.7871 3.8675 -2.6505 36 1 2.2802 4.8913 -4.0205 37 1 1.7971 1.5629 -5.5222 38 1 4.6624 6.8480 -2.0735 39 1 4.1872 6.4023 -3.7299 40 1 1.9272 7.3428 -3.3346 41 1 2.4024 7.7885 -1.6781 42 1 4.1908 9.2479 -2.5849 43 1 3.7150 8.8017 -4.2410 44 1 2.7943 10.6780 -1.2767 45 1 1.1660 11.1040 -1.8550 46 1 1.5237 9.4338 -1.3534 47 1 3.0184 10.9401 -4.9565 48 1 2.0129 11.9576 -3.8968 49 1 3.6911 11.5818 -3.4386 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069576339.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:32 Heat of formation + Delta-G solvation = -0.216975 kcal Electronic energy + Delta-G solvation = -28226.770566 eV Core-core repulsion = 24508.437337 eV Total energy + Delta-G solvation = -3718.333229 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.57512 -38.60785 -37.54268 -35.31172 -33.80051 -33.18668 -31.72425 -30.16846 -27.94604 -27.67054 -27.59221 -25.63076 -24.82151 -23.28777 -22.76582 -21.29686 -20.75293 -20.00716 -17.69599 -17.35323 -16.84657 -16.05674 -15.66022 -15.43318 -15.05721 -14.90447 -14.66265 -14.46625 -14.08945 -13.84566 -13.71763 -13.51446 -13.03527 -12.74461 -12.60196 -12.45566 -12.42425 -12.20954 -12.16085 -11.79965 -11.70197 -11.57914 -11.47268 -11.35949 -11.30708 -11.27772 -11.02693 -10.90994 -10.85810 -10.41016 -10.24397 -10.19669 -10.00497 -9.15799 -8.99833 -8.43019 -8.39712 -8.36715 -8.03406 -7.63232 -6.47301 -4.49045 1.13859 2.33582 2.73983 3.08740 3.16241 3.18998 3.23251 3.73294 3.92553 4.08733 4.12887 4.70647 4.87496 5.05013 5.12941 5.24924 5.32542 5.35764 5.42608 5.48497 5.54057 5.56282 5.61847 5.66411 5.76487 5.76983 5.82961 5.90263 5.96893 5.97113 6.03789 6.10177 6.16361 6.18705 6.38041 6.40532 6.43406 6.49932 6.54621 6.61343 6.88801 7.01705 7.02669 7.04923 7.34342 7.48684 7.67630 8.12874 8.50145 8.55477 8.88903 9.09002 10.55673 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009986 B = 0.004223 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2803.127959 B = 6629.108663 C = 8517.441481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.042 4.042 3 C -0.066 4.066 4 N -0.501 5.501 5 C 0.122 3.878 6 C -0.081 4.081 7 C -0.331 4.331 8 C 0.597 3.403 9 O -0.560 6.560 10 N -0.595 5.595 11 C 0.224 3.776 12 C -0.530 4.530 13 H 0.070 0.930 14 C 0.078 3.922 15 N -0.868 5.868 16 Si 0.889 3.111 17 H -0.272 1.272 18 H -0.280 1.280 19 H -0.268 1.268 20 C 0.128 3.872 21 C -0.130 4.130 22 C 0.059 3.941 23 N -0.548 5.548 24 C 0.022 3.978 25 C 0.025 3.975 26 S 0.372 5.628 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.095 0.905 35 H 0.042 0.958 36 H 0.052 0.948 37 H 0.272 0.728 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.065 0.935 42 H 0.034 0.966 43 H 0.075 0.925 44 H 0.024 0.976 45 H 0.063 0.937 46 H 0.073 0.927 47 H 0.068 0.932 48 H 0.065 0.935 49 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.119 5.380 2.720 6.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.082 4.082 3 C -0.336 4.336 4 N -0.217 5.217 5 C -0.021 4.021 6 C -0.140 4.140 7 C -0.456 4.456 8 C 0.386 3.614 9 O -0.443 6.443 10 N -0.325 5.325 11 C 0.102 3.898 12 C -0.575 4.575 13 H 0.088 0.912 14 C -0.130 4.130 15 N -0.504 5.504 16 Si 0.715 3.285 17 H -0.198 1.198 18 H -0.205 1.205 19 H -0.193 1.193 20 C 0.004 3.996 21 C -0.169 4.169 22 C -0.069 4.069 23 N -0.272 5.272 24 C -0.126 4.126 25 C -0.123 4.123 26 S 0.642 5.358 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.113 0.887 35 H 0.060 0.940 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.052 0.948 43 H 0.094 0.906 44 H 0.043 0.957 45 H 0.082 0.918 46 H 0.092 0.908 47 H 0.086 0.914 48 H 0.084 0.916 49 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -1.691 4.931 2.155 5.641 hybrid contribution 1.517 0.027 0.674 1.660 sum -0.174 4.957 2.829 5.710 Atomic orbital electron populations 1.21738 0.94260 1.01686 1.02511 1.20025 0.96145 0.89083 1.02994 1.28553 1.02685 1.03141 0.99202 1.66041 1.16692 1.05595 1.33408 1.20299 0.97523 0.91107 0.93144 1.20491 1.02699 0.97001 0.93813 1.25591 1.20251 1.01820 0.97968 1.16812 0.77728 0.84687 0.82135 1.90638 1.49677 1.48735 1.55257 1.47976 1.57468 1.20345 1.06687 1.19692 0.93311 0.87783 0.89046 1.21561 0.98410 1.10564 1.26978 0.91167 1.24949 0.95592 0.97662 0.94798 1.69913 1.17256 1.33159 1.30048 0.86594 0.81828 0.81627 0.78496 1.19754 1.20503 1.19291 1.21211 0.95368 0.83099 0.99947 1.21961 0.99596 0.93404 1.01962 1.22075 0.92272 0.91468 1.01102 1.61972 1.40075 1.09161 1.15975 1.22428 0.99630 1.01744 0.88820 1.22368 0.98724 0.92304 0.98934 1.86908 1.49942 0.99207 0.99751 0.92418 0.92231 0.92157 0.90346 0.90371 0.91617 0.92023 0.88658 0.94046 0.92993 0.91765 0.90992 0.90246 0.90905 0.91590 0.94781 0.90644 0.95748 0.91772 0.90810 0.91364 0.91621 0.95902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.89 37.16 0.37 -1.57 16 2 C -0.04 -0.65 6.51 -27.89 -0.18 -0.83 16 3 C -0.07 -1.27 6.64 -13.29 -0.09 -1.36 16 4 N -0.50 -10.24 10.50 -7.70 -0.08 -10.32 16 5 C 0.12 2.53 6.79 -83.89 -0.57 1.96 16 6 C -0.08 -1.46 9.79 36.01 0.35 -1.10 16 7 C -0.33 -7.15 6.19 -37.10 -0.23 -7.38 16 8 C 0.60 13.03 7.58 -12.85 -0.10 12.93 16 9 O -0.56 -12.54 13.90 5.19 0.07 -12.46 16 10 N -0.60 -12.25 2.47 -176.60 -0.44 -12.69 16 11 C 0.22 4.95 4.72 -5.20 -0.02 4.92 16 12 C -0.53 -12.36 6.62 -34.44 -0.23 -12.59 16 13 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 14 C 0.08 1.81 4.88 -17.82 -0.09 1.72 16 15 N -0.87 -20.87 13.29 55.43 0.74 -20.13 16 16 Si 0.89 18.59 29.54 -169.99 -5.02 13.57 16 17 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 18 H -0.28 -5.82 7.11 56.52 0.40 -5.41 16 19 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 20 C 0.13 2.23 5.34 -4.04 -0.02 2.20 16 21 C -0.13 -2.03 5.46 -26.73 -0.15 -2.18 16 22 C 0.06 0.78 4.96 -3.83 -0.02 0.76 16 23 N -0.55 -6.99 5.02 -251.26 -1.26 -8.25 16 24 C 0.02 0.26 9.32 60.06 0.56 0.82 16 25 C 0.03 0.26 9.57 60.06 0.57 0.83 16 26 S 0.37 7.73 15.78 -107.50 -1.70 6.03 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.09 1.80 5.87 -51.93 -0.30 1.50 16 35 H 0.04 0.97 4.98 -26.80 -0.13 0.84 16 36 H 0.05 1.19 8.04 -51.93 -0.42 0.77 16 37 H 0.27 6.25 8.31 -40.82 -0.34 5.91 16 38 H 0.07 1.26 7.50 -51.93 -0.39 0.87 16 39 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 40 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.07 1.12 6.55 -51.93 -0.34 0.77 16 42 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 43 H 0.08 0.94 8.06 -51.93 -0.42 0.52 16 44 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 45 H 0.06 0.65 8.12 -51.93 -0.42 0.23 16 46 H 0.07 0.95 6.47 -51.92 -0.34 0.61 16 47 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 48 H 0.06 0.59 8.12 -51.93 -0.42 0.17 16 49 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 LS Contribution 401.64 15.07 6.05 6.05 Total: -1.00 -26.51 401.64 -9.69 -36.20 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -8.22 Total: 2.87 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: 0.16 Total: -0.86 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: -1.04 Total: -51.39 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.07 Total: -12.46 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.02 Total: 13.57 kcal Atomic # 16 Polarization: 7.73 SS G_CDS: -1.70 Total: 6.03 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -26.51 -9.69 -36.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069576339.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.981 kcal (2) G-P(sol) polarization free energy of solvation -26.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds