Wall clock time and date at job start Tue Mar 31 2020 22:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29028 * 124.91333 * 2 1 4 4 C 1.31779 * 117.12142 * 179.97438 * 3 2 1 5 5 C 1.50709 * 122.74809 * 179.97438 * 4 3 2 6 6 C 1.33639 * 114.50447 * 0.02562 * 4 3 2 7 7 C 1.50704 * 126.03953 * 179.97438 * 6 4 3 8 8 N 1.46898 * 109.46600 * 98.77151 * 7 6 4 9 9 C 1.46898 * 111.00195 * 288.37430 * 8 7 6 10 10 C 1.50694 * 109.47410 * 159.25411 * 9 8 7 11 11 H 1.08005 * 120.00118 * 357.31209 * 10 9 8 12 12 C 1.37880 * 120.00225 * 177.31059 * 10 9 8 13 13 N 1.31510 * 120.00398 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 119.99922 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.46762 * 90.00062 * 14 12 10 16 16 H 1.48499 * 109.47419 * 210.00465 * 14 12 10 17 17 H 1.48505 * 109.47270 * 330.00329 * 14 12 10 18 18 C 1.46904 * 111.00118 * 164.41784 * 8 7 6 19 19 C 1.52997 * 109.47519 * 201.06741 * 18 8 7 20 20 N 1.46900 * 109.47206 * 177.61911 * 19 18 8 21 21 C 1.47008 * 110.99829 * 293.63444 * 20 19 18 22 22 C 1.53102 * 109.26009 * 177.60670 * 21 20 19 23 23 O 1.43019 * 109.25496 * 56.84889 * 22 21 20 24 24 C 1.43018 * 113.73569 * 301.32913 * 23 22 21 25 25 C 1.47010 * 111.00042 * 169.99838 * 20 19 18 26 26 S 1.70972 * 124.91865 * 180.31424 * 2 1 3 27 27 H 1.09007 * 109.47359 * 89.97158 * 1 2 3 28 28 H 1.09001 * 109.47188 * 209.97375 * 1 2 3 29 29 H 1.09001 * 109.47467 * 329.97803 * 1 2 3 30 30 H 1.08994 * 109.47191 * 275.40993 * 5 4 3 31 31 H 1.08996 * 109.46859 * 35.41719 * 5 4 3 32 32 H 1.09000 * 109.46994 * 155.41244 * 5 4 3 33 33 H 1.08999 * 109.47371 * 338.77168 * 7 6 4 34 34 H 1.08998 * 109.46837 * 218.76585 * 7 6 4 35 35 H 1.09002 * 109.46766 * 279.25458 * 9 8 7 36 36 H 1.08998 * 109.47255 * 39.24881 * 9 8 7 37 37 H 0.96991 * 120.00608 * 179.97438 * 13 12 10 38 38 H 1.09002 * 109.46575 * 81.06045 * 18 8 7 39 39 H 1.09005 * 109.46687 * 321.07167 * 18 8 7 40 40 H 1.08997 * 109.47133 * 57.61383 * 19 18 8 41 41 H 1.09003 * 109.46975 * 297.61931 * 19 18 8 42 42 H 1.09002 * 109.50922 * 297.54442 * 21 20 19 43 43 H 1.09004 * 109.51226 * 57.67418 * 21 20 19 44 44 H 1.08995 * 109.50240 * 296.91375 * 22 21 20 45 45 H 1.08996 * 109.54224 * 176.80378 * 22 21 20 46 46 H 1.08999 * 109.50735 * 298.73608 * 24 23 22 47 47 H 1.09000 * 109.54098 * 178.62585 * 24 23 22 48 48 H 1.08998 * 109.50657 * 302.33135 * 25 20 19 49 49 H 1.09006 * 109.50689 * 62.41215 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5511 0.8794 0.0005 5 6 4.5307 2.0247 0.0000 6 6 3.9354 -0.4005 0.0004 7 6 5.3575 -0.8993 0.0004 8 7 5.7496 -1.2607 1.3692 9 6 5.9239 -0.0623 2.2007 10 6 5.8179 -0.4405 3.6556 11 1 5.5959 -1.4603 3.9337 12 6 6.0045 0.5152 4.6317 13 7 5.9125 0.1850 5.9014 14 14 6.3893 2.2787 4.1508 15 1 5.1222 3.0380 3.9991 16 1 7.2211 2.9096 5.2069 17 1 7.1305 2.2905 2.8640 18 6 6.9671 -2.0827 1.3685 19 6 7.0568 -2.8627 2.6816 20 7 8.2440 -3.7275 2.6574 21 6 8.1077 -4.7809 1.6412 22 6 9.3879 -5.6200 1.6087 23 8 9.6350 -6.1539 2.9123 24 6 9.7738 -5.1553 3.9266 25 6 8.4975 -4.3116 3.9825 26 16 2.4857 -1.4019 -0.0077 27 1 -0.3634 0.0005 -1.0277 28 1 -0.3634 -0.8902 0.5134 29 1 -0.3634 0.8898 0.5142 30 1 4.6935 2.3631 -1.0232 31 1 4.1302 2.8455 0.5949 32 1 5.4768 1.6937 0.4281 33 1 6.0174 -0.1156 -0.3716 34 1 5.4351 -1.7756 -0.6431 35 1 6.9045 0.3733 2.0090 36 1 5.1494 0.6648 1.9570 37 1 6.0441 0.8572 6.5881 38 1 7.8404 -1.4381 1.2682 39 1 6.9333 -2.7813 0.5324 40 1 6.1634 -3.4753 2.8021 41 1 7.1332 -2.1639 3.5148 42 1 7.2602 -5.4195 1.8902 43 1 7.9463 -4.3255 0.6640 44 1 10.2267 -4.9926 1.3073 45 1 9.2703 -6.4371 0.8970 46 1 10.6238 -4.5144 3.6926 47 1 9.9349 -5.6357 4.8917 48 1 8.6205 -3.5134 4.7146 49 1 7.6558 -4.9420 4.2694 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081515521.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:47 Heat of formation + Delta-G solvation = 17.020245 kcal Electronic energy + Delta-G solvation = -28259.458796 eV Core-core repulsion = 24541.873030 eV Total energy + Delta-G solvation = -3717.585767 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.75370 -39.34480 -37.35322 -35.32230 -33.09053 -32.44355 -31.05949 -30.04320 -29.06035 -28.81858 -27.23494 -25.41550 -23.84449 -23.47255 -22.50069 -21.70698 -20.23903 -20.00072 -18.45836 -17.56074 -17.07745 -16.13128 -16.01221 -15.40291 -15.09545 -14.96796 -14.88568 -14.75359 -14.32825 -14.23112 -13.69035 -13.58827 -13.32830 -13.19553 -12.84783 -12.76075 -12.54671 -12.47457 -12.24258 -11.97359 -11.86141 -11.84363 -11.54046 -11.27524 -11.21499 -11.08733 -10.88208 -10.67571 -10.40574 -10.35927 -10.11432 -9.83162 -9.53142 -9.32865 -9.17344 -8.89446 -8.56609 -8.26607 -8.02829 -7.53383 -6.09391 -4.05123 1.00229 1.66117 2.08812 3.05206 3.25730 3.32111 3.34060 3.88973 4.07957 4.30814 4.38629 4.80588 5.04209 5.13732 5.17700 5.20698 5.21989 5.23569 5.29924 5.37007 5.42338 5.44208 5.45139 5.58521 5.68354 5.71005 5.73033 5.76509 5.80458 5.86281 5.91498 5.95328 6.08769 6.10606 6.12718 6.15533 6.21315 6.55846 6.57340 6.72088 6.80437 6.94313 7.19315 7.36248 7.44305 7.57758 7.78721 7.92125 8.05381 8.59376 8.97011 9.52378 11.02554 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009762 B = 0.003950 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2867.597382 B = 7086.260107 C = 8947.969001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.029 3.971 3 N -0.471 5.471 4 C 0.064 3.936 5 C -0.083 4.083 6 C -0.190 4.190 7 C 0.129 3.871 8 N -0.526 5.526 9 C 0.154 3.846 10 C -0.506 4.506 11 H 0.088 0.912 12 C 0.072 3.928 13 N -0.898 5.898 14 Si 0.865 3.135 15 H -0.275 1.275 16 H -0.286 1.286 17 H -0.266 1.266 18 C 0.078 3.922 19 C 0.050 3.950 20 N -0.538 5.538 21 C 0.014 3.986 22 C 0.065 3.935 23 O -0.391 6.391 24 C 0.065 3.935 25 C 0.022 3.978 26 S 0.132 5.868 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.050 0.950 34 H 0.076 0.924 35 H -0.006 1.006 36 H 0.031 0.969 37 H 0.263 0.737 38 H 0.037 0.963 39 H 0.051 0.949 40 H 0.034 0.966 41 H 0.126 0.874 42 H 0.038 0.962 43 H 0.083 0.917 44 H 0.056 0.944 45 H 0.091 0.909 46 H 0.057 0.943 47 H 0.094 0.906 48 H 0.091 0.909 49 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.626 -6.258 -12.566 14.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.249 4.249 3 N -0.186 5.186 4 C -0.069 4.069 5 C -0.143 4.143 6 C -0.311 4.311 7 C -0.001 4.001 8 N -0.250 5.250 9 C 0.028 3.972 10 C -0.545 4.545 11 H 0.106 0.894 12 C -0.130 4.130 13 N -0.536 5.536 14 Si 0.692 3.308 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.191 1.191 18 C -0.050 4.050 19 C -0.076 4.076 20 N -0.264 5.264 21 C -0.115 4.115 22 C -0.012 4.012 23 O -0.310 6.310 24 C -0.012 4.012 25 C -0.107 4.107 26 S 0.388 5.612 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.068 0.932 34 H 0.094 0.906 35 H 0.011 0.989 36 H 0.049 0.951 37 H 0.073 0.927 38 H 0.055 0.945 39 H 0.069 0.931 40 H 0.052 0.948 41 H 0.143 0.857 42 H 0.057 0.943 43 H 0.101 0.899 44 H 0.074 0.926 45 H 0.109 0.891 46 H 0.076 0.924 47 H 0.113 0.887 48 H 0.110 0.890 49 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -1.061 -6.940 -12.267 14.134 hybrid contribution 0.541 2.054 -0.170 2.131 sum -0.520 -4.886 -12.437 13.372 Atomic orbital electron populations 1.20357 0.85665 1.03999 1.03218 1.26788 1.01410 0.91602 1.05091 1.66060 1.04546 1.31904 1.16127 1.20010 0.90022 0.94033 1.02798 1.20486 0.96596 0.94977 1.02207 1.25516 0.99686 0.95165 1.10777 1.20379 0.88252 0.99121 0.92365 1.61878 1.33622 1.22130 1.07398 1.20441 0.94874 0.87627 0.94224 1.21082 1.47578 0.98193 0.87602 0.89384 1.24856 0.95042 0.98229 0.94884 1.69866 1.50227 1.34164 0.99388 0.87012 0.78920 0.86174 0.78661 1.20115 1.21194 1.19112 1.21851 0.90756 0.95532 0.96866 1.22649 0.88504 0.95543 1.00937 1.62212 1.40491 1.18897 1.04812 1.22808 0.97409 0.93640 0.97615 1.22639 0.96460 0.97269 0.84857 1.87934 1.92614 1.33165 1.17255 1.22684 0.96844 0.90233 0.91458 1.22704 0.97411 0.98594 0.91967 1.83703 0.97438 1.12057 1.68019 0.90156 0.90325 0.89621 0.91213 0.90775 0.90290 0.93243 0.90609 0.98858 0.95072 0.92669 0.94458 0.93071 0.94809 0.85657 0.94344 0.89921 0.92575 0.89067 0.92440 0.88748 0.89020 0.94196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.78 10.46 36.00 0.38 -0.40 16 2 C 0.03 0.44 7.39 -13.46 -0.10 0.34 16 3 N -0.47 -8.36 10.53 -8.06 -0.08 -8.45 16 4 C 0.06 1.13 6.12 -84.22 -0.52 0.61 16 5 C -0.08 -1.35 9.27 36.01 0.33 -1.01 16 6 C -0.19 -3.25 5.50 -35.92 -0.20 -3.45 16 7 C 0.13 2.11 5.16 -4.97 -0.03 2.09 16 8 N -0.53 -10.24 4.38 -237.52 -1.04 -11.28 16 9 C 0.15 3.52 2.99 -4.98 -0.01 3.51 16 10 C -0.51 -13.53 7.79 -34.44 -0.27 -13.80 16 11 H 0.09 2.54 6.21 -52.48 -0.33 2.21 16 12 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 13 N -0.90 -26.53 13.96 55.43 0.77 -25.76 16 14 Si 0.86 21.09 27.52 -169.99 -4.68 16.41 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 17 H -0.27 -6.17 6.47 56.52 0.37 -5.81 16 18 C 0.08 1.38 5.00 -3.82 -0.02 1.36 16 19 C 0.05 0.95 4.07 -3.83 -0.02 0.93 16 20 N -0.54 -8.73 4.73 -234.31 -1.11 -9.84 16 21 C 0.01 0.19 5.44 -3.71 -0.02 0.17 16 22 C 0.06 0.79 7.01 37.21 0.26 1.05 16 23 O -0.39 -5.51 10.83 -35.23 -0.38 -5.89 16 24 C 0.06 0.85 7.01 37.21 0.26 1.11 16 25 C 0.02 0.33 5.64 -3.71 -0.02 0.31 16 26 S 0.13 2.00 23.18 -107.50 -2.49 -0.50 16 27 H 0.08 0.70 8.14 -51.92 -0.42 0.28 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.08 1.33 5.06 -51.93 -0.26 1.07 16 33 H 0.05 0.77 6.82 -51.93 -0.35 0.42 16 34 H 0.08 1.07 7.68 -51.93 -0.40 0.67 16 35 H -0.01 -0.15 6.56 -51.93 -0.34 -0.49 16 36 H 0.03 0.74 4.25 -51.93 -0.22 0.52 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.04 0.69 7.69 -51.93 -0.40 0.29 16 39 H 0.05 0.78 5.89 -51.93 -0.31 0.47 16 40 H 0.03 0.67 8.12 -51.93 -0.42 0.25 16 41 H 0.13 2.86 5.06 -51.93 -0.26 2.60 16 42 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.08 1.04 6.34 -51.93 -0.33 0.71 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 48 H 0.09 1.49 8.09 -51.93 -0.42 1.07 16 49 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 385.75 15.07 5.81 5.81 Total: -1.00 -31.13 385.75 -11.12 -42.25 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -7.86 Total: 2.50 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: -0.06 Total: -5.26 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: -1.46 Total: -55.32 kcal Atomic # 8 Polarization: -5.51 SS G_CDS: -0.38 Total: -5.89 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.68 Total: 16.41 kcal Atomic # 16 Polarization: 2.00 SS G_CDS: -2.49 Total: -0.50 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.13 -11.12 -42.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081515521.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.272 kcal (2) G-P(sol) polarization free energy of solvation -31.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds