Wall clock time and date at job start Tue Mar 31 2020 22:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99780 * 2 1 4 4 H 1.48502 * 109.47238 * 270.00308 * 3 2 1 5 5 H 1.48490 * 109.47318 * 30.00431 * 3 2 1 6 6 H 1.48500 * 109.46954 * 150.00517 * 3 2 1 7 7 C 1.37875 * 120.00158 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00126 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00063 * 359.97438 * 7 2 1 10 10 N 1.46890 * 109.47441 * 185.06391 * 9 7 2 11 11 C 1.46900 * 111.00255 * 199.69228 * 10 9 7 12 12 C 1.50700 * 109.46862 * 71.94157 * 11 10 9 13 13 C 1.34514 * 125.79055 * 89.72205 * 12 11 10 14 14 C 1.41382 * 106.83805 * 179.88704 * 13 12 11 15 15 C 1.34508 * 106.84196 * 0.36885 * 14 13 12 16 16 O 1.34302 * 108.42324 * 359.77426 * 15 14 13 17 17 C 1.46897 * 111.00041 * 75.73704 * 10 9 7 18 18 C 1.53001 * 109.47400 * 190.00207 * 17 10 9 19 19 H 1.09000 * 109.46826 * 304.99806 * 18 17 10 20 20 O 1.42898 * 109.47352 * 65.00015 * 18 17 10 21 21 C 1.53004 * 109.47181 * 185.00072 * 18 17 10 22 22 O 1.42899 * 109.46777 * 174.99648 * 21 18 17 23 23 C 1.42903 * 113.99616 * 179.97438 * 22 21 18 24 24 C 1.53001 * 109.47095 * 179.97438 * 23 22 21 25 25 H 1.08998 * 110.55357 * 307.88575 * 24 23 22 26 26 C 1.54995 * 110.62053 * 185.00176 * 24 23 22 27 27 C 1.54808 * 102.09666 * 204.32178 * 26 24 23 28 28 C 1.54110 * 104.18690 * 20.87964 * 27 26 24 29 29 O 1.43749 * 107.41732 * 1.95530 * 28 27 26 30 30 H 0.97003 * 119.99946 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.46667 * 65.06327 * 9 7 2 32 32 H 1.08995 * 109.47070 * 305.06993 * 9 7 2 33 33 H 1.09007 * 109.47289 * 191.94044 * 11 10 9 34 34 H 1.09000 * 109.46921 * 311.94323 * 11 10 9 35 35 H 1.07995 * 126.58061 * 0.02562 * 13 12 11 36 36 H 1.08002 * 126.57474 * 180.16195 * 14 13 12 37 37 H 1.08010 * 125.78768 * 179.75552 * 15 14 13 38 38 H 1.09004 * 109.46985 * 70.00119 * 17 10 9 39 39 H 1.09005 * 109.47230 * 310.00044 * 17 10 9 40 40 H 0.96701 * 113.99650 * 59.99999 * 20 18 17 41 41 H 1.08994 * 109.46984 * 55.00193 * 21 18 17 42 42 H 1.08993 * 109.47163 * 294.99717 * 21 18 17 43 43 H 1.09003 * 109.46835 * 60.00607 * 23 22 21 44 44 H 1.08999 * 109.47672 * 300.00325 * 23 22 21 45 45 H 1.09000 * 110.90540 * 86.12160 * 26 24 23 46 46 H 1.09002 * 110.93617 * 322.53082 * 26 24 23 47 47 H 1.08999 * 110.48933 * 262.20448 * 27 26 24 48 48 H 1.08997 * 110.60420 * 139.60842 * 27 26 24 49 49 H 1.08998 * 109.87803 * 121.45668 * 28 27 26 50 50 H 1.08999 * 109.87936 * 242.46008 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2010 -3.6130 0.1211 11 6 1.5966 -4.8724 -0.3335 12 6 1.4575 -4.8500 -1.8339 13 6 2.3802 -5.2745 -2.7159 14 6 1.8369 -5.0735 -4.0055 15 6 0.6181 -4.5307 -3.8347 16 8 0.3936 -4.3976 -2.5173 17 6 2.6967 -3.7341 1.4986 18 6 3.8578 -4.7297 1.5371 19 1 3.5376 -5.6781 1.1056 20 8 4.9559 -4.2104 0.7845 21 6 4.2926 -4.9503 2.9874 22 8 5.2969 -5.9657 3.0343 23 6 5.7749 -6.2500 4.3507 24 6 6.8400 -7.3462 4.2809 25 1 6.4667 -8.2078 3.7274 26 6 7.2873 -7.7642 5.7048 27 6 8.7037 -8.3328 5.4461 28 6 9.1194 -7.7123 4.0981 29 8 8.0540 -6.8438 3.6774 30 1 -0.4850 0.8401 0.0004 31 1 0.6939 -2.5969 -0.9322 32 1 0.5584 -2.5188 0.8408 33 1 2.2328 -5.7075 -0.0400 34 1 0.6126 -4.9880 0.1210 35 1 3.3490 -5.6911 -2.4834 36 1 2.3110 -5.3075 -4.9473 37 1 -0.0642 -4.2492 -4.6234 38 1 1.8930 -4.0880 2.1442 39 1 3.0412 -2.7606 1.8476 40 1 5.2933 -3.3658 1.1128 41 1 3.4331 -5.2618 3.5809 42 1 4.6957 -4.0216 3.3911 43 1 4.9463 -6.5883 4.9729 44 1 6.2089 -5.3482 4.7824 45 1 6.6279 -8.5319 6.1099 46 1 7.3300 -6.9008 6.3688 47 1 8.6708 -9.4197 5.3718 48 1 9.3902 -8.0259 6.2352 49 1 10.0382 -7.1390 4.2216 50 1 9.2701 -8.4990 3.3588 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078321258.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:44 Heat of formation + Delta-G solvation = -118.086452 kcal Electronic energy + Delta-G solvation = -29766.902981 eV Core-core repulsion = 25568.412926 eV Total energy + Delta-G solvation = -4198.490055 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.94643 -39.74045 -38.48643 -37.05690 -35.38790 -32.68106 -32.47192 -32.33090 -31.27419 -30.38260 -29.40135 -27.08181 -25.99813 -25.03122 -23.75579 -22.00556 -21.72388 -21.30958 -21.12367 -20.69740 -19.56659 -17.25593 -16.90571 -16.77879 -16.43519 -16.28959 -16.08228 -15.63352 -15.53266 -15.33821 -14.84008 -14.56173 -14.17026 -14.03212 -13.89790 -13.77331 -13.35980 -13.02077 -12.50290 -12.24661 -12.23125 -12.13915 -12.11552 -12.00581 -11.83263 -11.60123 -11.54612 -11.40758 -11.20045 -11.06301 -11.01098 -10.78118 -10.58663 -10.32544 -9.94900 -9.88062 -9.67903 -9.45533 -9.35475 -9.19909 -8.40207 -7.90630 -7.31270 -6.00104 -4.01387 2.31118 3.16939 3.33333 3.39482 3.39613 3.42692 3.57111 3.60021 4.18853 4.41732 4.46484 4.54879 4.72588 4.82622 4.88659 5.00051 5.02089 5.14462 5.18733 5.22180 5.26161 5.33622 5.34121 5.35444 5.43945 5.48558 5.50284 5.53533 5.55470 5.56910 5.63737 5.73064 5.74075 5.86867 5.94260 6.20545 6.33120 6.48229 6.50281 6.65515 6.65571 7.05137 7.12038 7.21473 7.29225 7.74450 7.82270 8.05204 8.13203 8.19338 8.50683 9.06725 9.62406 11.10249 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.009982 B = 0.002646 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2804.482885 B =10578.738481 C =12491.637144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.897 3.103 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.502 4.502 8 H 0.064 0.936 9 C 0.189 3.811 10 N -0.519 5.519 11 C 0.127 3.873 12 C 0.020 3.980 13 C -0.203 4.203 14 C -0.219 4.219 15 C -0.049 4.049 16 O -0.170 6.170 17 C 0.037 3.963 18 C 0.114 3.886 19 H 0.098 0.902 20 O -0.538 6.538 21 C 0.030 3.970 22 O -0.370 6.370 23 C 0.067 3.933 24 C 0.079 3.921 25 H 0.078 0.922 26 C -0.149 4.149 27 C -0.155 4.155 28 C 0.043 3.957 29 O -0.363 6.363 30 H 0.260 0.740 31 H 0.035 0.965 32 H -0.003 1.003 33 H 0.092 0.908 34 H 0.040 0.960 35 H 0.143 0.857 36 H 0.141 0.859 37 H 0.194 0.806 38 H 0.031 0.969 39 H 0.092 0.908 40 H 0.371 0.629 41 H 0.055 0.945 42 H 0.054 0.946 43 H 0.061 0.939 44 H 0.057 0.943 45 H 0.083 0.917 46 H 0.079 0.921 47 H 0.075 0.925 48 H 0.078 0.922 49 H 0.083 0.917 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.807 -17.044 9.182 22.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.147 4.147 3 Si 0.725 3.275 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.198 1.198 7 C -0.541 4.541 8 H 0.082 0.918 9 C 0.065 3.935 10 N -0.244 5.244 11 C -0.001 4.001 12 C -0.031 4.031 13 C -0.223 4.223 14 C -0.238 4.238 15 C -0.117 4.117 16 O -0.066 6.066 17 C -0.092 4.092 18 C 0.054 3.946 19 H 0.116 0.884 20 O -0.342 6.342 21 C -0.048 4.048 22 O -0.289 6.289 23 C -0.010 4.010 24 C 0.022 3.978 25 H 0.096 0.904 26 C -0.186 4.186 27 C -0.193 4.193 28 C -0.034 4.034 29 O -0.282 6.282 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.015 0.985 33 H 0.110 0.890 34 H 0.058 0.942 35 H 0.161 0.839 36 H 0.158 0.842 37 H 0.211 0.789 38 H 0.049 0.951 39 H 0.110 0.890 40 H 0.218 0.782 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.102 0.898 46 H 0.098 0.902 47 H 0.094 0.906 48 H 0.096 0.904 49 H 0.101 0.899 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.774 -17.144 8.376 21.912 hybrid contribution -0.206 1.250 1.012 1.622 sum 10.568 -15.894 9.388 21.270 Atomic orbital electron populations 1.69968 1.06036 1.26669 1.51176 1.24991 0.94841 0.99244 0.95591 0.86518 0.79663 0.83173 0.78164 1.20680 1.21434 1.19832 1.21134 0.93575 0.89660 1.49715 0.91763 1.19857 0.89661 0.87257 0.96735 1.62022 1.39747 1.02710 1.19893 1.20537 0.98414 0.95138 0.86014 1.22257 0.86383 0.99857 0.94625 1.21431 1.00680 1.08353 0.91810 1.21721 0.96383 1.07107 0.98620 1.23858 0.99388 1.05147 0.83349 1.84074 1.39951 1.64544 1.17989 1.22590 0.95718 1.00225 0.90644 1.21954 0.86986 0.97487 0.88172 0.88399 1.86601 1.49233 1.41243 1.57105 1.23346 0.90859 0.91177 0.99386 1.88005 1.57017 1.57434 1.26452 1.22485 0.95043 0.97591 0.85903 1.23163 0.86136 0.96165 0.92369 0.90377 1.23103 0.96625 1.01812 0.97095 1.22929 0.96892 1.01200 0.98278 1.23151 0.91676 0.93993 0.94561 1.89062 1.15916 1.51413 1.71791 0.93003 0.94694 0.98546 0.89029 0.94185 0.83871 0.84162 0.78878 0.95072 0.88953 0.78211 0.92729 0.92755 0.92081 0.92514 0.89843 0.90183 0.90578 0.90362 0.89902 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 2 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.50 -14.08 8.56 -34.44 -0.29 -14.37 16 8 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 9 C 0.19 4.93 4.59 -4.98 -0.02 4.91 16 10 N -0.52 -11.02 4.32 -237.52 -1.03 -12.05 16 11 C 0.13 2.36 5.37 -4.98 -0.03 2.34 16 12 C 0.02 0.39 6.13 -35.62 -0.22 0.17 16 13 C -0.20 -3.69 10.81 -39.70 -0.43 -4.12 16 14 C -0.22 -3.61 10.91 -39.70 -0.43 -4.04 16 15 C -0.05 -0.83 12.09 29.41 0.36 -0.47 16 16 O -0.17 -3.48 9.78 5.71 0.06 -3.42 16 17 C 0.04 0.65 4.42 -3.83 -0.02 0.64 16 18 C 0.11 1.76 3.23 -26.73 -0.09 1.67 16 19 H 0.10 1.52 6.10 -51.93 -0.32 1.20 16 20 O -0.54 -9.38 13.25 -40.09 -0.53 -9.91 16 21 C 0.03 0.39 5.57 37.16 0.21 0.59 16 22 O -0.37 -5.19 10.31 -41.88 -0.43 -5.63 16 23 C 0.07 0.71 5.69 37.16 0.21 0.92 16 24 C 0.08 0.79 3.62 -25.68 -0.09 0.70 16 25 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 26 C -0.15 -1.00 6.59 -24.72 -0.16 -1.17 16 27 C -0.16 -0.96 7.01 -25.20 -0.18 -1.13 16 28 C 0.04 0.37 7.69 37.74 0.29 0.66 16 29 O -0.36 -4.52 11.25 -35.23 -0.40 -4.91 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.04 1.00 6.45 -51.93 -0.33 0.67 16 32 H 0.00 -0.09 8.00 -51.93 -0.42 -0.51 16 33 H 0.09 1.46 5.87 -51.93 -0.30 1.16 16 34 H 0.04 0.73 8.05 -51.93 -0.42 0.31 16 35 H 0.14 2.42 8.06 -52.49 -0.42 1.99 16 36 H 0.14 1.89 8.06 -52.49 -0.42 1.46 16 37 H 0.19 2.45 8.06 -52.48 -0.42 2.02 16 38 H 0.03 0.52 8.12 -51.93 -0.42 0.10 16 39 H 0.09 1.76 7.44 -51.93 -0.39 1.37 16 40 H 0.37 5.57 9.05 45.56 0.41 5.98 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.08 0.51 8.06 -51.93 -0.42 0.10 16 47 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 50 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 409.63 15.07 6.17 6.17 Total: -1.00 -34.81 409.63 -9.08 -43.89 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -7.65 Total: 6.45 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: -0.99 Total: -11.26 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: -0.29 Total: -38.16 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -1.30 Total: -23.87 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.81 -9.08 -43.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078321258.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.193 kcal (2) G-P(sol) polarization free energy of solvation -34.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds