Wall clock time and date at job start Tue Mar 31 2020 22:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99713 * 2 1 4 4 H 1.48501 * 109.47391 * 270.00211 * 3 2 1 5 5 H 1.48495 * 109.47253 * 30.00357 * 3 2 1 6 6 H 1.48502 * 109.47099 * 150.00569 * 3 2 1 7 7 C 1.37874 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00219 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99937 * 180.02562 * 7 2 1 10 10 N 1.46897 * 109.47228 * 184.78809 * 9 7 2 11 11 C 1.46899 * 111.00144 * 288.37220 * 10 9 7 12 12 C 1.50697 * 109.46906 * 292.52150 * 11 10 9 13 13 C 1.34516 * 125.79271 * 89.71358 * 12 11 10 14 14 C 1.41378 * 106.84270 * 179.89316 * 13 12 11 15 15 C 1.34515 * 106.84366 * 0.36869 * 14 13 12 16 16 O 1.34302 * 125.78926 * 270.02512 * 12 11 10 17 17 C 1.46896 * 111.00132 * 164.41331 * 10 9 7 18 18 C 1.52998 * 109.47382 * 200.38325 * 17 10 9 19 19 H 1.09001 * 109.47231 * 53.45796 * 18 17 10 20 20 O 1.42900 * 109.47116 * 293.45994 * 18 17 10 21 21 C 1.52999 * 109.47179 * 173.46007 * 18 17 10 22 22 O 1.42901 * 109.47215 * 185.00020 * 21 18 17 23 23 C 1.42900 * 114.00391 * 180.02562 * 22 21 18 24 24 C 1.53187 * 109.54051 * 269.55472 * 23 22 21 25 25 C 1.53086 * 109.16313 * 183.15010 * 24 23 22 26 26 O 1.42901 * 109.41800 * 57.60620 * 25 24 23 27 27 C 1.42905 * 114.10070 * 298.84577 * 26 25 24 28 28 C 1.53093 * 109.41496 * 61.15086 * 27 26 25 29 29 H 0.96997 * 120.00372 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.47422 * 64.78309 * 9 7 2 31 31 H 1.09004 * 109.46777 * 304.78744 * 9 7 2 32 32 H 1.09000 * 109.47194 * 52.51919 * 11 10 9 33 33 H 1.08995 * 109.47141 * 172.52418 * 11 10 9 34 34 H 1.08001 * 126.57446 * 0.02562 * 13 12 11 35 35 H 1.07999 * 126.57894 * 180.17181 * 14 13 12 36 36 H 1.07999 * 125.79248 * 179.74908 * 15 14 13 37 37 H 1.09001 * 109.47043 * 80.38652 * 17 10 9 38 38 H 1.09000 * 109.47559 * 320.38345 * 17 10 9 39 39 H 0.96697 * 113.99980 * 299.99907 * 20 18 17 40 40 H 1.08998 * 109.47415 * 304.99925 * 21 18 17 41 41 H 1.09004 * 109.47202 * 65.00459 * 21 18 17 42 42 H 1.09003 * 109.54306 * 29.81548 * 23 22 21 43 43 H 1.08994 * 109.52208 * 303.05423 * 24 23 22 44 44 H 1.09008 * 109.52229 * 63.24441 * 24 23 22 45 45 H 1.09001 * 109.48186 * 297.62403 * 25 24 23 46 46 H 1.08996 * 109.48068 * 177.59370 * 25 24 23 47 47 H 1.09001 * 109.47858 * 301.17071 * 27 26 25 48 48 H 1.08990 * 109.49153 * 181.14166 * 27 26 25 49 49 H 1.08995 * 109.52146 * 182.48886 * 28 27 26 50 50 H 1.09005 * 109.52427 * 62.29818 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 7 4.0013 -2.5740 -0.1163 11 6 3.7688 -3.3217 1.1266 12 6 4.6360 -2.7571 2.2221 13 6 4.2957 -1.7621 3.0609 14 6 5.3980 -1.5575 3.9223 15 6 6.3491 -2.4341 3.5532 16 8 5.8820 -3.1581 2.5228 17 6 5.4223 -2.5988 -0.4876 18 6 5.7694 -3.9635 -1.0861 19 1 5.0814 -4.1884 -1.9011 20 8 5.6570 -4.9687 -0.0767 21 6 7.2025 -3.9361 -1.6213 22 8 7.4874 -5.1700 -2.2834 23 6 8.8083 -5.2489 -2.8227 24 6 8.8052 -4.7296 -4.2639 25 6 10.2063 -4.8909 -4.8592 26 8 10.5941 -6.2648 -4.7959 27 6 10.6605 -6.7919 -3.4693 28 6 9.2776 -6.7069 -2.8181 29 1 -0.4850 0.8400 0.0004 30 1 3.8746 -0.7568 0.9302 31 1 3.8752 -0.6071 -0.8435 32 1 2.7204 -3.2350 1.4121 33 1 4.0175 -4.3715 0.9711 34 1 3.3593 -1.2243 3.0750 35 1 5.4649 -0.8338 4.7211 36 1 7.3232 -2.5379 4.0078 37 1 6.0326 -2.4250 0.3987 38 1 5.6194 -1.8189 -1.2231 39 1 6.2421 -4.8324 0.6810 40 1 7.3114 -3.1120 -2.3263 41 1 7.8973 -3.7996 -0.7926 42 1 9.4857 -4.6458 -2.2180 43 1 8.0901 -5.3012 -4.8554 44 1 8.5255 -3.6760 -4.2709 45 1 10.9142 -4.2869 -4.2916 46 1 10.1996 -4.5625 -5.8985 47 1 11.3744 -6.2128 -2.8834 48 1 10.9811 -7.8329 -3.5072 49 1 9.3358 -7.0675 -1.7912 50 1 8.5719 -7.3184 -3.3804 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122698392.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:36 Heat of formation + Delta-G solvation = -120.078017 kcal Electronic energy + Delta-G solvation = -30650.353794 eV Core-core repulsion = 26451.777379 eV Total energy + Delta-G solvation = -4198.576416 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.26708 -39.93080 -38.56106 -37.27464 -35.66074 -32.78412 -32.61185 -32.52457 -31.49305 -30.73251 -29.57198 -27.67361 -25.95229 -24.59582 -23.99094 -23.51917 -21.68742 -21.23696 -20.93287 -20.58782 -19.67254 -17.43620 -17.04555 -16.71617 -16.58133 -16.50925 -16.34234 -15.79078 -15.70900 -15.25399 -15.10305 -14.68395 -14.21070 -14.17054 -14.01212 -13.86816 -13.31038 -13.22012 -12.96055 -12.66148 -12.57296 -12.50838 -12.39342 -12.12297 -11.72137 -11.68294 -11.55266 -11.35290 -11.25979 -10.99918 -10.82816 -10.72464 -10.64650 -10.56239 -10.09399 -10.05097 -9.69810 -9.58818 -9.50378 -9.24294 -8.60780 -8.11962 -7.59858 -6.08677 -4.05905 2.05905 2.99724 3.23865 3.27439 3.32470 3.33806 3.35055 3.52932 4.37762 4.38279 4.41502 4.54824 4.61498 4.61832 4.75228 4.82730 5.00357 5.02149 5.08879 5.12210 5.18405 5.25836 5.27256 5.30271 5.35315 5.37022 5.41993 5.47199 5.50227 5.57373 5.66132 5.81130 5.85541 5.89348 6.03661 6.14991 6.24409 6.39447 6.44483 6.59997 6.72498 6.79858 6.89900 6.91544 7.05574 7.44323 7.55152 7.78866 7.84242 7.88486 8.58988 9.00211 9.52691 11.04330 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.012679 B = 0.002800 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.777511 B = 9998.333652 C =11276.214660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.071 3.929 3 Si 0.870 3.130 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.507 4.507 8 H 0.082 0.918 9 C 0.152 3.848 10 N -0.501 5.501 11 C 0.127 3.873 12 C -0.027 4.027 13 C -0.201 4.201 14 C -0.212 4.212 15 C -0.065 4.065 16 O -0.184 6.184 17 C 0.018 3.982 18 C 0.119 3.881 19 H 0.115 0.885 20 O -0.545 6.545 21 C 0.032 3.968 22 O -0.365 6.365 23 C 0.088 3.912 24 C -0.180 4.180 25 C 0.064 3.936 26 O -0.383 6.383 27 C 0.064 3.936 28 C -0.153 4.153 29 H 0.264 0.736 30 H 0.003 0.997 31 H 0.022 0.978 32 H 0.112 0.888 33 H 0.103 0.897 34 H 0.152 0.848 35 H 0.141 0.859 36 H 0.193 0.807 37 H 0.041 0.959 38 H 0.076 0.924 39 H 0.367 0.633 40 H 0.056 0.944 41 H 0.048 0.952 42 H 0.058 0.942 43 H 0.083 0.917 44 H 0.075 0.925 45 H 0.050 0.950 46 H 0.097 0.903 47 H 0.050 0.950 48 H 0.099 0.901 49 H 0.080 0.920 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.224 -8.763 -1.170 23.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.131 4.131 3 Si 0.697 3.303 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.545 4.545 8 H 0.100 0.900 9 C 0.026 3.974 10 N -0.222 5.222 11 C -0.002 4.002 12 C -0.079 4.079 13 C -0.221 4.221 14 C -0.231 4.231 15 C -0.133 4.133 16 O -0.080 6.080 17 C -0.111 4.111 18 C 0.059 3.941 19 H 0.133 0.867 20 O -0.349 6.349 21 C -0.045 4.045 22 O -0.284 6.284 23 C 0.030 3.970 24 C -0.218 4.218 25 C -0.013 4.013 26 O -0.302 6.302 27 C -0.013 4.013 28 C -0.191 4.191 29 H 0.074 0.926 30 H 0.020 0.980 31 H 0.040 0.960 32 H 0.130 0.870 33 H 0.121 0.879 34 H 0.169 0.831 35 H 0.158 0.842 36 H 0.210 0.790 37 H 0.059 0.941 38 H 0.094 0.906 39 H 0.214 0.786 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.076 0.924 43 H 0.102 0.898 44 H 0.094 0.906 45 H 0.068 0.932 46 H 0.115 0.885 47 H 0.069 0.931 48 H 0.117 0.883 49 H 0.099 0.901 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 21.388 -9.581 -2.327 23.551 hybrid contribution 1.346 2.608 1.524 3.307 sum 22.734 -6.973 -0.803 23.793 Atomic orbital electron populations 1.69883 1.06061 1.26819 1.50914 1.24852 0.94659 0.98637 0.94914 0.86945 0.80396 0.84363 0.78584 1.20210 1.21194 1.19278 1.20978 0.88445 0.94757 1.50362 0.89993 1.20396 0.97374 0.84062 0.95604 1.62271 1.13151 1.17584 1.29182 1.21357 0.97353 0.98918 0.82522 1.24046 0.83914 0.99133 1.00790 1.21851 1.01412 1.00995 0.97838 1.21846 0.94970 1.02967 1.03357 1.23831 1.00459 0.96641 0.92375 1.83992 1.28544 1.52797 1.42699 1.22815 0.91517 0.96861 0.99934 1.21959 0.93318 0.87774 0.91012 0.86722 1.86614 1.65829 1.50203 1.32283 1.23333 0.98308 0.86895 0.95998 1.88029 1.30175 1.36481 1.73688 1.22070 0.85147 0.96637 0.93192 1.22751 0.98852 1.02712 0.97509 1.22559 0.93937 0.82863 1.01936 1.87943 1.88951 1.26014 1.27250 1.22586 0.95278 0.99918 0.83501 1.22285 0.97893 0.96275 1.02622 0.92636 0.97959 0.96045 0.87041 0.87933 0.83074 0.84159 0.78977 0.94136 0.90565 0.78639 0.92598 0.93371 0.92413 0.89848 0.90600 0.93196 0.88476 0.93141 0.88273 0.90111 0.89905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.93 13.96 55.43 0.77 -26.15 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 3 Si 0.87 21.05 27.38 -169.99 -4.65 16.40 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.29 6.68 56.52 0.38 -5.91 16 7 C -0.51 -13.83 9.12 -34.44 -0.31 -14.14 16 8 H 0.08 2.44 7.61 -52.49 -0.40 2.04 16 9 C 0.15 3.51 3.67 -4.98 -0.02 3.49 16 10 N -0.50 -9.91 4.58 -237.52 -1.09 -11.00 16 11 C 0.13 2.34 5.43 -4.98 -0.03 2.31 16 12 C -0.03 -0.47 4.96 -35.63 -0.18 -0.65 16 13 C -0.20 -3.61 9.19 -39.70 -0.36 -3.98 16 14 C -0.21 -3.17 10.91 -39.70 -0.43 -3.61 16 15 C -0.07 -0.86 12.09 29.42 0.36 -0.51 16 16 O -0.18 -2.76 8.68 5.69 0.05 -2.71 16 17 C 0.02 0.29 4.65 -3.83 -0.02 0.27 16 18 C 0.12 1.71 3.46 -26.73 -0.09 1.61 16 19 H 0.12 1.84 8.14 -51.93 -0.42 1.42 16 20 O -0.54 -8.07 10.54 -40.08 -0.42 -8.49 16 21 C 0.03 0.38 5.39 37.16 0.20 0.58 16 22 O -0.36 -4.61 9.96 -40.08 -0.40 -5.01 16 23 C 0.09 0.86 2.70 -26.55 -0.07 0.79 16 24 C -0.18 -1.62 5.76 -26.59 -0.15 -1.78 16 25 C 0.06 0.50 6.84 37.20 0.25 0.76 16 26 O -0.38 -3.67 10.77 -35.23 -0.38 -4.05 16 27 C 0.06 0.48 6.84 37.21 0.25 0.74 16 28 C -0.15 -1.34 5.79 -26.59 -0.15 -1.49 16 29 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.00 0.06 5.13 -51.93 -0.27 -0.20 16 31 H 0.02 0.50 6.85 -51.93 -0.36 0.15 16 32 H 0.11 2.28 7.02 -51.93 -0.36 1.91 16 33 H 0.10 1.78 5.70 -51.93 -0.30 1.48 16 34 H 0.15 2.95 7.99 -52.49 -0.42 2.53 16 35 H 0.14 1.78 8.06 -52.49 -0.42 1.36 16 36 H 0.19 1.70 8.06 -52.49 -0.42 1.28 16 37 H 0.04 0.65 5.64 -51.93 -0.29 0.35 16 38 H 0.08 1.20 7.64 -51.93 -0.40 0.80 16 39 H 0.37 4.68 8.17 45.56 0.37 5.05 16 40 H 0.06 0.60 7.99 -51.93 -0.42 0.19 16 41 H 0.05 0.51 8.09 -51.93 -0.42 0.09 16 42 H 0.06 0.51 7.79 -51.93 -0.40 0.10 16 43 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.08 0.64 7.99 -51.92 -0.42 0.23 16 45 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 46 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 47 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 49 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 50 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 392.20 15.07 5.91 5.91 Total: -1.00 -31.77 392.20 -8.53 -40.29 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -7.46 Total: 8.52 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: -0.86 Total: -13.70 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: -0.32 Total: -37.15 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -1.15 Total: -20.27 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.65 Total: 16.40 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.77 -8.53 -40.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122698392.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.783 kcal (2) G-P(sol) polarization free energy of solvation -31.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds