Wall clock time and date at job start Tue Mar 31 2020 22:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31782 * 122.75217 * 2 1 4 4 C 1.29022 * 117.12528 * 179.97438 * 3 2 1 5 5 S 1.70984 * 110.16708 * 359.73182 * 4 3 2 6 6 C 1.33642 * 122.74628 * 180.02562 * 2 1 3 7 7 C 1.50701 * 126.03997 * 359.97438 * 6 2 1 8 8 C 1.53005 * 109.46990 * 89.99961 * 7 6 2 9 9 N 1.46895 * 109.46879 * 180.02562 * 8 7 6 10 10 C 1.46896 * 111.00551 * 66.04571 * 9 8 7 11 11 C 1.50699 * 109.46923 * 62.32624 * 10 9 8 12 12 H 1.08000 * 120.00002 * 4.92571 * 11 10 9 13 13 C 1.37879 * 120.00213 * 184.92385 * 11 10 9 14 14 N 1.31512 * 119.99900 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00238 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47046 * 90.00099 * 15 13 11 17 17 H 1.48498 * 109.46928 * 210.00378 * 15 13 11 18 18 H 1.48503 * 109.47037 * 330.00248 * 15 13 11 19 19 C 1.46903 * 110.99861 * 190.00369 * 9 8 7 20 20 C 1.52994 * 109.47367 * 163.57411 * 19 9 8 21 21 N 1.46897 * 109.47275 * 181.79382 * 20 19 9 22 22 C 1.47015 * 111.00144 * 293.63532 * 21 20 19 23 23 C 1.53092 * 109.26081 * 177.60784 * 22 21 20 24 24 O 1.43013 * 109.26030 * 56.85045 * 23 22 21 25 25 C 1.43014 * 113.73504 * 301.32843 * 24 23 22 26 26 C 1.47016 * 111.00053 * 170.00068 * 21 20 19 27 27 H 1.09006 * 109.47081 * 270.00175 * 1 2 3 28 28 H 1.09003 * 109.46835 * 29.99360 * 1 2 3 29 29 H 1.08996 * 109.47411 * 149.99613 * 1 2 3 30 30 H 1.07996 * 124.92057 * 179.97438 * 4 3 2 31 31 H 1.08998 * 109.46906 * 330.00237 * 7 6 2 32 32 H 1.08997 * 109.47287 * 210.00152 * 7 6 2 33 33 H 1.08997 * 109.46741 * 300.00129 * 8 7 6 34 34 H 1.09005 * 109.46926 * 59.99974 * 8 7 6 35 35 H 1.08999 * 109.47339 * 182.32716 * 10 9 8 36 36 H 1.08997 * 109.46968 * 302.32841 * 10 9 8 37 37 H 0.97000 * 120.00347 * 180.02562 * 14 13 11 38 38 H 1.09006 * 109.46557 * 283.57348 * 19 9 8 39 39 H 1.08999 * 109.47129 * 43.57226 * 19 9 8 40 40 H 1.09000 * 109.47111 * 301.79464 * 20 19 9 41 41 H 1.09005 * 109.47151 * 61.79209 * 20 19 9 42 42 H 1.09010 * 109.50510 * 297.54119 * 22 21 20 43 43 H 1.08998 * 109.50812 * 57.66619 * 22 21 20 44 44 H 1.09000 * 109.51000 * 296.90828 * 23 22 21 45 45 H 1.09004 * 109.54352 * 176.80523 * 23 22 21 46 46 H 1.09001 * 109.51152 * 298.73619 * 25 24 23 47 47 H 1.09001 * 109.54315 * 178.62346 * 25 24 23 48 48 H 1.08998 * 109.50696 * 302.32413 * 26 21 20 49 49 H 1.08992 * 109.50831 * 62.41423 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2200 1.1083 0.0000 4 6 3.5040 0.9818 0.0005 5 16 3.9332 -0.6733 0.0086 6 6 2.2299 -1.1240 -0.0005 7 6 1.6846 -2.5289 -0.0006 8 6 1.4995 -3.0040 -1.4432 9 7 0.9674 -4.3732 -1.4432 10 6 -0.3913 -4.4101 -0.8861 11 6 -1.3107 -3.5851 -1.7493 12 1 -0.9434 -3.1490 -2.6665 13 6 -2.6208 -3.3868 -1.3680 14 7 -3.0680 -3.9173 -0.2508 15 14 -3.7606 -2.3647 -2.4383 16 1 -4.4405 -3.2468 -3.4206 17 1 -4.7768 -1.6991 -1.5843 18 1 -2.9705 -1.3356 -3.1609 19 6 0.9984 -4.9500 -2.7939 20 6 0.8356 -6.4686 -2.7039 21 7 0.9096 -7.0497 -4.0510 22 6 -0.2369 -6.6296 -4.8698 23 6 -0.0893 -7.2076 -6.2797 24 8 0.0240 -8.6308 -6.1967 25 6 1.1306 -9.0751 -5.4072 26 6 0.9954 -8.5160 -3.9883 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8901 -0.5138 29 1 -0.3634 -0.8899 -0.5139 30 1 4.2060 1.8024 0.0002 31 1 0.7236 -2.5457 0.5136 32 1 2.3829 -3.1898 0.5129 33 1 0.8011 -2.3431 -1.9565 34 1 2.4605 -2.9872 -1.9573 35 1 -0.7454 -5.4407 -0.8597 36 1 -0.3805 -4.0037 0.1252 37 1 -3.9898 -3.7782 0.0172 38 1 0.1846 -4.5318 -3.3863 39 1 1.9512 -4.7142 -3.2679 40 1 1.6313 -6.8833 -2.0851 41 1 -0.1311 -6.7046 -2.2590 42 1 -1.1594 -6.9975 -4.4204 43 1 -0.2664 -5.5414 -4.9237 44 1 0.8050 -6.7980 -6.7493 45 1 -0.9647 -6.9463 -6.8744 46 1 2.0605 -8.7198 -5.8512 47 1 1.1379 -10.1644 -5.3699 48 1 1.8656 -8.8048 -3.3988 49 1 0.0931 -8.9139 -3.5241 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081515474.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:45 Heat of formation + Delta-G solvation = 5.111770 kcal Electronic energy + Delta-G solvation = -28032.756065 eV Core-core repulsion = 24314.653908 eV Total energy + Delta-G solvation = -3718.102157 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.69511 -39.43217 -37.43054 -35.48032 -33.24882 -32.43642 -31.12302 -30.27123 -28.96628 -27.08570 -26.39505 -24.96113 -24.19073 -23.87378 -23.26181 -21.39629 -20.20208 -19.50218 -18.51937 -17.85875 -16.58622 -16.35649 -16.05792 -15.58664 -15.29376 -14.97735 -14.84715 -14.65795 -14.56091 -14.25475 -14.09042 -13.48018 -13.22755 -13.16316 -12.94188 -12.35739 -12.23845 -12.21188 -12.08960 -11.85018 -11.67669 -11.54823 -11.29828 -11.16919 -11.05174 -10.96090 -10.75966 -10.55876 -10.38199 -10.25471 -10.16619 -10.00274 -9.62795 -9.56634 -9.46152 -9.03315 -8.52671 -8.41050 -8.14989 -7.26716 -6.11438 -4.20304 0.91983 1.55521 1.93435 3.01080 3.20381 3.29126 3.31067 3.82515 3.99987 4.32806 4.42235 4.87182 4.98666 5.13891 5.14828 5.19425 5.23852 5.29995 5.37896 5.40478 5.50927 5.60123 5.65206 5.69773 5.78184 5.83960 5.87152 5.94243 6.01718 6.06013 6.09183 6.11223 6.21089 6.24738 6.33135 6.47713 6.56569 6.62624 6.67671 6.82203 7.09131 7.12991 7.24689 7.27048 7.44592 7.81171 7.92073 7.96599 8.16387 8.20626 8.89395 9.46615 10.93246 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009702 B = 0.003498 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2885.360317 B = 8002.754443 C =10007.456549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.056 3.944 3 N -0.466 5.466 4 C 0.004 3.996 5 S 0.095 5.905 6 C -0.190 4.190 7 C -0.038 4.038 8 C 0.075 3.925 9 N -0.543 5.543 10 C 0.183 3.817 11 C -0.547 4.547 12 H 0.056 0.944 13 C 0.070 3.930 14 N -0.887 5.887 15 Si 0.879 3.121 16 H -0.281 1.281 17 H -0.285 1.285 18 H -0.273 1.273 19 C 0.067 3.933 20 C 0.065 3.935 21 N -0.537 5.537 22 C 0.015 3.985 23 C 0.065 3.935 24 O -0.390 6.390 25 C 0.065 3.935 26 C 0.018 3.982 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.193 0.807 31 H 0.098 0.902 32 H 0.074 0.926 33 H 0.048 0.952 34 H 0.050 0.950 35 H 0.027 0.973 36 H 0.037 0.963 37 H 0.263 0.737 38 H 0.048 0.952 39 H 0.056 0.944 40 H 0.073 0.927 41 H 0.044 0.956 42 H 0.045 0.955 43 H 0.092 0.908 44 H 0.056 0.944 45 H 0.095 0.905 46 H 0.057 0.943 47 H 0.093 0.907 48 H 0.083 0.917 49 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.888 -1.212 -3.872 12.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.075 4.075 3 N -0.179 5.179 4 C -0.294 4.294 5 S 0.347 5.653 6 C -0.311 4.311 7 C -0.079 4.079 8 C -0.055 4.055 9 N -0.267 5.267 10 C 0.057 3.943 11 C -0.586 4.586 12 H 0.074 0.926 13 C -0.133 4.133 14 N -0.526 5.526 15 Si 0.707 3.293 16 H -0.207 1.207 17 H -0.210 1.210 18 H -0.198 1.198 19 C -0.062 4.062 20 C -0.062 4.062 21 N -0.263 5.263 22 C -0.113 4.113 23 C -0.012 4.012 24 O -0.308 6.308 25 C -0.012 4.012 26 C -0.110 4.110 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.114 0.886 30 H 0.210 0.790 31 H 0.116 0.884 32 H 0.093 0.907 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.045 0.955 36 H 0.055 0.945 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.092 0.908 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.110 0.890 44 H 0.075 0.925 45 H 0.113 0.887 46 H 0.075 0.925 47 H 0.111 0.889 48 H 0.101 0.899 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 13.079 -1.420 -3.745 13.679 hybrid contribution -2.648 1.186 -0.448 2.935 sum 10.432 -0.234 -4.193 11.245 Atomic orbital electron populations 1.20469 0.86463 1.04371 1.03015 1.20332 0.98496 0.85963 1.02684 1.66166 1.04980 1.32036 1.14756 1.28122 0.95280 0.99746 1.06260 1.83884 1.08554 1.03835 1.68992 1.25876 0.93840 1.01376 1.09997 1.20105 1.01802 0.86932 0.99022 1.21798 0.98296 0.90930 0.94439 1.62375 1.26127 1.17899 1.20319 1.19835 0.81959 0.96957 0.95532 1.21645 0.96047 1.32975 1.07961 0.92606 1.24887 0.98013 0.95540 0.94832 1.69924 1.16292 1.44253 1.22084 0.86794 0.81083 0.80720 0.80716 1.20687 1.21032 1.19809 1.21825 1.00238 0.93062 0.91075 1.22033 1.01089 0.95634 0.87464 1.62186 1.41742 1.07580 1.14809 1.22816 0.92524 1.01957 0.94000 1.22687 1.01880 0.80614 0.96046 1.87951 1.49636 1.22026 1.71220 1.22633 0.89621 0.98987 0.89928 1.22734 1.01677 0.88788 0.97818 0.90972 0.91335 0.88616 0.78999 0.88367 0.90699 0.93399 0.93115 0.95503 0.94478 0.92762 0.93349 0.92530 0.90835 0.93804 0.93669 0.89011 0.92523 0.88716 0.92520 0.88870 0.89854 0.94068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.41 9.82 36.01 0.35 -1.06 16 2 C 0.06 0.93 6.74 -84.22 -0.57 0.36 16 3 N -0.47 -7.45 10.53 -11.90 -0.13 -7.58 16 4 C 0.00 0.05 12.23 51.58 0.63 0.68 16 5 S 0.09 1.19 23.22 -107.50 -2.50 -1.30 16 6 C -0.19 -2.99 5.84 -35.92 -0.21 -3.20 16 7 C -0.04 -0.64 5.07 -27.88 -0.14 -0.78 16 8 C 0.07 1.34 4.75 -3.82 -0.02 1.32 16 9 N -0.54 -10.49 4.66 -236.08 -1.10 -11.59 16 10 C 0.18 4.22 4.77 -4.98 -0.02 4.20 16 11 C -0.55 -13.60 7.33 -34.44 -0.25 -13.85 16 12 H 0.06 1.40 5.96 -52.49 -0.31 1.09 16 13 C 0.07 1.83 5.46 -17.82 -0.10 1.74 16 14 N -0.89 -24.41 13.29 55.43 0.74 -23.67 16 15 Si 0.88 20.35 29.54 -169.99 -5.02 15.33 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 19 C 0.07 1.20 4.70 -3.83 -0.02 1.18 16 20 C 0.07 1.10 4.98 -3.83 -0.02 1.08 16 21 N -0.54 -8.02 4.73 -234.31 -1.11 -9.13 16 22 C 0.02 0.23 5.44 -3.71 -0.02 0.21 16 23 C 0.06 0.83 7.01 37.20 0.26 1.09 16 24 O -0.39 -5.40 10.83 -35.23 -0.38 -5.78 16 25 C 0.07 0.75 7.01 37.21 0.26 1.01 16 26 C 0.02 0.24 5.65 -3.71 -0.02 0.22 16 27 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 28 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.10 1.80 7.18 -51.93 -0.37 1.43 16 30 H 0.19 1.70 8.06 -52.49 -0.42 1.28 16 31 H 0.10 1.85 5.79 -51.93 -0.30 1.55 16 32 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.05 0.97 6.38 -51.93 -0.33 0.64 16 34 H 0.05 0.85 7.86 -51.93 -0.41 0.44 16 35 H 0.03 0.68 6.70 -51.93 -0.35 0.33 16 36 H 0.04 0.92 6.37 -51.93 -0.33 0.59 16 37 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 38 H 0.05 0.97 4.64 -51.93 -0.24 0.73 16 39 H 0.06 0.96 7.80 -51.93 -0.41 0.56 16 40 H 0.07 1.18 8.04 -51.93 -0.42 0.77 16 41 H 0.04 0.85 6.80 -51.93 -0.35 0.49 16 42 H 0.05 0.76 8.14 -51.92 -0.42 0.33 16 43 H 0.09 1.43 6.42 -51.93 -0.33 1.10 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 46 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 47 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.08 0.94 8.09 -51.93 -0.42 0.52 16 49 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 392.57 15.07 5.92 5.92 Total: -1.00 -28.10 392.57 -11.40 -39.50 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -7.94 Total: 4.12 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: 0.12 Total: -5.80 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: -1.60 Total: -51.97 kcal Atomic # 8 Polarization: -5.40 SS G_CDS: -0.38 Total: -5.78 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 16 Polarization: 1.19 SS G_CDS: -2.50 Total: -1.30 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -28.10 -11.40 -39.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081515474.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.609 kcal (2) G-P(sol) polarization free energy of solvation -28.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds