Wall clock time and date at job start Tue Mar 31 2020 22:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31780 * 122.75221 * 2 1 4 4 C 1.29030 * 117.12866 * 180.02562 * 3 2 1 5 5 C 1.50700 * 124.91420 * 179.97438 * 4 3 2 6 6 N 1.46889 * 109.47166 * 90.00072 * 5 4 3 7 7 C 1.46902 * 111.00212 * 293.94679 * 6 5 4 8 8 C 1.50700 * 109.47681 * 163.98337 * 7 6 5 9 9 H 1.08000 * 119.99786 * 355.14179 * 8 7 6 10 10 C 1.37875 * 120.00296 * 175.13947 * 8 7 6 11 11 N 1.31516 * 119.99922 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00199 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47028 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.47141 * 119.99946 * 12 10 8 15 15 H 1.48496 * 109.47264 * 240.00226 * 12 10 8 16 16 C 1.46901 * 111.00228 * 169.99773 * 6 5 4 17 17 C 1.53006 * 109.47148 * 283.31747 * 16 6 5 18 18 N 1.46896 * 109.47217 * 184.08585 * 17 16 6 19 19 C 1.47019 * 111.00023 * 293.63189 * 18 17 16 20 20 C 1.53101 * 109.25489 * 177.60725 * 19 18 17 21 21 O 1.43016 * 109.25732 * 56.85498 * 20 19 18 22 22 C 1.43015 * 113.73443 * 301.32253 * 21 20 19 23 23 C 1.47011 * 110.99942 * 169.99996 * 18 17 16 24 24 S 1.70975 * 110.16516 * 0.22516 * 4 3 2 25 25 C 1.33638 * 122.74918 * 180.02562 * 2 1 3 26 26 C 1.50705 * 126.03927 * 359.97438 * 25 2 1 27 27 H 1.09003 * 109.46713 * 89.97947 * 1 2 3 28 28 H 1.09004 * 109.47209 * 209.97878 * 1 2 3 29 29 H 1.08997 * 109.47271 * 329.98044 * 1 2 3 30 30 H 1.09004 * 109.46471 * 209.99570 * 5 4 3 31 31 H 1.08996 * 109.47392 * 329.99027 * 5 4 3 32 32 H 1.09006 * 109.47243 * 283.98887 * 7 6 5 33 33 H 1.09004 * 109.46667 * 43.98340 * 7 6 5 34 34 H 0.96998 * 120.00289 * 179.97438 * 11 10 8 35 35 H 1.09007 * 109.46877 * 43.31205 * 16 6 5 36 36 H 1.08999 * 109.47718 * 163.31148 * 16 6 5 37 37 H 1.08998 * 109.46837 * 304.08579 * 17 16 6 38 38 H 1.08998 * 109.47073 * 64.08105 * 17 16 6 39 39 H 1.08996 * 109.50258 * 297.54492 * 19 18 17 40 40 H 1.09001 * 109.50215 * 57.67805 * 19 18 17 41 41 H 1.08998 * 109.50403 * 296.91167 * 20 19 18 42 42 H 1.09005 * 109.53287 * 176.80666 * 20 19 18 43 43 H 1.08999 * 109.51128 * 298.74004 * 22 21 20 44 44 H 1.09000 * 109.54175 * 178.62884 * 22 21 20 45 45 H 1.09003 * 109.50239 * 302.32583 * 23 18 17 46 46 H 1.09001 * 109.50895 * 62.41252 * 23 18 17 47 47 H 1.09002 * 109.46423 * 90.00318 * 26 25 2 48 48 H 1.08999 * 109.47047 * 210.00102 * 26 25 2 49 49 H 1.08996 * 109.47309 * 330.00422 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2200 1.1083 0.0000 4 6 3.5040 0.9819 -0.0005 5 6 4.4835 2.1271 -0.0012 6 7 4.8024 2.4995 1.3835 7 6 3.6231 3.0488 2.0659 8 6 3.8595 3.0514 3.5542 9 1 4.7586 2.6106 3.9589 10 6 2.9282 3.6166 4.3992 11 7 1.8332 4.1531 3.9065 12 14 3.2216 3.6205 6.2440 13 1 4.5187 2.9610 6.5403 14 1 3.2550 5.0209 6.7370 15 1 2.1249 2.8832 6.9213 16 6 5.9251 3.4458 1.4290 17 6 7.2363 2.6931 1.1944 18 7 8.3660 3.6213 1.3367 19 6 8.3550 4.6322 0.2693 20 6 9.5109 5.6116 0.4896 21 8 10.7422 4.8855 0.5348 22 6 10.7877 3.8929 1.5634 23 6 9.6447 2.8961 1.3541 24 16 3.9333 -0.6731 -0.0074 25 6 2.2299 -1.1240 -0.0005 26 6 1.6847 -2.5289 -0.0006 27 1 -0.3633 0.0004 -1.0277 28 1 -0.3634 -0.8902 0.5135 29 1 -0.3634 0.8898 0.5141 30 1 5.3958 1.8246 -0.5153 31 1 4.0432 2.9815 -0.5151 32 1 3.4478 4.0690 1.7240 33 1 2.7522 2.4344 1.8374 34 1 1.1778 4.5504 4.5010 35 1 5.7957 4.2007 0.6534 36 1 5.9534 3.9294 2.4055 37 1 7.3307 1.8909 1.9263 38 1 7.2378 2.2703 0.1897 39 1 8.4721 4.1422 -0.6972 40 1 7.4095 5.1742 0.2913 41 1 9.3653 6.1405 1.4315 42 1 9.5416 6.3295 -0.3301 43 1 10.6793 4.3718 2.5365 44 1 11.7415 3.3671 1.5207 45 1 9.6407 2.1708 2.1678 46 1 9.7821 2.3778 0.4051 47 1 1.5529 -2.8673 -1.0283 48 1 2.3831 -3.1897 0.5129 49 1 0.7237 -2.5457 0.5135 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088603210.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:47 Heat of formation + Delta-G solvation = -13.898739 kcal Electronic energy + Delta-G solvation = -27733.279494 eV Core-core repulsion = 24014.352979 eV Total energy + Delta-G solvation = -3718.926515 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.95737 -40.53406 -38.70115 -36.61219 -34.83410 -34.11281 -32.16368 -31.14041 -30.67241 -29.89471 -28.03730 -26.38274 -25.76592 -24.99281 -24.02457 -23.18303 -21.63986 -21.24028 -19.79879 -18.81418 -18.50710 -17.62375 -17.13815 -16.79202 -16.67055 -16.44035 -16.04347 -15.93265 -15.63360 -15.53816 -15.30696 -14.84654 -14.49264 -14.27985 -14.16281 -14.06098 -13.76430 -13.65276 -13.43683 -13.33237 -13.23501 -13.02887 -12.91461 -12.79541 -12.59728 -12.56238 -12.32998 -12.15620 -11.95569 -11.90380 -11.70998 -11.45208 -11.30921 -10.67678 -10.60421 -10.45826 -10.04676 -9.49474 -9.36813 -9.11586 -8.17963 -6.27554 -0.21476 0.49079 0.84736 1.37859 1.37904 1.51840 1.84728 2.39195 2.65136 2.95953 3.13931 3.17248 3.49505 3.91331 3.92223 3.99679 4.04337 4.10258 4.12234 4.20598 4.21585 4.28903 4.36262 4.43096 4.46718 4.57501 4.59726 4.65015 4.68891 4.74621 4.79668 4.83549 4.87464 4.95805 4.96598 5.02006 5.05026 5.05586 5.07413 5.25369 5.37692 5.46973 5.65529 5.95513 6.00724 6.08190 6.18144 6.27129 6.51574 6.88248 6.95542 7.40807 8.92759 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008008 B = 0.003855 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3495.512617 B = 7261.302334 C = 9782.168304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.030 3.970 3 N -0.500 5.500 4 C 0.044 3.956 5 C 0.130 3.870 6 N -0.530 5.530 7 C 0.210 3.790 8 C -0.514 4.514 9 H 0.060 0.940 10 C 0.002 3.998 11 N -0.933 5.933 12 Si 0.964 3.036 13 H -0.262 1.262 14 H -0.278 1.278 15 H -0.280 1.280 16 C 0.076 3.924 17 C 0.080 3.920 18 N -0.550 5.550 19 C 0.015 3.985 20 C 0.065 3.935 21 O -0.402 6.402 22 C 0.063 3.937 23 C 0.020 3.980 24 S 0.156 5.844 25 C -0.232 4.232 26 C -0.069 4.069 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.050 0.950 30 H 0.112 0.888 31 H 0.040 0.960 32 H -0.044 1.044 33 H 0.020 0.980 34 H 0.262 0.738 35 H 0.026 0.974 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.040 0.960 39 H 0.043 0.957 40 H 0.081 0.919 41 H 0.056 0.944 42 H 0.115 0.885 43 H 0.057 0.943 44 H 0.120 0.880 45 H 0.094 0.906 46 H 0.044 0.956 47 H 0.095 0.905 48 H 0.079 0.921 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.481 -9.569 -10.368 17.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.101 4.101 3 N -0.216 5.216 4 C -0.234 4.234 5 C -0.001 4.001 6 N -0.256 5.256 7 C 0.084 3.916 8 C -0.553 4.553 9 H 0.078 0.922 10 C -0.196 4.196 11 N -0.574 5.574 12 Si 0.788 3.212 13 H -0.186 1.186 14 H -0.204 1.204 15 H -0.206 1.206 16 C -0.052 4.052 17 C -0.048 4.048 18 N -0.276 5.276 19 C -0.113 4.113 20 C -0.011 4.011 21 O -0.321 6.321 22 C -0.014 4.014 23 C -0.108 4.108 24 S 0.412 5.588 25 C -0.354 4.354 26 C -0.128 4.128 27 H 0.108 0.892 28 H 0.115 0.885 29 H 0.069 0.931 30 H 0.130 0.870 31 H 0.058 0.942 32 H -0.026 1.026 33 H 0.038 0.962 34 H 0.070 0.930 35 H 0.044 0.956 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.099 0.901 41 H 0.074 0.926 42 H 0.133 0.867 43 H 0.075 0.925 44 H 0.138 0.862 45 H 0.112 0.888 46 H 0.062 0.938 47 H 0.113 0.887 48 H 0.098 0.902 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 11.341 -9.619 -9.762 17.789 hybrid contribution -1.810 0.980 0.085 2.060 sum 9.531 -8.639 -9.677 16.097 Atomic orbital electron populations 1.20389 0.86053 1.03242 1.03443 1.20609 0.99382 0.86427 1.03706 1.66133 1.05825 1.33525 1.16136 1.26728 0.93614 0.99371 1.03657 1.20656 0.95395 0.92385 0.91670 1.61976 1.08072 1.43391 1.12133 1.19422 0.88079 0.90947 0.93146 1.21433 1.05332 1.36507 0.91996 0.92152 1.25864 0.94820 0.95077 1.03823 1.70132 1.10590 1.40057 1.36628 0.85419 0.78411 0.77872 0.79460 1.18645 1.20379 1.20622 1.21852 0.89610 0.92729 1.00997 1.21885 0.88628 0.94210 1.00115 1.62070 1.02939 1.15890 1.46721 1.22851 1.00578 0.95079 0.92765 1.22731 0.82274 0.93230 1.02894 1.87934 1.36742 1.51895 1.55482 1.22799 0.98729 0.88962 0.90863 1.22823 0.89028 0.96947 1.01966 1.83265 1.06867 1.00948 1.67722 1.26193 0.95010 1.02126 1.12035 1.20374 1.01671 0.86638 1.04127 0.89243 0.88477 0.93125 0.87015 0.94191 1.02635 0.96177 0.92967 0.95551 0.91698 0.90375 0.94157 0.93831 0.90067 0.92578 0.86663 0.92495 0.86187 0.88787 0.93807 0.88696 0.90199 0.89154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.03 10.06 71.24 0.72 -1.31 16 2 C 0.03 1.05 6.74 41.52 0.28 1.33 16 3 N -0.50 -21.16 9.35 -179.40 -1.68 -22.83 16 4 C 0.04 1.69 6.10 88.52 0.54 2.23 16 5 C 0.13 4.84 5.37 85.56 0.46 5.30 16 6 N -0.53 -22.97 4.37 -905.35 -3.95 -26.93 16 7 C 0.21 11.65 4.59 85.56 0.39 12.04 16 8 C -0.51 -30.05 8.30 25.60 0.21 -29.84 16 9 H 0.06 3.48 7.81 -2.91 -0.02 3.46 16 10 C 0.00 0.11 5.46 84.65 0.46 0.57 16 11 N -0.93 -58.46 13.29 21.45 0.28 -58.17 16 12 Si 0.96 45.86 29.54 68.60 2.03 47.89 16 13 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 14 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 15 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 16 C 0.08 2.91 4.66 86.31 0.40 3.31 16 17 C 0.08 2.37 5.02 86.31 0.43 2.80 16 18 N -0.55 -14.79 4.73 -895.20 -4.23 -19.02 16 19 C 0.02 0.37 5.44 86.31 0.47 0.84 16 20 C 0.07 1.41 7.01 72.02 0.50 1.91 16 21 O -0.40 -9.29 10.83 -148.98 -1.61 -10.90 16 22 C 0.06 1.23 7.01 72.02 0.50 1.74 16 23 C 0.02 0.43 5.64 86.32 0.49 0.92 16 24 S 0.16 4.67 23.18 -56.49 -1.31 3.36 16 25 C -0.23 -6.69 6.59 24.64 0.16 -6.53 16 26 C -0.07 -1.27 10.10 71.24 0.72 -0.55 16 27 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.10 2.12 6.72 -2.39 -0.02 2.10 16 29 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.11 3.31 6.76 -2.38 -0.02 3.29 16 31 H 0.04 1.59 8.12 -2.39 -0.02 1.57 16 32 H -0.04 -2.72 8.05 -2.38 -0.02 -2.74 16 33 H 0.02 1.22 6.03 -2.38 -0.01 1.21 16 34 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 35 H 0.03 0.97 6.55 -2.38 -0.02 0.95 16 36 H 0.06 2.90 7.12 -2.39 -0.02 2.89 16 37 H 0.08 2.44 8.04 -2.39 -0.02 2.42 16 38 H 0.04 1.08 6.94 -2.39 -0.02 1.07 16 39 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.08 2.09 6.47 -2.39 -0.02 2.08 16 41 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.12 1.97 8.14 -2.38 -0.02 1.95 16 43 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.09 1.87 8.09 -2.39 -0.02 1.85 16 46 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 48 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 49 H 0.09 1.46 6.76 -2.39 -0.02 1.44 16 Total: -1.00 -74.39 397.86 -2.80 -77.19 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: 0.93 Total: 14.65 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: 6.75 Total: -5.24 kcal Atomic # 7 Polarization: -117.38 SS G_CDS: -9.58 Total: -126.95 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: -1.61 Total: -10.90 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Atomic # 16 Polarization: 4.67 SS G_CDS: -1.31 Total: 3.36 kcal Total: -74.39 -2.80 -77.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088603210.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.293 kcal (2) G-P(sol) polarization free energy of solvation -74.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds