Wall clock time and date at job start Tue Mar 31 2020 23:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50693 * 109.47301 * 2 1 4 4 N 1.29427 * 124.80495 * 90.02525 * 3 2 1 5 5 C 1.30941 * 117.36575 * 179.97438 * 4 3 2 6 6 C 1.50704 * 122.90367 * 180.02562 * 5 4 3 7 7 C 1.35661 * 114.19384 * 359.97438 * 5 4 3 8 8 C 1.46676 * 126.13518 * 179.97438 * 7 5 4 9 9 O 1.21695 * 119.99906 * 6.90012 * 8 7 5 10 10 N 1.34776 * 120.00291 * 186.88966 * 8 7 5 11 11 C 1.46497 * 120.00048 * 5.64445 * 10 8 7 12 12 C 1.50697 * 109.47112 * 274.70425 * 11 10 8 13 13 H 1.07992 * 120.00085 * 359.97438 * 12 11 10 14 14 C 1.37882 * 119.99627 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00263 * 359.97438 * 14 12 11 16 16 Si 1.86807 * 119.99793 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47045 * 89.99752 * 16 14 12 18 18 H 1.48491 * 109.47169 * 210.00122 * 16 14 12 19 19 H 1.48499 * 109.46964 * 330.00111 * 16 14 12 20 20 C 1.46507 * 120.00092 * 185.64392 * 10 8 7 21 21 C 1.53001 * 109.46949 * 270.00482 * 20 10 8 22 22 C 1.52996 * 109.47213 * 180.02562 * 21 20 10 23 23 N 1.46900 * 109.47255 * 179.97438 * 22 21 20 24 24 C 1.46897 * 110.99906 * 66.04846 * 23 22 21 25 25 C 1.46900 * 111.00177 * 189.99751 * 23 22 21 26 26 S 1.70955 * 124.80521 * 270.30094 * 3 2 1 27 27 H 1.09003 * 109.46814 * 299.99776 * 1 2 3 28 28 H 1.09000 * 109.46935 * 59.99711 * 1 2 3 29 29 H 1.09001 * 109.47377 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46814 * 240.00224 * 2 1 3 31 31 H 1.09000 * 109.46935 * 120.00289 * 2 1 3 32 32 H 1.09002 * 109.46825 * 269.99401 * 6 5 4 33 33 H 1.08992 * 109.47306 * 29.99756 * 6 5 4 34 34 H 1.08997 * 109.46858 * 149.99833 * 6 5 4 35 35 H 1.09008 * 109.47078 * 34.70336 * 11 10 8 36 36 H 1.09001 * 109.46948 * 154.69832 * 11 10 8 37 37 H 0.97002 * 119.99699 * 180.02562 * 15 14 12 38 38 H 1.08997 * 109.46737 * 29.99592 * 20 10 8 39 39 H 1.08993 * 109.47093 * 150.00245 * 20 10 8 40 40 H 1.09007 * 109.46891 * 299.99651 * 21 20 10 41 41 H 1.08999 * 109.47711 * 59.99317 * 21 20 10 42 42 H 1.09000 * 109.47007 * 299.99928 * 22 21 20 43 43 H 1.09002 * 109.46944 * 59.99831 * 22 21 20 44 44 H 1.08999 * 109.47722 * 59.99343 * 24 23 22 45 45 H 1.08994 * 109.47725 * 179.97438 * 24 23 22 46 46 H 1.09008 * 109.46830 * 300.00107 * 24 23 22 47 47 H 1.09001 * 109.47098 * 60.00020 * 25 23 22 48 48 H 1.08997 * 109.47375 * 180.02562 * 25 23 22 49 49 H 1.09003 * 109.47390 * 300.00369 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2791 2.1171 1.0627 5 6 2.7123 3.3410 0.8932 6 6 3.0386 4.2605 2.0418 7 6 2.8431 3.7096 -0.4058 8 6 3.3044 5.0141 -0.8926 9 8 3.7305 5.8405 -0.1074 10 7 3.2566 5.2974 -2.2093 11 6 2.6311 4.3541 -3.1394 12 6 3.6396 3.3138 -3.5536 13 1 4.6459 3.3518 -3.1635 14 6 3.2775 2.3134 -4.4307 15 7 2.0519 2.2669 -4.9054 16 14 4.5278 1.0242 -4.9449 17 1 4.4722 -0.1225 -4.0030 18 1 4.2164 0.5526 -6.3180 19 1 5.8888 1.6179 -4.9221 20 6 3.8302 6.5489 -2.7106 21 6 2.7595 7.6419 -2.6974 22 6 3.3583 8.9486 -3.2215 23 7 2.3302 9.9978 -3.2095 24 6 1.9275 10.3245 -1.8350 25 6 2.7929 11.1966 -3.9213 26 16 2.3507 2.3432 -1.4037 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.1486 4.8252 2.3193 33 1 3.3756 3.6711 2.8945 34 1 3.8277 4.9501 1.7423 35 1 1.7871 3.8675 -2.6505 36 1 2.2802 4.8913 -4.0205 37 1 1.7971 1.5629 -5.5222 38 1 4.6624 6.8480 -2.0735 39 1 4.1872 6.4023 -3.7299 40 1 1.9272 7.3428 -3.3346 41 1 2.4024 7.7885 -1.6781 42 1 4.1908 9.2479 -2.5849 43 1 3.7150 8.8017 -4.2410 44 1 2.7943 10.6780 -1.2767 45 1 1.1660 11.1040 -1.8550 46 1 1.5237 9.4338 -1.3534 47 1 3.0184 10.9401 -4.9565 48 1 2.0129 11.9576 -3.8968 49 1 3.6911 11.5818 -3.4386 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069576339.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:31 Heat of formation + Delta-G solvation = -14.722273 kcal Electronic energy + Delta-G solvation = -28227.399563 eV Core-core repulsion = 24508.437337 eV Total energy + Delta-G solvation = -3718.962226 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.20544 -40.18986 -38.61942 -36.95822 -35.19030 -34.79760 -33.14916 -31.60294 -29.41784 -29.38262 -28.49719 -26.94577 -26.16256 -25.05452 -24.02199 -22.67210 -21.91225 -21.54173 -19.34085 -18.95617 -18.63063 -17.61992 -17.07334 -16.55154 -16.47887 -16.30080 -16.19033 -15.71909 -15.45770 -15.16873 -15.05852 -14.81177 -14.51127 -14.39412 -14.25616 -13.96252 -13.66137 -13.44428 -13.27283 -13.14990 -12.96827 -12.92831 -12.84188 -12.65642 -12.55929 -12.49231 -12.43207 -12.37576 -12.04186 -12.01663 -11.84194 -11.77245 -11.54141 -10.84872 -10.73716 -10.08392 -10.02859 -9.69091 -9.32932 -9.25544 -8.26090 -6.33508 -0.46661 0.71986 1.13467 1.42589 1.46555 1.52599 1.60651 2.18125 2.28688 2.41057 3.03845 3.06497 3.25696 3.75505 3.98696 4.03563 4.11086 4.21738 4.24995 4.29942 4.37051 4.40617 4.43567 4.50081 4.60350 4.65522 4.68986 4.70181 4.75858 4.78003 4.78998 4.95231 4.96817 4.98567 5.01239 5.01942 5.06435 5.10468 5.13764 5.26895 5.30496 5.51242 5.59550 5.75558 5.88084 6.04052 6.11413 6.41412 6.69349 6.93047 7.18120 7.29616 8.77220 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009986 B = 0.004223 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2803.127959 B = 6629.108663 C = 8517.441481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.047 4.047 3 C -0.048 4.048 4 N -0.512 5.512 5 C 0.119 3.881 6 C -0.076 4.076 7 C -0.356 4.356 8 C 0.591 3.409 9 O -0.573 6.573 10 N -0.596 5.596 11 C 0.236 3.764 12 C -0.537 4.537 13 H 0.055 0.945 14 C 0.054 3.946 15 N -0.890 5.890 16 Si 0.930 3.070 17 H -0.266 1.266 18 H -0.275 1.275 19 H -0.274 1.274 20 C 0.126 3.874 21 C -0.115 4.115 22 C 0.066 3.934 23 N -0.565 5.565 24 C 0.023 3.977 25 C 0.025 3.975 26 S 0.342 5.658 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.034 0.966 36 H 0.040 0.960 37 H 0.275 0.725 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.060 0.940 41 H 0.050 0.950 42 H 0.037 0.963 43 H 0.085 0.915 44 H 0.027 0.973 45 H 0.081 0.919 46 H 0.056 0.944 47 H 0.073 0.927 48 H 0.078 0.922 49 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.185 4.904 3.007 5.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.087 4.087 3 C -0.318 4.318 4 N -0.229 5.229 5 C -0.024 4.024 6 C -0.135 4.135 7 C -0.481 4.481 8 C 0.381 3.619 9 O -0.457 6.457 10 N -0.325 5.325 11 C 0.114 3.886 12 C -0.580 4.580 13 H 0.073 0.927 14 C -0.152 4.152 15 N -0.526 5.526 16 Si 0.755 3.245 17 H -0.191 1.191 18 H -0.200 1.200 19 H -0.198 1.198 20 C 0.003 3.997 21 C -0.154 4.154 22 C -0.062 4.062 23 N -0.289 5.289 24 C -0.125 4.125 25 C -0.123 4.123 26 S 0.611 5.389 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.112 0.888 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.051 0.949 36 H 0.058 0.942 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.104 0.896 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.055 0.945 43 H 0.104 0.896 44 H 0.045 0.955 45 H 0.099 0.901 46 H 0.075 0.925 47 H 0.092 0.908 48 H 0.097 0.903 49 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -1.745 4.488 2.418 5.388 hybrid contribution 1.487 0.148 0.680 1.642 sum -0.258 4.637 3.098 5.582 Atomic orbital electron populations 1.21721 0.92617 1.03594 1.01774 1.20278 0.97444 0.86633 1.04325 1.29123 1.00529 1.04306 0.97848 1.66154 1.17532 1.05611 1.33554 1.20785 0.96408 0.91554 0.93613 1.20494 1.02847 0.96657 0.93479 1.25671 1.21727 1.02115 0.98550 1.16942 0.77756 0.84853 0.82387 1.90616 1.50446 1.49134 1.55458 1.48033 1.57180 1.21062 1.06275 1.19445 0.92991 0.87618 0.88578 1.21471 0.97779 1.11301 1.27496 0.92673 1.25353 0.96594 0.98633 0.94618 1.69963 1.18236 1.33815 1.30566 0.85949 0.79956 0.80124 0.78457 1.19108 1.19993 1.19832 1.21367 0.95811 0.82472 1.00055 1.21768 0.98550 0.94200 1.00865 1.21964 0.92295 0.90452 1.01502 1.61959 1.40129 1.10204 1.16595 1.22416 1.00158 1.01462 0.88437 1.22427 0.99438 0.91490 0.98908 1.86865 1.51191 0.99916 1.00962 0.92939 0.93181 0.88974 0.89187 0.88792 0.90446 0.90157 0.89744 0.94922 0.94188 0.91501 0.91101 0.89566 0.92172 0.93123 0.94478 0.89645 0.95463 0.90071 0.92508 0.90780 0.90306 0.95265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 9.89 71.98 0.71 -2.70 16 2 C -0.05 -1.33 6.51 29.85 0.19 -1.14 16 3 C -0.05 -1.79 6.64 88.46 0.59 -1.20 16 4 N -0.51 -20.37 10.50 -178.29 -1.87 -22.25 16 5 C 0.12 4.89 6.79 42.10 0.29 5.18 16 6 C -0.08 -2.67 9.79 71.24 0.70 -1.97 16 7 C -0.36 -15.56 6.19 23.88 0.15 -15.41 16 8 C 0.59 26.35 7.58 86.45 0.65 27.00 16 9 O -0.57 -26.05 13.90 -4.33 -0.06 -26.11 16 10 N -0.60 -25.21 2.47 -830.87 -2.05 -27.26 16 11 C 0.24 10.72 4.72 85.63 0.40 11.13 16 12 C -0.54 -25.40 6.62 25.60 0.17 -25.23 16 13 H 0.06 2.74 7.81 -2.91 -0.02 2.72 16 14 C 0.05 2.51 4.88 84.66 0.41 2.92 16 15 N -0.89 -42.83 13.29 21.45 0.28 -42.55 16 16 Si 0.93 37.60 29.54 68.60 2.03 39.63 16 17 H -0.27 -10.43 7.11 99.48 0.71 -9.73 16 18 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 19 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 20 C 0.13 4.47 5.34 86.38 0.46 4.93 16 21 C -0.11 -3.65 5.46 30.59 0.17 -3.48 16 22 C 0.07 1.72 4.96 86.30 0.43 2.14 16 23 N -0.56 -13.83 5.02 -948.85 -4.76 -18.59 16 24 C 0.02 0.54 9.32 127.69 1.19 1.73 16 25 C 0.03 0.47 9.57 127.69 1.22 1.69 16 26 S 0.34 14.27 15.78 -56.49 -0.89 13.38 16 27 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.09 2.38 8.14 -2.39 -0.02 2.37 16 31 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 32 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 33 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.08 3.18 5.87 -2.39 -0.01 3.16 16 35 H 0.03 1.59 4.98 -18.36 -0.09 1.49 16 36 H 0.04 1.89 8.04 -2.39 -0.02 1.87 16 37 H 0.28 12.56 8.31 -92.71 -0.77 11.79 16 38 H 0.07 2.53 7.50 -2.39 -0.02 2.51 16 39 H 0.09 2.92 8.07 -2.39 -0.02 2.90 16 40 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 41 H 0.05 1.76 6.55 -2.39 -0.02 1.74 16 42 H 0.04 0.94 8.12 -2.39 -0.02 0.92 16 43 H 0.09 2.03 8.06 -2.39 -0.02 2.01 16 44 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.08 1.55 8.12 -2.39 -0.02 1.53 16 46 H 0.06 1.48 6.47 -2.38 -0.02 1.46 16 47 H 0.07 1.28 8.12 -2.39 -0.02 1.26 16 48 H 0.08 1.25 8.12 -2.39 -0.02 1.23 16 49 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 Total: -1.00 -56.03 401.64 1.25 -54.77 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: 0.84 Total: 23.39 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: 7.74 Total: 5.58 kcal Atomic # 7 Polarization: -102.24 SS G_CDS: -8.40 Total: -110.64 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -0.06 Total: -26.11 kcal Atomic # 14 Polarization: 37.60 SS G_CDS: 2.03 Total: 39.63 kcal Atomic # 16 Polarization: 14.27 SS G_CDS: -0.89 Total: 13.38 kcal Total: -56.03 1.25 -54.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069576339.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.049 kcal (2) G-P(sol) polarization free energy of solvation -56.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds