Wall clock time and date at job start Tue Mar 31 2020 22:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31780 * 122.75221 * 2 1 4 4 C 1.29030 * 117.12866 * 180.02562 * 3 2 1 5 5 C 1.50700 * 124.91420 * 179.97438 * 4 3 2 6 6 N 1.46889 * 109.47166 * 90.00072 * 5 4 3 7 7 C 1.46902 * 111.00212 * 293.94679 * 6 5 4 8 8 C 1.50700 * 109.47681 * 163.98337 * 7 6 5 9 9 H 1.08000 * 119.99786 * 355.14179 * 8 7 6 10 10 C 1.37875 * 120.00296 * 175.13947 * 8 7 6 11 11 N 1.31516 * 119.99922 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00199 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47028 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.47141 * 119.99946 * 12 10 8 15 15 H 1.48496 * 109.47264 * 240.00226 * 12 10 8 16 16 C 1.46901 * 111.00228 * 169.99773 * 6 5 4 17 17 C 1.53006 * 109.47148 * 283.31747 * 16 6 5 18 18 N 1.46896 * 109.47217 * 184.08585 * 17 16 6 19 19 C 1.47019 * 111.00023 * 293.63189 * 18 17 16 20 20 C 1.53101 * 109.25489 * 177.60725 * 19 18 17 21 21 O 1.43016 * 109.25732 * 56.85498 * 20 19 18 22 22 C 1.43015 * 113.73443 * 301.32253 * 21 20 19 23 23 C 1.47011 * 110.99942 * 169.99996 * 18 17 16 24 24 S 1.70975 * 110.16516 * 0.22516 * 4 3 2 25 25 C 1.33638 * 122.74918 * 180.02562 * 2 1 3 26 26 C 1.50705 * 126.03927 * 359.97438 * 25 2 1 27 27 H 1.09003 * 109.46713 * 89.97947 * 1 2 3 28 28 H 1.09004 * 109.47209 * 209.97878 * 1 2 3 29 29 H 1.08997 * 109.47271 * 329.98044 * 1 2 3 30 30 H 1.09004 * 109.46471 * 209.99570 * 5 4 3 31 31 H 1.08996 * 109.47392 * 329.99027 * 5 4 3 32 32 H 1.09006 * 109.47243 * 283.98887 * 7 6 5 33 33 H 1.09004 * 109.46667 * 43.98340 * 7 6 5 34 34 H 0.96998 * 120.00289 * 179.97438 * 11 10 8 35 35 H 1.09007 * 109.46877 * 43.31205 * 16 6 5 36 36 H 1.08999 * 109.47718 * 163.31148 * 16 6 5 37 37 H 1.08998 * 109.46837 * 304.08579 * 17 16 6 38 38 H 1.08998 * 109.47073 * 64.08105 * 17 16 6 39 39 H 1.08996 * 109.50258 * 297.54492 * 19 18 17 40 40 H 1.09001 * 109.50215 * 57.67805 * 19 18 17 41 41 H 1.08998 * 109.50403 * 296.91167 * 20 19 18 42 42 H 1.09005 * 109.53287 * 176.80666 * 20 19 18 43 43 H 1.08999 * 109.51128 * 298.74004 * 22 21 20 44 44 H 1.09000 * 109.54175 * 178.62884 * 22 21 20 45 45 H 1.09003 * 109.50239 * 302.32583 * 23 18 17 46 46 H 1.09001 * 109.50895 * 62.41252 * 23 18 17 47 47 H 1.09002 * 109.46423 * 90.00318 * 26 25 2 48 48 H 1.08999 * 109.47047 * 210.00102 * 26 25 2 49 49 H 1.08996 * 109.47309 * 330.00422 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2200 1.1083 0.0000 4 6 3.5040 0.9819 -0.0005 5 6 4.4835 2.1271 -0.0012 6 7 4.8024 2.4995 1.3835 7 6 3.6231 3.0488 2.0659 8 6 3.8595 3.0514 3.5542 9 1 4.7586 2.6106 3.9589 10 6 2.9282 3.6166 4.3992 11 7 1.8332 4.1531 3.9065 12 14 3.2216 3.6205 6.2440 13 1 4.5187 2.9610 6.5403 14 1 3.2550 5.0209 6.7370 15 1 2.1249 2.8832 6.9213 16 6 5.9251 3.4458 1.4290 17 6 7.2363 2.6931 1.1944 18 7 8.3660 3.6213 1.3367 19 6 8.3550 4.6322 0.2693 20 6 9.5109 5.6116 0.4896 21 8 10.7422 4.8855 0.5348 22 6 10.7877 3.8929 1.5634 23 6 9.6447 2.8961 1.3541 24 16 3.9333 -0.6731 -0.0074 25 6 2.2299 -1.1240 -0.0005 26 6 1.6847 -2.5289 -0.0006 27 1 -0.3633 0.0004 -1.0277 28 1 -0.3634 -0.8902 0.5135 29 1 -0.3634 0.8898 0.5141 30 1 5.3958 1.8246 -0.5153 31 1 4.0432 2.9815 -0.5151 32 1 3.4478 4.0690 1.7240 33 1 2.7522 2.4344 1.8374 34 1 1.1778 4.5504 4.5010 35 1 5.7957 4.2007 0.6534 36 1 5.9534 3.9294 2.4055 37 1 7.3307 1.8909 1.9263 38 1 7.2378 2.2703 0.1897 39 1 8.4721 4.1422 -0.6972 40 1 7.4095 5.1742 0.2913 41 1 9.3653 6.1405 1.4315 42 1 9.5416 6.3295 -0.3301 43 1 10.6793 4.3718 2.5365 44 1 11.7415 3.3671 1.5207 45 1 9.6407 2.1708 2.1678 46 1 9.7821 2.3778 0.4051 47 1 1.5529 -2.8673 -1.0283 48 1 2.3831 -3.1897 0.5129 49 1 0.7237 -2.5457 0.5135 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088603210.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:48 Heat of formation + Delta-G solvation = 9.630304 kcal Electronic energy + Delta-G solvation = -27732.259198 eV Core-core repulsion = 24014.352979 eV Total energy + Delta-G solvation = -3717.906219 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.66729 -39.50012 -37.20364 -35.43278 -33.13089 -32.44221 -31.24397 -29.95179 -29.36979 -28.23866 -26.61670 -25.00017 -24.41423 -24.04297 -22.35620 -21.80358 -20.39579 -19.89494 -18.48839 -17.52748 -16.67563 -16.28444 -16.12784 -15.34662 -15.29819 -15.08668 -14.91154 -14.63719 -14.46704 -14.14015 -13.92322 -13.51195 -13.28966 -12.98874 -12.87967 -12.83508 -12.59718 -12.23758 -12.06497 -11.99363 -11.89660 -11.80116 -11.66426 -11.42963 -11.26355 -10.92557 -10.78719 -10.70446 -10.61356 -10.38650 -10.27823 -9.88575 -9.66231 -9.28122 -9.05338 -8.78150 -8.37754 -8.30825 -8.20773 -7.38016 -5.96040 -3.97114 1.07815 1.73084 2.14477 3.17986 3.33571 3.40932 3.46133 3.71339 3.87465 4.43458 4.48221 4.82873 4.94021 5.00414 5.09360 5.11289 5.14164 5.23246 5.23445 5.33624 5.38623 5.43043 5.48953 5.50545 5.56851 5.60373 5.64040 5.70940 5.75186 5.79818 5.80638 5.88704 5.92295 5.94389 6.00645 6.06530 6.27391 6.38060 6.60729 6.63921 6.99497 7.10326 7.13115 7.28813 7.40321 7.83688 8.10265 8.16340 8.25877 8.53286 9.10730 9.66009 11.14223 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008008 B = 0.003855 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3495.512617 B = 7261.302334 C = 9782.168304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.070 3.930 3 N -0.459 5.459 4 C 0.086 3.914 5 C 0.126 3.874 6 N -0.530 5.530 7 C 0.189 3.811 8 C -0.503 4.503 9 H 0.063 0.937 10 C 0.056 3.944 11 N -0.895 5.895 12 Si 0.893 3.107 13 H -0.272 1.272 14 H -0.285 1.285 15 H -0.286 1.286 16 C 0.070 3.930 17 C 0.063 3.937 18 N -0.534 5.534 19 C 0.015 3.985 20 C 0.064 3.936 21 O -0.390 6.390 22 C 0.064 3.936 23 C 0.020 3.980 24 S 0.110 5.890 25 C -0.246 4.246 26 C -0.067 4.067 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.055 0.945 32 H -0.005 1.005 33 H 0.047 0.953 34 H 0.259 0.741 35 H 0.022 0.978 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.025 0.975 39 H 0.039 0.961 40 H 0.091 0.909 41 H 0.061 0.939 42 H 0.095 0.905 43 H 0.060 0.940 44 H 0.094 0.906 45 H 0.086 0.914 46 H 0.039 0.961 47 H 0.069 0.931 48 H 0.066 0.934 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.892 -7.313 -10.317 15.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.063 4.063 3 N -0.173 5.173 4 C -0.193 4.193 5 C -0.006 4.006 6 N -0.256 5.256 7 C 0.064 3.936 8 C -0.542 4.542 9 H 0.081 0.919 10 C -0.145 4.145 11 N -0.535 5.535 12 Si 0.721 3.279 13 H -0.197 1.197 14 H -0.211 1.211 15 H -0.212 1.212 16 C -0.059 4.059 17 C -0.065 4.065 18 N -0.260 5.260 19 C -0.113 4.113 20 C -0.013 4.013 21 O -0.309 6.309 22 C -0.013 4.013 23 C -0.109 4.109 24 S 0.366 5.634 25 C -0.367 4.367 26 C -0.126 4.126 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.073 0.927 32 H 0.013 0.987 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.040 0.960 36 H 0.117 0.883 37 H 0.103 0.897 38 H 0.044 0.956 39 H 0.057 0.943 40 H 0.109 0.891 41 H 0.079 0.921 42 H 0.113 0.887 43 H 0.078 0.922 44 H 0.113 0.887 45 H 0.105 0.895 46 H 0.057 0.943 47 H 0.088 0.912 48 H 0.085 0.915 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.719 -7.361 -9.697 15.578 hybrid contribution -1.318 0.340 0.131 1.368 sum 8.400 -7.021 -9.567 14.539 Atomic orbital electron populations 1.20335 0.87701 1.03394 1.02195 1.20126 0.97974 0.86340 1.01824 1.66157 1.04585 1.31129 1.15437 1.26710 0.93687 0.97395 1.01501 1.20616 0.93934 0.92506 0.93534 1.62081 1.09593 1.43639 1.10264 1.19902 0.86715 0.93618 0.93381 1.21161 1.05532 1.36721 0.90794 0.91907 1.24960 0.95212 0.95585 0.98754 1.69990 1.09574 1.39137 1.34780 0.86514 0.78184 0.77549 0.85627 1.19656 1.21137 1.21187 1.21939 0.88602 0.92576 1.02748 1.22177 0.89939 0.94792 0.99611 1.62116 1.02413 1.15618 1.45846 1.22839 1.00396 0.95156 0.92945 1.22678 0.83017 0.93379 1.02261 1.87945 1.36481 1.51500 1.54943 1.22658 0.97923 0.89346 0.91387 1.22751 0.90061 0.96669 1.01404 1.83613 1.06825 1.04006 1.68990 1.25552 0.95313 1.00597 1.15198 1.20147 1.00945 0.89423 1.02133 0.91180 0.91091 0.90332 0.90328 0.92695 0.98696 0.93528 0.93138 0.95983 0.88319 0.89730 0.95646 0.94316 0.89119 0.92088 0.88688 0.92171 0.88744 0.89530 0.94308 0.91216 0.91523 0.90541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.09 10.06 36.01 0.36 -0.72 16 2 C 0.07 1.21 6.74 -84.23 -0.57 0.64 16 3 N -0.46 -9.34 9.35 -8.06 -0.08 -9.41 16 4 C 0.09 1.62 6.10 -13.45 -0.08 1.54 16 5 C 0.13 2.28 5.37 -4.98 -0.03 2.25 16 6 N -0.53 -11.07 4.37 -237.51 -1.04 -12.11 16 7 C 0.19 4.93 4.59 -4.97 -0.02 4.91 16 8 C -0.50 -14.21 8.30 -34.44 -0.29 -14.49 16 9 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 10 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 11 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 12 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 13 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 14 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 15 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 16 C 0.07 1.29 4.66 -3.82 -0.02 1.27 16 17 C 0.06 0.95 5.02 -3.82 -0.02 0.93 16 18 N -0.53 -7.41 4.73 -234.30 -1.11 -8.52 16 19 C 0.01 0.19 5.44 -3.71 -0.02 0.17 16 20 C 0.06 0.72 7.01 37.21 0.26 0.98 16 21 O -0.39 -4.88 10.83 -35.23 -0.38 -5.26 16 22 C 0.06 0.69 7.01 37.21 0.26 0.95 16 23 C 0.02 0.23 5.64 -3.71 -0.02 0.21 16 24 S 0.11 1.72 23.18 -107.50 -2.49 -0.78 16 25 C -0.25 -3.74 6.59 -35.92 -0.24 -3.98 16 26 C -0.07 -0.73 10.10 36.01 0.36 -0.37 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.07 0.83 6.72 -51.93 -0.35 0.48 16 29 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 30 H 0.08 1.19 6.76 -51.93 -0.35 0.84 16 31 H 0.06 1.03 8.12 -51.93 -0.42 0.60 16 32 H 0.00 -0.14 8.05 -51.93 -0.42 -0.56 16 33 H 0.05 1.33 6.03 -51.93 -0.31 1.02 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.02 0.39 6.55 -51.92 -0.34 0.05 16 36 H 0.10 2.11 7.12 -51.93 -0.37 1.74 16 37 H 0.08 1.36 8.04 -51.93 -0.42 0.94 16 38 H 0.03 0.36 6.94 -51.93 -0.36 0.00 16 39 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.09 1.16 6.47 -51.93 -0.34 0.82 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.09 0.95 8.09 -51.93 -0.42 0.53 16 46 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 49 H 0.08 0.75 6.76 -51.93 -0.35 0.40 16 LS Contribution 397.86 15.07 6.00 6.00 Total: -1.00 -32.75 397.86 -11.75 -44.50 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -8.22 Total: -0.91 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: -0.15 Total: -4.20 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: -1.48 Total: -56.35 kcal Atomic # 8 Polarization: -4.88 SS G_CDS: -0.38 Total: -5.26 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -2.49 Total: -0.78 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.75 -11.75 -44.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088603210.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.134 kcal (2) G-P(sol) polarization free energy of solvation -32.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds