Wall clock time and date at job start Tue Mar 31 2020 22:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31782 * 122.75217 * 2 1 4 4 C 1.29022 * 117.12528 * 179.97438 * 3 2 1 5 5 S 1.70984 * 110.16708 * 359.73182 * 4 3 2 6 6 C 1.33642 * 122.74628 * 180.02562 * 2 1 3 7 7 C 1.50701 * 126.03997 * 359.97438 * 6 2 1 8 8 C 1.53005 * 109.46990 * 89.99961 * 7 6 2 9 9 N 1.46895 * 109.46879 * 180.02562 * 8 7 6 10 10 C 1.46896 * 111.00551 * 66.04571 * 9 8 7 11 11 C 1.50699 * 109.46923 * 62.32624 * 10 9 8 12 12 H 1.08000 * 120.00002 * 4.92571 * 11 10 9 13 13 C 1.37879 * 120.00213 * 184.92385 * 11 10 9 14 14 N 1.31512 * 119.99900 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00238 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47046 * 90.00099 * 15 13 11 17 17 H 1.48498 * 109.46928 * 210.00378 * 15 13 11 18 18 H 1.48503 * 109.47037 * 330.00248 * 15 13 11 19 19 C 1.46903 * 110.99861 * 190.00369 * 9 8 7 20 20 C 1.52994 * 109.47367 * 163.57411 * 19 9 8 21 21 N 1.46897 * 109.47275 * 181.79382 * 20 19 9 22 22 C 1.47015 * 111.00144 * 293.63532 * 21 20 19 23 23 C 1.53092 * 109.26081 * 177.60784 * 22 21 20 24 24 O 1.43013 * 109.26030 * 56.85045 * 23 22 21 25 25 C 1.43014 * 113.73504 * 301.32843 * 24 23 22 26 26 C 1.47016 * 111.00053 * 170.00068 * 21 20 19 27 27 H 1.09006 * 109.47081 * 270.00175 * 1 2 3 28 28 H 1.09003 * 109.46835 * 29.99360 * 1 2 3 29 29 H 1.08996 * 109.47411 * 149.99613 * 1 2 3 30 30 H 1.07996 * 124.92057 * 179.97438 * 4 3 2 31 31 H 1.08998 * 109.46906 * 330.00237 * 7 6 2 32 32 H 1.08997 * 109.47287 * 210.00152 * 7 6 2 33 33 H 1.08997 * 109.46741 * 300.00129 * 8 7 6 34 34 H 1.09005 * 109.46926 * 59.99974 * 8 7 6 35 35 H 1.08999 * 109.47339 * 182.32716 * 10 9 8 36 36 H 1.08997 * 109.46968 * 302.32841 * 10 9 8 37 37 H 0.97000 * 120.00347 * 180.02562 * 14 13 11 38 38 H 1.09006 * 109.46557 * 283.57348 * 19 9 8 39 39 H 1.08999 * 109.47129 * 43.57226 * 19 9 8 40 40 H 1.09000 * 109.47111 * 301.79464 * 20 19 9 41 41 H 1.09005 * 109.47151 * 61.79209 * 20 19 9 42 42 H 1.09010 * 109.50510 * 297.54119 * 22 21 20 43 43 H 1.08998 * 109.50812 * 57.66619 * 22 21 20 44 44 H 1.09000 * 109.51000 * 296.90828 * 23 22 21 45 45 H 1.09004 * 109.54352 * 176.80523 * 23 22 21 46 46 H 1.09001 * 109.51152 * 298.73619 * 25 24 23 47 47 H 1.09001 * 109.54315 * 178.62346 * 25 24 23 48 48 H 1.08998 * 109.50696 * 302.32413 * 26 21 20 49 49 H 1.08992 * 109.50831 * 62.41423 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2200 1.1083 0.0000 4 6 3.5040 0.9818 0.0005 5 16 3.9332 -0.6733 0.0086 6 6 2.2299 -1.1240 -0.0005 7 6 1.6846 -2.5289 -0.0006 8 6 1.4995 -3.0040 -1.4432 9 7 0.9674 -4.3732 -1.4432 10 6 -0.3913 -4.4101 -0.8861 11 6 -1.3107 -3.5851 -1.7493 12 1 -0.9434 -3.1490 -2.6665 13 6 -2.6208 -3.3868 -1.3680 14 7 -3.0680 -3.9173 -0.2508 15 14 -3.7606 -2.3647 -2.4383 16 1 -4.4405 -3.2468 -3.4206 17 1 -4.7768 -1.6991 -1.5843 18 1 -2.9705 -1.3356 -3.1609 19 6 0.9984 -4.9500 -2.7939 20 6 0.8356 -6.4686 -2.7039 21 7 0.9096 -7.0497 -4.0510 22 6 -0.2369 -6.6296 -4.8698 23 6 -0.0893 -7.2076 -6.2797 24 8 0.0240 -8.6308 -6.1967 25 6 1.1306 -9.0751 -5.4072 26 6 0.9954 -8.5160 -3.9883 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8901 -0.5138 29 1 -0.3634 -0.8899 -0.5139 30 1 4.2060 1.8024 0.0002 31 1 0.7236 -2.5457 0.5136 32 1 2.3829 -3.1898 0.5129 33 1 0.8011 -2.3431 -1.9565 34 1 2.4605 -2.9872 -1.9573 35 1 -0.7454 -5.4407 -0.8597 36 1 -0.3805 -4.0037 0.1252 37 1 -3.9898 -3.7782 0.0172 38 1 0.1846 -4.5318 -3.3863 39 1 1.9512 -4.7142 -3.2679 40 1 1.6313 -6.8833 -2.0851 41 1 -0.1311 -6.7046 -2.2590 42 1 -1.1594 -6.9975 -4.4204 43 1 -0.2664 -5.5414 -4.9237 44 1 0.8050 -6.7980 -6.7493 45 1 -0.9647 -6.9463 -6.8744 46 1 2.0605 -8.7198 -5.8512 47 1 1.1379 -10.1644 -5.3699 48 1 1.8656 -8.8048 -3.3988 49 1 0.0931 -8.9139 -3.5241 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081515474.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:44 Heat of formation + Delta-G solvation = -14.125410 kcal Electronic energy + Delta-G solvation = -28033.590252 eV Core-core repulsion = 24314.653908 eV Total energy + Delta-G solvation = -3718.936344 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.88149 -40.55841 -38.96083 -36.71272 -34.83702 -34.15284 -32.17840 -31.58418 -30.41369 -28.84195 -27.65012 -26.30197 -25.60339 -24.97976 -24.78425 -22.71525 -21.42280 -21.11998 -19.74516 -18.99039 -18.40720 -17.68784 -17.17029 -16.87699 -16.81233 -16.26046 -16.01039 -15.94926 -15.87605 -15.65812 -15.50779 -14.85373 -14.59153 -14.47692 -14.38291 -13.93415 -13.60987 -13.49313 -13.40382 -13.20349 -13.10275 -13.02622 -12.77284 -12.74059 -12.38499 -12.34950 -12.30197 -12.05418 -11.94066 -11.83059 -11.69723 -11.47863 -11.35421 -10.66463 -10.59184 -10.54928 -10.13236 -9.59420 -9.44435 -8.99713 -8.13408 -6.29346 -0.19058 0.47264 0.83127 1.32303 1.36107 1.43283 1.82622 2.36164 2.65538 2.95787 3.13212 3.34930 3.46706 3.91497 4.00133 4.04080 4.05603 4.15700 4.19448 4.21144 4.31712 4.37324 4.38455 4.48274 4.55289 4.58084 4.65915 4.69684 4.71118 4.77476 4.85073 4.88102 4.93147 4.95655 4.96828 5.06576 5.11873 5.17393 5.23200 5.30822 5.40472 5.41981 5.78517 5.91582 5.98674 6.08975 6.17794 6.27926 6.52357 6.80032 6.90038 7.40570 8.88714 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009702 B = 0.003498 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2885.360317 B = 8002.754443 C =10007.456549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.043 3.957 3 N -0.499 5.499 4 C 0.016 3.984 5 S 0.160 5.840 6 C -0.220 4.220 7 C -0.026 4.026 8 C 0.081 3.919 9 N -0.538 5.538 10 C 0.202 3.798 11 C -0.540 4.540 12 H 0.052 0.948 13 C 0.025 3.975 14 N -0.921 5.921 15 Si 0.934 3.066 16 H -0.279 1.279 17 H -0.283 1.283 18 H -0.268 1.268 19 C 0.072 3.928 20 C 0.077 3.923 21 N -0.533 5.533 22 C 0.016 3.984 23 C 0.070 3.930 24 O -0.406 6.406 25 C 0.066 3.934 26 C 0.015 3.985 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.235 0.765 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.022 0.978 34 H 0.073 0.927 35 H 0.000 1.000 36 H 0.017 0.983 37 H 0.262 0.738 38 H 0.026 0.974 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.009 0.991 42 H 0.018 0.982 43 H 0.082 0.918 44 H 0.071 0.929 45 H 0.108 0.892 46 H 0.070 0.930 47 H 0.118 0.882 48 H 0.103 0.897 49 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.727 -0.763 -5.136 15.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.088 4.088 3 N -0.213 5.213 4 C -0.282 4.282 5 S 0.413 5.587 6 C -0.342 4.342 7 C -0.066 4.066 8 C -0.048 4.048 9 N -0.261 5.261 10 C 0.075 3.925 11 C -0.579 4.579 12 H 0.070 0.930 13 C -0.175 4.175 14 N -0.561 5.561 15 Si 0.760 3.240 16 H -0.205 1.205 17 H -0.209 1.209 18 H -0.193 1.193 19 C -0.056 4.056 20 C -0.051 4.051 21 N -0.258 5.258 22 C -0.113 4.113 23 C -0.006 4.006 24 O -0.325 6.325 25 C -0.011 4.011 26 C -0.113 4.113 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.251 0.749 31 H 0.086 0.914 32 H 0.104 0.896 33 H 0.040 0.960 34 H 0.091 0.909 35 H 0.018 0.982 36 H 0.035 0.965 37 H 0.071 0.929 38 H 0.044 0.956 39 H 0.094 0.906 40 H 0.103 0.897 41 H 0.027 0.973 42 H 0.037 0.963 43 H 0.100 0.900 44 H 0.089 0.911 45 H 0.126 0.874 46 H 0.088 0.912 47 H 0.136 0.864 48 H 0.121 0.879 49 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 15.942 -0.982 -5.026 16.744 hybrid contribution -3.383 1.054 -0.042 3.544 sum 12.558 0.072 -5.068 13.543 Atomic orbital electron populations 1.20311 0.87749 1.03006 1.02712 1.20278 0.98264 0.86866 1.03363 1.66186 1.06412 1.31803 1.16925 1.28887 0.94854 1.01348 1.03076 1.83619 1.04680 1.02798 1.67563 1.25780 0.96624 1.00348 1.11403 1.19848 1.00739 0.88251 0.97790 1.21788 0.98331 0.89263 0.95416 1.62345 1.23552 1.19033 1.21186 1.19434 0.83751 0.94706 0.94567 1.21819 0.96286 1.32204 1.07635 0.92962 1.25536 0.99493 0.96644 0.95840 1.70030 1.16569 1.45855 1.23631 0.85924 0.79376 0.79457 0.79255 1.20458 1.20857 1.19262 1.21815 1.00256 0.93679 0.89866 1.21852 0.99517 0.95018 0.88702 1.62243 1.41217 1.09076 1.13296 1.22811 0.91487 1.01461 0.95526 1.22703 1.03224 0.80337 0.94368 1.87936 1.50738 1.22255 1.71536 1.22818 0.89439 1.00428 0.88407 1.22885 1.01823 0.87149 0.99415 0.90854 0.91033 0.91421 0.74932 0.91440 0.89619 0.95980 0.90897 0.98163 0.96466 0.92855 0.95593 0.90561 0.89694 0.97303 0.96343 0.90015 0.91104 0.87417 0.91218 0.86361 0.87861 0.95638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.76 9.82 71.24 0.70 -2.06 16 2 C 0.04 1.43 6.74 41.52 0.28 1.71 16 3 N -0.50 -15.20 10.53 -191.55 -2.02 -17.22 16 4 C 0.02 0.35 12.23 130.66 1.60 1.95 16 5 S 0.16 3.54 23.22 -56.49 -1.31 2.23 16 6 C -0.22 -6.79 5.84 24.64 0.14 -6.65 16 7 C -0.03 -0.89 5.07 29.85 0.15 -0.73 16 8 C 0.08 2.93 4.75 86.31 0.41 3.34 16 9 N -0.54 -21.24 4.66 -900.81 -4.20 -25.44 16 10 C 0.20 9.84 4.77 85.56 0.41 10.25 16 11 C -0.54 -28.06 7.33 25.60 0.19 -27.87 16 12 H 0.05 2.72 5.96 -2.91 -0.02 2.70 16 13 C 0.02 1.33 5.46 84.66 0.46 1.80 16 14 N -0.92 -52.79 13.29 21.45 0.28 -52.51 16 15 Si 0.93 42.94 29.54 68.60 2.03 44.97 16 16 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 17 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 18 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 19 C 0.07 2.62 4.70 86.30 0.41 3.03 16 20 C 0.08 2.62 4.98 86.30 0.43 3.05 16 21 N -0.53 -15.65 4.73 -895.22 -4.23 -19.88 16 22 C 0.02 0.48 5.44 86.31 0.47 0.95 16 23 C 0.07 1.73 7.01 72.01 0.50 2.23 16 24 O -0.41 -10.58 10.83 -148.98 -1.61 -12.19 16 25 C 0.07 1.36 7.01 72.02 0.50 1.86 16 26 C 0.02 0.38 5.65 86.32 0.49 0.86 16 27 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 28 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.07 2.73 7.18 -2.39 -0.02 2.71 16 30 H 0.23 3.01 8.06 -2.91 -0.02 2.98 16 31 H 0.07 2.70 5.79 -2.39 -0.01 2.68 16 32 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 33 H 0.02 0.92 6.38 -2.39 -0.02 0.90 16 34 H 0.07 2.32 7.86 -2.38 -0.02 2.30 16 35 H 0.00 0.02 6.70 -2.39 -0.02 0.00 16 36 H 0.02 0.91 6.37 -2.39 -0.02 0.90 16 37 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 38 H 0.03 1.07 4.64 -2.38 -0.01 1.06 16 39 H 0.08 2.49 7.80 -2.39 -0.02 2.47 16 40 H 0.08 2.68 8.04 -2.39 -0.02 2.66 16 41 H 0.01 0.36 6.80 -2.38 -0.02 0.34 16 42 H 0.02 0.65 8.14 -2.38 -0.02 0.63 16 43 H 0.08 2.62 6.42 -2.39 -0.02 2.60 16 44 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.11 2.32 8.14 -2.38 -0.02 2.30 16 46 H 0.07 1.29 8.14 -2.39 -0.02 1.28 16 47 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 48 H 0.10 2.12 8.09 -2.39 -0.02 2.10 16 49 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -63.02 392.57 -2.98 -66.00 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: 0.94 Total: 20.31 kcal Atomic # 6 Polarization: -13.42 SS G_CDS: 7.14 Total: -6.28 kcal Atomic # 7 Polarization: -104.88 SS G_CDS: -10.16 Total: -115.05 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: -1.61 Total: -12.19 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Atomic # 16 Polarization: 3.54 SS G_CDS: -1.31 Total: 2.23 kcal Total: -63.02 -2.98 -66.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081515474.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.879 kcal (2) G-P(sol) polarization free energy of solvation -63.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds