Wall clock time and date at job start Tue Mar 31 2020 22:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29028 * 124.91333 * 2 1 4 4 C 1.31779 * 117.12142 * 179.97438 * 3 2 1 5 5 C 1.50709 * 122.74809 * 179.97438 * 4 3 2 6 6 C 1.33639 * 114.50447 * 0.02562 * 4 3 2 7 7 C 1.50704 * 126.03953 * 179.97438 * 6 4 3 8 8 N 1.46898 * 109.46600 * 98.77151 * 7 6 4 9 9 C 1.46898 * 111.00195 * 288.37430 * 8 7 6 10 10 C 1.50694 * 109.47410 * 159.25411 * 9 8 7 11 11 H 1.08005 * 120.00118 * 357.31209 * 10 9 8 12 12 C 1.37880 * 120.00225 * 177.31059 * 10 9 8 13 13 N 1.31510 * 120.00398 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 119.99922 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.46762 * 90.00062 * 14 12 10 16 16 H 1.48499 * 109.47419 * 210.00465 * 14 12 10 17 17 H 1.48505 * 109.47270 * 330.00329 * 14 12 10 18 18 C 1.46904 * 111.00118 * 164.41784 * 8 7 6 19 19 C 1.52997 * 109.47519 * 201.06741 * 18 8 7 20 20 N 1.46900 * 109.47206 * 177.61911 * 19 18 8 21 21 C 1.47008 * 110.99829 * 293.63444 * 20 19 18 22 22 C 1.53102 * 109.26009 * 177.60670 * 21 20 19 23 23 O 1.43019 * 109.25496 * 56.84889 * 22 21 20 24 24 C 1.43018 * 113.73569 * 301.32913 * 23 22 21 25 25 C 1.47010 * 111.00042 * 169.99838 * 20 19 18 26 26 S 1.70972 * 124.91865 * 180.31424 * 2 1 3 27 27 H 1.09007 * 109.47359 * 89.97158 * 1 2 3 28 28 H 1.09001 * 109.47188 * 209.97375 * 1 2 3 29 29 H 1.09001 * 109.47467 * 329.97803 * 1 2 3 30 30 H 1.08994 * 109.47191 * 275.40993 * 5 4 3 31 31 H 1.08996 * 109.46859 * 35.41719 * 5 4 3 32 32 H 1.09000 * 109.46994 * 155.41244 * 5 4 3 33 33 H 1.08999 * 109.47371 * 338.77168 * 7 6 4 34 34 H 1.08998 * 109.46837 * 218.76585 * 7 6 4 35 35 H 1.09002 * 109.46766 * 279.25458 * 9 8 7 36 36 H 1.08998 * 109.47255 * 39.24881 * 9 8 7 37 37 H 0.96991 * 120.00608 * 179.97438 * 13 12 10 38 38 H 1.09002 * 109.46575 * 81.06045 * 18 8 7 39 39 H 1.09005 * 109.46687 * 321.07167 * 18 8 7 40 40 H 1.08997 * 109.47133 * 57.61383 * 19 18 8 41 41 H 1.09003 * 109.46975 * 297.61931 * 19 18 8 42 42 H 1.09002 * 109.50922 * 297.54442 * 21 20 19 43 43 H 1.09004 * 109.51226 * 57.67418 * 21 20 19 44 44 H 1.08995 * 109.50240 * 296.91375 * 22 21 20 45 45 H 1.08996 * 109.54224 * 176.80378 * 22 21 20 46 46 H 1.08999 * 109.50735 * 298.73608 * 24 23 22 47 47 H 1.09000 * 109.54098 * 178.62585 * 24 23 22 48 48 H 1.08998 * 109.50657 * 302.33135 * 25 20 19 49 49 H 1.09006 * 109.50689 * 62.41215 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5511 0.8794 0.0005 5 6 4.5307 2.0247 0.0000 6 6 3.9354 -0.4005 0.0004 7 6 5.3575 -0.8993 0.0004 8 7 5.7496 -1.2607 1.3692 9 6 5.9239 -0.0623 2.2007 10 6 5.8179 -0.4405 3.6556 11 1 5.5959 -1.4603 3.9337 12 6 6.0045 0.5152 4.6317 13 7 5.9125 0.1850 5.9014 14 14 6.3893 2.2787 4.1508 15 1 5.1222 3.0380 3.9991 16 1 7.2211 2.9096 5.2069 17 1 7.1305 2.2905 2.8640 18 6 6.9671 -2.0827 1.3685 19 6 7.0568 -2.8627 2.6816 20 7 8.2440 -3.7275 2.6574 21 6 8.1077 -4.7809 1.6412 22 6 9.3879 -5.6200 1.6087 23 8 9.6350 -6.1539 2.9123 24 6 9.7738 -5.1553 3.9266 25 6 8.4975 -4.3116 3.9825 26 16 2.4857 -1.4019 -0.0077 27 1 -0.3634 0.0005 -1.0277 28 1 -0.3634 -0.8902 0.5134 29 1 -0.3634 0.8898 0.5142 30 1 4.6935 2.3631 -1.0232 31 1 4.1302 2.8455 0.5949 32 1 5.4768 1.6937 0.4281 33 1 6.0174 -0.1156 -0.3716 34 1 5.4351 -1.7756 -0.6431 35 1 6.9045 0.3733 2.0090 36 1 5.1494 0.6648 1.9570 37 1 6.0441 0.8572 6.5881 38 1 7.8404 -1.4381 1.2682 39 1 6.9333 -2.7813 0.5324 40 1 6.1634 -3.4753 2.8021 41 1 7.1332 -2.1639 3.5148 42 1 7.2602 -5.4195 1.8902 43 1 7.9463 -4.3255 0.6640 44 1 10.2267 -4.9926 1.3073 45 1 9.2703 -6.4371 0.8970 46 1 10.6238 -4.5144 3.6926 47 1 9.9349 -5.6357 4.8917 48 1 8.6205 -3.5134 4.7146 49 1 7.6558 -4.9420 4.2694 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081515521.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:47 Heat of formation + Delta-G solvation = -5.976506 kcal Electronic energy + Delta-G solvation = -28260.456010 eV Core-core repulsion = 24541.873030 eV Total energy + Delta-G solvation = -3718.582981 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.00907 -40.51785 -38.80510 -36.58811 -34.77456 -34.03627 -32.17352 -31.29184 -30.62663 -30.08767 -28.71793 -26.70366 -25.04891 -24.93185 -23.74070 -23.19993 -21.73105 -21.30632 -19.71991 -19.04262 -18.73327 -17.45290 -17.14437 -16.78245 -16.65108 -16.25978 -16.14501 -15.95178 -15.71334 -15.57817 -15.16526 -14.93264 -14.64023 -14.46491 -14.34421 -14.09135 -13.85580 -13.79630 -13.57348 -13.22866 -13.18163 -13.04932 -12.88141 -12.71978 -12.55281 -12.41748 -12.30303 -12.09629 -12.06027 -11.91991 -11.65208 -11.37057 -11.15663 -10.70973 -10.62520 -10.55313 -10.13410 -9.48838 -9.37349 -9.07612 -8.24786 -6.23150 -0.21608 0.48582 0.86865 1.30616 1.32080 1.39620 1.79549 2.33240 2.68235 2.96511 3.08438 3.20865 3.40798 3.91204 3.93353 3.98841 4.05606 4.08632 4.14136 4.19699 4.29471 4.34887 4.42654 4.45250 4.52909 4.55206 4.57972 4.62569 4.68473 4.69537 4.74005 4.78760 4.84617 4.88693 4.91543 4.96484 4.99195 5.04057 5.08504 5.12285 5.33224 5.37162 5.61138 5.89884 6.02509 6.08768 6.19015 6.37691 6.60960 6.80485 6.83025 7.37139 8.90245 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009762 B = 0.003950 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2867.597382 B = 7086.260107 C = 8947.969001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.030 3.970 3 N -0.503 5.503 4 C 0.048 3.952 5 C -0.082 4.082 6 C -0.217 4.217 7 C 0.132 3.868 8 N -0.540 5.540 9 C 0.169 3.831 10 C -0.498 4.498 11 H 0.055 0.945 12 C 0.015 3.985 13 N -0.944 5.944 14 Si 0.922 3.078 15 H -0.276 1.276 16 H -0.285 1.285 17 H -0.245 1.245 18 C 0.085 3.915 19 C 0.066 3.934 20 N -0.541 5.541 21 C 0.014 3.986 22 C 0.065 3.935 23 O -0.403 6.403 24 C 0.072 3.928 25 C 0.020 3.980 26 S 0.152 5.848 27 H 0.106 0.894 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.102 0.898 35 H -0.009 1.009 36 H 0.029 0.971 37 H 0.263 0.737 38 H 0.033 0.967 39 H 0.085 0.915 40 H 0.013 0.987 41 H 0.079 0.921 42 H 0.029 0.971 43 H 0.100 0.900 44 H 0.064 0.936 45 H 0.120 0.880 46 H 0.064 0.936 47 H 0.114 0.886 48 H 0.073 0.927 49 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.350 -6.724 -15.369 16.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.248 4.248 3 N -0.220 5.220 4 C -0.084 4.084 5 C -0.142 4.142 6 C -0.338 4.338 7 C 0.002 3.998 8 N -0.264 5.264 9 C 0.042 3.958 10 C -0.536 4.536 11 H 0.073 0.927 12 C -0.183 4.183 13 N -0.586 5.586 14 Si 0.747 3.253 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.169 1.169 18 C -0.043 4.043 19 C -0.062 4.062 20 N -0.267 5.267 21 C -0.114 4.114 22 C -0.012 4.012 23 O -0.321 6.321 24 C -0.004 4.004 25 C -0.109 4.109 26 S 0.408 5.592 27 H 0.124 0.876 28 H 0.115 0.885 29 H 0.104 0.896 30 H 0.114 0.886 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.121 0.879 35 H 0.009 0.991 36 H 0.047 0.953 37 H 0.072 0.928 38 H 0.051 0.949 39 H 0.103 0.897 40 H 0.031 0.969 41 H 0.097 0.903 42 H 0.048 0.952 43 H 0.118 0.882 44 H 0.083 0.917 45 H 0.138 0.862 46 H 0.083 0.917 47 H 0.132 0.868 48 H 0.091 0.909 49 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -0.777 -7.425 -15.104 16.849 hybrid contribution 0.355 2.072 0.683 2.210 sum -0.422 -5.354 -14.421 15.389 Atomic orbital electron populations 1.20583 0.82736 1.04905 1.05160 1.27585 1.03201 0.91154 1.02845 1.66124 1.04810 1.33059 1.17994 1.20316 0.90515 0.94748 1.02807 1.20493 0.95703 0.94334 1.03620 1.25674 1.00637 0.95573 1.11947 1.20464 0.88090 1.00670 0.90554 1.61718 1.34523 1.20853 1.09327 1.20124 0.94394 0.88901 0.92345 1.21335 1.45647 0.96641 0.89989 0.92742 1.25622 0.95492 1.02373 0.94787 1.70013 1.52543 1.35446 1.00567 0.86090 0.78841 0.81199 0.79214 1.20134 1.21093 1.16850 1.21822 0.89880 0.95569 0.97029 1.22253 0.88785 0.94964 1.00162 1.62224 1.38724 1.19957 1.05768 1.22930 0.98269 0.92993 0.97245 1.22818 0.95585 0.98150 0.84603 1.87926 1.92537 1.33621 1.18064 1.22685 0.95253 0.90014 0.92492 1.22729 0.98522 0.98142 0.91464 1.83555 0.96545 1.11556 1.67545 0.87565 0.88497 0.89569 0.88613 0.91649 0.91221 0.92160 0.87942 0.99105 0.95277 0.92832 0.94874 0.89730 0.96865 0.90294 0.95221 0.88231 0.91738 0.86189 0.91743 0.86843 0.90884 0.95469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.41 10.46 71.24 0.75 -0.67 16 2 C 0.03 0.86 7.39 88.52 0.65 1.51 16 3 N -0.50 -17.33 10.53 -179.40 -1.89 -19.22 16 4 C 0.05 1.66 6.12 41.53 0.25 1.92 16 5 C -0.08 -2.55 9.27 71.24 0.66 -1.89 16 6 C -0.22 -7.11 5.50 24.64 0.14 -6.97 16 7 C 0.13 4.04 5.16 85.56 0.44 4.48 16 8 N -0.54 -20.64 4.38 -905.37 -3.96 -24.60 16 9 C 0.17 7.73 2.99 85.56 0.26 7.99 16 10 C -0.50 -27.52 7.79 25.60 0.20 -27.32 16 11 H 0.05 3.33 6.21 -2.91 -0.02 3.31 16 12 C 0.01 0.83 5.47 84.66 0.46 1.30 16 13 N -0.94 -58.22 13.96 21.45 0.30 -57.92 16 14 Si 0.92 44.05 27.52 68.60 1.89 45.94 16 15 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 16 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 17 H -0.24 -10.75 6.47 99.48 0.64 -10.10 16 18 C 0.08 2.92 5.00 86.30 0.43 3.35 16 19 C 0.07 2.56 4.07 86.30 0.35 2.91 16 20 N -0.54 -17.53 4.73 -895.22 -4.23 -21.76 16 21 C 0.01 0.35 5.44 86.32 0.47 0.82 16 22 C 0.06 1.41 7.01 72.02 0.50 1.91 16 23 O -0.40 -10.55 10.83 -148.98 -1.61 -12.16 16 24 C 0.07 1.83 7.01 72.01 0.50 2.33 16 25 C 0.02 0.64 5.64 86.31 0.49 1.12 16 26 S 0.15 4.34 23.18 -56.49 -1.31 3.03 16 27 H 0.11 1.51 8.14 -2.38 -0.02 1.49 16 28 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.07 2.26 5.06 -2.39 -0.01 2.24 16 33 H 0.06 1.73 6.82 -2.39 -0.02 1.72 16 34 H 0.10 2.57 7.68 -2.39 -0.02 2.55 16 35 H -0.01 -0.40 6.56 -2.39 -0.02 -0.42 16 36 H 0.03 1.37 4.25 -2.39 -0.01 1.35 16 37 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 38 H 0.03 1.18 7.69 -2.39 -0.02 1.16 16 39 H 0.08 2.34 5.89 -2.38 -0.01 2.32 16 40 H 0.01 0.55 8.12 -2.39 -0.02 0.53 16 41 H 0.08 3.83 5.06 -2.39 -0.01 3.82 16 42 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.10 2.20 6.34 -2.39 -0.02 2.18 16 44 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 47 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 48 H 0.07 2.55 8.09 -2.39 -0.02 2.53 16 49 H 0.03 0.91 8.14 -2.38 -0.02 0.89 16 Total: -1.00 -70.05 385.75 -3.38 -73.43 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: 0.88 Total: 20.48 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: 6.56 Total: -7.21 kcal Atomic # 7 Polarization: -113.72 SS G_CDS: -9.78 Total: -123.50 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: -1.61 Total: -12.16 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.89 Total: 45.94 kcal Atomic # 16 Polarization: 4.34 SS G_CDS: -1.31 Total: 3.03 kcal Total: -70.05 -3.38 -73.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081515521.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.453 kcal (2) G-P(sol) polarization free energy of solvation -70.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds