Wall clock time and date at job start Tue Mar 31 2020 22:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99780 * 2 1 4 4 H 1.48502 * 109.47238 * 270.00308 * 3 2 1 5 5 H 1.48490 * 109.47318 * 30.00431 * 3 2 1 6 6 H 1.48500 * 109.46954 * 150.00517 * 3 2 1 7 7 C 1.37875 * 120.00158 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00126 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00063 * 359.97438 * 7 2 1 10 10 N 1.46890 * 109.47441 * 185.06391 * 9 7 2 11 11 C 1.46900 * 111.00255 * 199.69228 * 10 9 7 12 12 C 1.50700 * 109.46862 * 71.94157 * 11 10 9 13 13 C 1.34514 * 125.79055 * 89.72205 * 12 11 10 14 14 C 1.41382 * 106.83805 * 179.88704 * 13 12 11 15 15 C 1.34508 * 106.84196 * 0.36885 * 14 13 12 16 16 O 1.34302 * 108.42324 * 359.77426 * 15 14 13 17 17 C 1.46897 * 111.00041 * 75.73704 * 10 9 7 18 18 C 1.53001 * 109.47400 * 190.00207 * 17 10 9 19 19 H 1.09000 * 109.46826 * 304.99806 * 18 17 10 20 20 O 1.42898 * 109.47352 * 65.00015 * 18 17 10 21 21 C 1.53004 * 109.47181 * 185.00072 * 18 17 10 22 22 O 1.42899 * 109.46777 * 174.99648 * 21 18 17 23 23 C 1.42903 * 113.99616 * 179.97438 * 22 21 18 24 24 C 1.53001 * 109.47095 * 179.97438 * 23 22 21 25 25 H 1.08998 * 110.55357 * 307.88575 * 24 23 22 26 26 C 1.54995 * 110.62053 * 185.00176 * 24 23 22 27 27 C 1.54808 * 102.09666 * 204.32178 * 26 24 23 28 28 C 1.54110 * 104.18690 * 20.87964 * 27 26 24 29 29 O 1.43749 * 107.41732 * 1.95530 * 28 27 26 30 30 H 0.97003 * 119.99946 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.46667 * 65.06327 * 9 7 2 32 32 H 1.08995 * 109.47070 * 305.06993 * 9 7 2 33 33 H 1.09007 * 109.47289 * 191.94044 * 11 10 9 34 34 H 1.09000 * 109.46921 * 311.94323 * 11 10 9 35 35 H 1.07995 * 126.58061 * 0.02562 * 13 12 11 36 36 H 1.08002 * 126.57474 * 180.16195 * 14 13 12 37 37 H 1.08010 * 125.78768 * 179.75552 * 15 14 13 38 38 H 1.09004 * 109.46985 * 70.00119 * 17 10 9 39 39 H 1.09005 * 109.47230 * 310.00044 * 17 10 9 40 40 H 0.96701 * 113.99650 * 59.99999 * 20 18 17 41 41 H 1.08994 * 109.46984 * 55.00193 * 21 18 17 42 42 H 1.08993 * 109.47163 * 294.99717 * 21 18 17 43 43 H 1.09003 * 109.46835 * 60.00607 * 23 22 21 44 44 H 1.08999 * 109.47672 * 300.00325 * 23 22 21 45 45 H 1.09000 * 110.90540 * 86.12160 * 26 24 23 46 46 H 1.09002 * 110.93617 * 322.53082 * 26 24 23 47 47 H 1.08999 * 110.48933 * 262.20448 * 27 26 24 48 48 H 1.08997 * 110.60420 * 139.60842 * 27 26 24 49 49 H 1.08998 * 109.87803 * 121.45668 * 28 27 26 50 50 H 1.08999 * 109.87936 * 242.46008 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2010 -3.6130 0.1211 11 6 1.5966 -4.8724 -0.3335 12 6 1.4575 -4.8500 -1.8339 13 6 2.3802 -5.2745 -2.7159 14 6 1.8369 -5.0735 -4.0055 15 6 0.6181 -4.5307 -3.8347 16 8 0.3936 -4.3976 -2.5173 17 6 2.6967 -3.7341 1.4986 18 6 3.8578 -4.7297 1.5371 19 1 3.5376 -5.6781 1.1056 20 8 4.9559 -4.2104 0.7845 21 6 4.2926 -4.9503 2.9874 22 8 5.2969 -5.9657 3.0343 23 6 5.7749 -6.2500 4.3507 24 6 6.8400 -7.3462 4.2809 25 1 6.4667 -8.2078 3.7274 26 6 7.2873 -7.7642 5.7048 27 6 8.7037 -8.3328 5.4461 28 6 9.1194 -7.7123 4.0981 29 8 8.0540 -6.8438 3.6774 30 1 -0.4850 0.8401 0.0004 31 1 0.6939 -2.5969 -0.9322 32 1 0.5584 -2.5188 0.8408 33 1 2.2328 -5.7075 -0.0400 34 1 0.6126 -4.9880 0.1210 35 1 3.3490 -5.6911 -2.4834 36 1 2.3110 -5.3075 -4.9473 37 1 -0.0642 -4.2492 -4.6234 38 1 1.8930 -4.0880 2.1442 39 1 3.0412 -2.7606 1.8476 40 1 5.2933 -3.3658 1.1128 41 1 3.4331 -5.2618 3.5809 42 1 4.6957 -4.0216 3.3911 43 1 4.9463 -6.5883 4.9729 44 1 6.2089 -5.3482 4.7824 45 1 6.6279 -8.5319 6.1099 46 1 7.3300 -6.9008 6.3688 47 1 8.6708 -9.4197 5.3718 48 1 9.3902 -8.0259 6.2352 49 1 10.0382 -7.1390 4.2216 50 1 9.2701 -8.4990 3.3588 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078321258.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:43 Heat of formation + Delta-G solvation = -144.259951 kcal Electronic energy + Delta-G solvation = -29768.037949 eV Core-core repulsion = 25568.412926 eV Total energy + Delta-G solvation = -4199.625023 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.36102 -40.47747 -39.72613 -38.30952 -36.81938 -34.74223 -33.80311 -33.13033 -32.25142 -31.60851 -30.81901 -28.84808 -27.10572 -26.11344 -25.41888 -23.12449 -22.69501 -22.52354 -22.22114 -21.99322 -21.05124 -18.61051 -18.25509 -18.06865 -17.75598 -17.41415 -17.10032 -16.82980 -16.70718 -16.51650 -16.28894 -15.86834 -15.67890 -15.36141 -15.23958 -14.57663 -14.53552 -14.34324 -14.04181 -13.73491 -13.60083 -13.42435 -13.16710 -13.10635 -13.01390 -12.86654 -12.67986 -12.65407 -12.57666 -12.34805 -12.20813 -12.12388 -11.99473 -11.69914 -11.53646 -11.27035 -10.83408 -10.72267 -10.62495 -10.60573 -10.55235 -9.32264 -9.02403 -8.17965 -6.27926 0.89978 1.40119 1.42125 1.52669 1.81095 2.25518 2.39928 2.46652 2.91489 3.13990 3.32127 3.64222 3.66607 3.81937 3.86403 3.98875 4.00180 4.08403 4.15015 4.17892 4.21043 4.25136 4.33975 4.39272 4.41896 4.49431 4.51818 4.53098 4.55368 4.58005 4.78696 4.83114 4.91238 4.93520 4.99406 5.06689 5.09132 5.10692 5.16676 5.20917 5.28369 5.30682 5.66572 5.74639 5.97344 6.06855 6.19910 6.30813 6.39086 6.52332 6.87458 6.95073 7.41177 8.92211 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.009982 B = 0.002646 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2804.482885 B =10578.738481 C =12491.637144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.002 3.998 3 Si 0.966 3.034 4 H -0.279 1.279 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.514 4.514 8 H 0.062 0.938 9 C 0.209 3.791 10 N -0.528 5.528 11 C 0.128 3.872 12 C -0.016 4.016 13 C -0.204 4.204 14 C -0.222 4.222 15 C -0.056 4.056 16 O -0.202 6.202 17 C 0.040 3.960 18 C 0.124 3.876 19 H 0.099 0.901 20 O -0.559 6.559 21 C 0.037 3.963 22 O -0.396 6.396 23 C 0.062 3.938 24 C 0.071 3.929 25 H 0.072 0.928 26 C -0.141 4.141 27 C -0.150 4.150 28 C 0.033 3.967 29 O -0.402 6.402 30 H 0.263 0.737 31 H 0.003 0.997 32 H -0.031 1.031 33 H 0.119 0.881 34 H 0.037 0.963 35 H 0.154 0.846 36 H 0.173 0.827 37 H 0.230 0.770 38 H 0.044 0.956 39 H 0.076 0.924 40 H 0.379 0.621 41 H 0.076 0.924 42 H 0.060 0.940 43 H 0.087 0.913 44 H 0.055 0.945 45 H 0.103 0.897 46 H 0.084 0.916 47 H 0.090 0.910 48 H 0.092 0.908 49 H 0.088 0.912 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.232 -17.810 9.977 23.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.196 4.196 3 Si 0.790 3.210 4 H -0.205 1.205 5 H -0.207 1.207 6 H -0.184 1.184 7 C -0.553 4.553 8 H 0.080 0.920 9 C 0.083 3.917 10 N -0.252 5.252 11 C 0.001 3.999 12 C -0.066 4.066 13 C -0.224 4.224 14 C -0.241 4.241 15 C -0.123 4.123 16 O -0.099 6.099 17 C -0.088 4.088 18 C 0.065 3.935 19 H 0.116 0.884 20 O -0.364 6.364 21 C -0.040 4.040 22 O -0.316 6.316 23 C -0.015 4.015 24 C 0.014 3.986 25 H 0.090 0.910 26 C -0.179 4.179 27 C -0.187 4.187 28 C -0.043 4.043 29 O -0.322 6.322 30 H 0.072 0.928 31 H 0.021 0.979 32 H -0.013 1.013 33 H 0.137 0.863 34 H 0.055 0.945 35 H 0.172 0.828 36 H 0.191 0.809 37 H 0.247 0.753 38 H 0.062 0.938 39 H 0.095 0.905 40 H 0.227 0.773 41 H 0.094 0.906 42 H 0.079 0.921 43 H 0.105 0.895 44 H 0.074 0.926 45 H 0.122 0.878 46 H 0.102 0.898 47 H 0.108 0.892 48 H 0.110 0.890 49 H 0.106 0.894 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 12.224 -17.935 9.189 23.570 hybrid contribution -0.636 1.417 0.703 1.705 sum 11.588 -16.519 9.892 22.473 Atomic orbital electron populations 1.70098 1.07687 1.27703 1.52068 1.25877 0.95673 1.03006 0.95033 0.85438 0.78781 0.78531 0.78209 1.20509 1.20742 1.18446 1.21412 0.93550 0.90826 1.49500 0.91998 1.19420 0.89607 0.88783 0.93891 1.61908 1.38416 1.02739 1.22176 1.20630 0.98704 0.94563 0.85999 1.22523 0.87129 1.01667 0.95251 1.21729 1.00695 1.07494 0.92516 1.22126 0.96207 1.06502 0.99231 1.24718 1.00471 1.04312 0.82769 1.84053 1.40780 1.65323 1.19701 1.22596 0.96909 1.00375 0.88955 1.21839 0.85500 0.96294 0.89917 0.88374 1.86558 1.49765 1.41931 1.58174 1.23191 0.91690 0.91643 0.97512 1.87957 1.57328 1.57553 1.28769 1.22723 0.96072 0.97956 0.84724 1.23330 0.85432 0.95630 0.94230 0.90975 1.23104 0.97163 1.02571 0.95036 1.22935 0.96732 1.01879 0.97159 1.23355 0.91106 0.93883 0.96003 1.89015 1.17480 1.52870 1.72874 0.92835 0.97935 1.01279 0.86301 0.94484 0.82838 0.80935 0.75349 0.93827 0.90518 0.77297 0.90576 0.92140 0.89518 0.92626 0.87821 0.89760 0.89184 0.88960 0.89368 0.92258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.04 13.29 21.45 0.28 -56.76 16 2 C 0.00 0.11 5.46 84.65 0.46 0.57 16 3 Si 0.97 44.89 29.54 68.60 2.03 46.92 16 4 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 6 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 7 C -0.51 -29.46 8.56 25.60 0.22 -29.24 16 8 H 0.06 3.50 7.81 -2.91 -0.02 3.47 16 9 C 0.21 11.31 4.59 85.56 0.39 11.71 16 10 N -0.53 -22.91 4.32 -905.38 -3.91 -26.82 16 11 C 0.13 4.86 5.37 85.56 0.46 5.32 16 12 C -0.02 -0.62 6.13 24.83 0.15 -0.47 16 13 C -0.20 -7.32 10.81 22.19 0.24 -7.08 16 14 C -0.22 -6.98 10.91 22.19 0.24 -6.74 16 15 C -0.06 -1.83 12.09 66.97 0.81 -1.02 16 16 O -0.20 -8.43 9.78 -2.49 -0.02 -8.46 16 17 C 0.04 1.42 4.42 86.30 0.38 1.80 16 18 C 0.12 3.75 3.23 30.60 0.10 3.85 16 19 H 0.10 2.95 6.10 -2.39 -0.01 2.93 16 20 O -0.56 -19.36 13.25 -144.34 -1.91 -21.27 16 21 C 0.04 0.90 5.57 71.98 0.40 1.31 16 22 O -0.40 -10.71 10.31 -142.62 -1.47 -12.18 16 23 C 0.06 1.21 5.69 71.98 0.41 1.62 16 24 C 0.07 1.34 3.62 31.28 0.11 1.45 16 25 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 26 C -0.14 -1.58 6.59 31.89 0.21 -1.37 16 27 C -0.15 -1.51 7.01 31.59 0.22 -1.29 16 28 C 0.03 0.53 7.69 72.36 0.56 1.09 16 29 O -0.40 -9.90 11.25 -148.98 -1.68 -11.58 16 30 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 31 H 0.00 0.15 6.45 -2.39 -0.02 0.14 16 32 H -0.03 -1.77 8.00 -2.39 -0.02 -1.79 16 33 H 0.12 3.75 5.87 -2.38 -0.01 3.73 16 34 H 0.04 1.40 8.05 -2.39 -0.02 1.38 16 35 H 0.15 5.04 8.06 -2.91 -0.02 5.01 16 36 H 0.17 4.16 8.06 -2.91 -0.02 4.13 16 37 H 0.23 5.39 8.06 -2.91 -0.02 5.37 16 38 H 0.04 1.44 8.12 -2.38 -0.02 1.42 16 39 H 0.08 2.96 7.44 -2.38 -0.02 2.94 16 40 H 0.38 11.39 9.05 -74.06 -0.67 10.72 16 41 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.08 0.88 8.06 -2.39 -0.02 0.86 16 47 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 48 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 49 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 50 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -77.16 409.63 -1.06 -78.21 By element: Atomic # 1 Polarization: 30.17 SS G_CDS: 0.25 Total: 30.42 kcal Atomic # 6 Polarization: -23.86 SS G_CDS: 5.37 Total: -18.49 kcal Atomic # 7 Polarization: -79.95 SS G_CDS: -3.63 Total: -83.58 kcal Atomic # 8 Polarization: -48.40 SS G_CDS: -5.08 Total: -53.49 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -77.16 -1.06 -78.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078321258.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.046 kcal (2) G-P(sol) polarization free energy of solvation -77.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds