Wall clock time and date at job start Tue Mar 31 2020 22:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99713 * 2 1 4 4 H 1.48501 * 109.47391 * 270.00211 * 3 2 1 5 5 H 1.48495 * 109.47253 * 30.00357 * 3 2 1 6 6 H 1.48502 * 109.47099 * 150.00569 * 3 2 1 7 7 C 1.37874 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00219 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99937 * 180.02562 * 7 2 1 10 10 N 1.46897 * 109.47228 * 184.78809 * 9 7 2 11 11 C 1.46899 * 111.00144 * 288.37220 * 10 9 7 12 12 C 1.50697 * 109.46906 * 292.52150 * 11 10 9 13 13 C 1.34516 * 125.79271 * 89.71358 * 12 11 10 14 14 C 1.41378 * 106.84270 * 179.89316 * 13 12 11 15 15 C 1.34515 * 106.84366 * 0.36869 * 14 13 12 16 16 O 1.34302 * 125.78926 * 270.02512 * 12 11 10 17 17 C 1.46896 * 111.00132 * 164.41331 * 10 9 7 18 18 C 1.52998 * 109.47382 * 200.38325 * 17 10 9 19 19 H 1.09001 * 109.47231 * 53.45796 * 18 17 10 20 20 O 1.42900 * 109.47116 * 293.45994 * 18 17 10 21 21 C 1.52999 * 109.47179 * 173.46007 * 18 17 10 22 22 O 1.42901 * 109.47215 * 185.00020 * 21 18 17 23 23 C 1.42900 * 114.00391 * 180.02562 * 22 21 18 24 24 C 1.53187 * 109.54051 * 269.55472 * 23 22 21 25 25 C 1.53086 * 109.16313 * 183.15010 * 24 23 22 26 26 O 1.42901 * 109.41800 * 57.60620 * 25 24 23 27 27 C 1.42905 * 114.10070 * 298.84577 * 26 25 24 28 28 C 1.53093 * 109.41496 * 61.15086 * 27 26 25 29 29 H 0.96997 * 120.00372 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.47422 * 64.78309 * 9 7 2 31 31 H 1.09004 * 109.46777 * 304.78744 * 9 7 2 32 32 H 1.09000 * 109.47194 * 52.51919 * 11 10 9 33 33 H 1.08995 * 109.47141 * 172.52418 * 11 10 9 34 34 H 1.08001 * 126.57446 * 0.02562 * 13 12 11 35 35 H 1.07999 * 126.57894 * 180.17181 * 14 13 12 36 36 H 1.07999 * 125.79248 * 179.74908 * 15 14 13 37 37 H 1.09001 * 109.47043 * 80.38652 * 17 10 9 38 38 H 1.09000 * 109.47559 * 320.38345 * 17 10 9 39 39 H 0.96697 * 113.99980 * 299.99907 * 20 18 17 40 40 H 1.08998 * 109.47415 * 304.99925 * 21 18 17 41 41 H 1.09004 * 109.47202 * 65.00459 * 21 18 17 42 42 H 1.09003 * 109.54306 * 29.81548 * 23 22 21 43 43 H 1.08994 * 109.52208 * 303.05423 * 24 23 22 44 44 H 1.09008 * 109.52229 * 63.24441 * 24 23 22 45 45 H 1.09001 * 109.48186 * 297.62403 * 25 24 23 46 46 H 1.08996 * 109.48068 * 177.59370 * 25 24 23 47 47 H 1.09001 * 109.47858 * 301.17071 * 27 26 25 48 48 H 1.08990 * 109.49153 * 181.14166 * 27 26 25 49 49 H 1.08995 * 109.52146 * 182.48886 * 28 27 26 50 50 H 1.09005 * 109.52427 * 62.29818 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 7 4.0013 -2.5740 -0.1163 11 6 3.7688 -3.3217 1.1266 12 6 4.6360 -2.7571 2.2221 13 6 4.2957 -1.7621 3.0609 14 6 5.3980 -1.5575 3.9223 15 6 6.3491 -2.4341 3.5532 16 8 5.8820 -3.1581 2.5228 17 6 5.4223 -2.5988 -0.4876 18 6 5.7694 -3.9635 -1.0861 19 1 5.0814 -4.1884 -1.9011 20 8 5.6570 -4.9687 -0.0767 21 6 7.2025 -3.9361 -1.6213 22 8 7.4874 -5.1700 -2.2834 23 6 8.8083 -5.2489 -2.8227 24 6 8.8052 -4.7296 -4.2639 25 6 10.2063 -4.8909 -4.8592 26 8 10.5941 -6.2648 -4.7959 27 6 10.6605 -6.7919 -3.4693 28 6 9.2776 -6.7069 -2.8181 29 1 -0.4850 0.8400 0.0004 30 1 3.8746 -0.7568 0.9302 31 1 3.8752 -0.6071 -0.8435 32 1 2.7204 -3.2350 1.4121 33 1 4.0175 -4.3715 0.9711 34 1 3.3593 -1.2243 3.0750 35 1 5.4649 -0.8338 4.7211 36 1 7.3232 -2.5379 4.0078 37 1 6.0326 -2.4250 0.3987 38 1 5.6194 -1.8189 -1.2231 39 1 6.2421 -4.8324 0.6810 40 1 7.3114 -3.1120 -2.3263 41 1 7.8973 -3.7996 -0.7926 42 1 9.4857 -4.6458 -2.2180 43 1 8.0901 -5.3012 -4.8554 44 1 8.5255 -3.6760 -4.2709 45 1 10.9142 -4.2869 -4.2916 46 1 10.1996 -4.5625 -5.8985 47 1 11.3744 -6.2128 -2.8834 48 1 10.9811 -7.8329 -3.5072 49 1 9.3358 -7.0675 -1.7912 50 1 8.5719 -7.3184 -3.3804 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122698392.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:35 Heat of formation + Delta-G solvation = -144.127120 kcal Electronic energy + Delta-G solvation = -30651.396642 eV Core-core repulsion = 26451.777379 eV Total energy + Delta-G solvation = -4199.619263 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.49678 -40.65934 -39.69974 -38.32973 -36.96479 -34.62708 -33.84450 -33.55304 -32.11078 -31.91322 -31.11522 -29.27174 -27.15855 -25.68075 -24.89377 -24.50955 -22.90551 -22.53841 -22.38850 -21.32098 -21.03148 -19.07300 -18.12805 -17.96884 -17.71800 -17.65808 -17.09333 -16.78873 -16.75614 -16.56361 -16.00393 -15.85669 -15.67682 -15.44563 -15.13020 -15.06614 -14.58128 -14.22736 -14.21336 -13.93177 -13.75866 -13.68389 -13.60835 -13.29724 -13.25292 -12.80203 -12.68282 -12.51120 -12.36857 -12.32069 -12.23283 -12.05936 -11.94990 -11.69951 -11.55258 -11.36797 -10.82509 -10.78755 -10.73506 -10.63277 -10.44622 -9.39720 -9.14355 -8.27477 -6.29544 0.84939 1.32033 1.33555 1.43735 1.73756 2.13406 2.33025 2.40931 2.94324 3.05426 3.26722 3.47617 3.75067 3.75655 3.89488 3.98015 4.02198 4.05915 4.10587 4.14495 4.18578 4.25650 4.26159 4.34144 4.39136 4.50402 4.51747 4.54220 4.61582 4.69183 4.75744 4.83213 4.84456 4.89952 5.00303 5.04510 5.07225 5.10161 5.12665 5.17087 5.22354 5.29595 5.53151 5.63014 5.92453 6.21108 6.22273 6.26518 6.27454 6.59706 6.76224 6.82160 7.32942 8.89249 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.012679 B = 0.002800 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.777511 B = 9998.333652 C =11276.214660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.012 3.988 3 Si 0.940 3.060 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.253 1.253 7 C -0.508 4.508 8 H 0.039 0.961 9 C 0.165 3.835 10 N -0.518 5.518 11 C 0.136 3.864 12 C -0.039 4.039 13 C -0.224 4.224 14 C -0.231 4.231 15 C -0.036 4.036 16 O -0.178 6.178 17 C 0.023 3.977 18 C 0.127 3.873 19 H 0.091 0.909 20 O -0.557 6.557 21 C 0.040 3.960 22 O -0.389 6.389 23 C 0.082 3.918 24 C -0.178 4.178 25 C 0.063 3.937 26 O -0.404 6.404 27 C 0.064 3.936 28 C -0.151 4.151 29 H 0.266 0.734 30 H 0.002 0.998 31 H 0.025 0.975 32 H 0.077 0.923 33 H 0.113 0.887 34 H 0.122 0.878 35 H 0.162 0.838 36 H 0.246 0.754 37 H 0.050 0.950 38 H 0.082 0.918 39 H 0.377 0.623 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.063 0.937 44 H 0.081 0.919 45 H 0.067 0.933 46 H 0.106 0.894 47 H 0.068 0.932 48 H 0.112 0.888 49 H 0.087 0.913 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.674 -8.034 -0.465 27.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.186 4.186 3 Si 0.764 3.236 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.177 1.177 7 C -0.547 4.547 8 H 0.057 0.943 9 C 0.038 3.962 10 N -0.240 5.240 11 C 0.008 3.992 12 C -0.091 4.091 13 C -0.244 4.244 14 C -0.250 4.250 15 C -0.103 4.103 16 O -0.074 6.074 17 C -0.105 4.105 18 C 0.067 3.933 19 H 0.109 0.891 20 O -0.363 6.363 21 C -0.037 4.037 22 O -0.309 6.309 23 C 0.024 3.976 24 C -0.216 4.216 25 C -0.013 4.013 26 O -0.323 6.323 27 C -0.013 4.013 28 C -0.189 4.189 29 H 0.075 0.925 30 H 0.020 0.980 31 H 0.043 0.957 32 H 0.095 0.905 33 H 0.131 0.869 34 H 0.141 0.859 35 H 0.179 0.821 36 H 0.262 0.738 37 H 0.068 0.932 38 H 0.101 0.899 39 H 0.226 0.774 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.081 0.919 44 H 0.100 0.900 45 H 0.085 0.915 46 H 0.124 0.876 47 H 0.086 0.914 48 H 0.130 0.870 49 H 0.106 0.894 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 25.865 -8.875 -1.622 27.393 hybrid contribution -0.046 2.243 1.368 2.628 sum 25.819 -6.632 -0.254 26.658 Atomic orbital electron populations 1.70044 1.08044 1.27936 1.52794 1.25741 0.95457 1.02747 0.94609 0.85819 0.79390 0.79205 0.79182 1.19030 1.20959 1.17679 1.21199 0.90905 0.93172 1.49404 0.94304 1.20091 0.94403 0.86266 0.95417 1.62155 1.16091 1.15561 1.30181 1.21032 0.95999 0.99367 0.82835 1.23500 0.85074 0.99555 1.00928 1.21851 1.01615 1.01452 0.99518 1.22093 0.94280 1.04655 1.03996 1.24793 1.01385 0.94005 0.90109 1.83990 1.27140 1.52867 1.43401 1.22840 0.89017 0.98254 1.00428 1.21750 0.94869 0.86472 0.90221 0.89093 1.86586 1.66515 1.50331 1.32900 1.23181 0.96483 0.87126 0.96889 1.87998 1.31990 1.36842 1.74059 1.22276 0.84171 0.97518 0.93591 1.22726 0.99293 1.02643 0.96971 1.22659 0.93368 0.82493 1.02786 1.87919 1.88985 1.26931 1.28504 1.22712 0.94680 1.01029 0.82832 1.22284 0.98276 0.95481 1.02852 0.92533 0.98016 0.95674 0.90509 0.86890 0.85946 0.82061 0.73778 0.93179 0.89912 0.77450 0.91410 0.91353 0.90633 0.91868 0.89996 0.91458 0.87598 0.91371 0.87032 0.89435 0.91852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.15 13.96 21.45 0.30 -58.85 16 2 C 0.01 0.68 5.47 84.65 0.46 1.14 16 3 Si 0.94 43.84 27.38 68.60 1.88 45.71 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 6 H -0.25 -11.08 6.68 99.48 0.66 -10.41 16 7 C -0.51 -29.02 9.12 25.60 0.23 -28.79 16 8 H 0.04 2.49 7.61 -2.91 -0.02 2.46 16 9 C 0.17 7.73 3.67 85.56 0.31 8.04 16 10 N -0.52 -20.85 4.58 -905.39 -4.15 -25.00 16 11 C 0.14 5.18 5.43 85.56 0.46 5.65 16 12 C -0.04 -1.33 4.96 24.83 0.12 -1.21 16 13 C -0.22 -8.04 9.19 22.19 0.20 -7.84 16 14 C -0.23 -6.31 10.91 22.19 0.24 -6.07 16 15 C -0.04 -0.79 12.09 66.97 0.81 0.02 16 16 O -0.18 -4.82 8.68 -2.54 -0.02 -4.84 16 17 C 0.02 0.71 4.65 86.30 0.40 1.11 16 18 C 0.13 3.50 3.46 30.59 0.11 3.60 16 19 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 20 O -0.56 -15.89 10.54 -144.34 -1.52 -17.41 16 21 C 0.04 0.86 5.39 71.98 0.39 1.24 16 22 O -0.39 -9.24 9.96 -144.34 -1.44 -10.68 16 23 C 0.08 1.43 2.70 30.71 0.08 1.52 16 24 C -0.18 -2.95 5.76 30.69 0.18 -2.77 16 25 C 0.06 0.86 6.84 72.01 0.49 1.36 16 26 O -0.40 -7.02 10.77 -148.98 -1.60 -8.63 16 27 C 0.06 0.82 6.84 72.01 0.49 1.31 16 28 C -0.15 -2.41 5.79 30.68 0.18 -2.24 16 29 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 30 H 0.00 0.10 5.13 -2.39 -0.01 0.09 16 31 H 0.03 1.16 6.85 -2.38 -0.02 1.14 16 32 H 0.08 3.41 7.02 -2.39 -0.02 3.40 16 33 H 0.11 4.01 5.70 -2.39 -0.01 3.99 16 34 H 0.12 5.04 7.99 -2.91 -0.02 5.02 16 35 H 0.16 3.61 8.06 -2.91 -0.02 3.59 16 36 H 0.25 2.66 8.06 -2.91 -0.02 2.64 16 37 H 0.05 1.47 5.64 -2.39 -0.01 1.45 16 38 H 0.08 2.44 7.64 -2.39 -0.02 2.42 16 39 H 0.38 8.78 8.17 -74.06 -0.61 8.17 16 40 H 0.07 1.27 7.99 -2.39 -0.02 1.25 16 41 H 0.07 1.18 8.09 -2.38 -0.02 1.16 16 42 H 0.08 1.06 7.79 -2.39 -0.02 1.04 16 43 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.08 1.23 7.99 -2.38 -0.02 1.21 16 45 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 48 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 49 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 50 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 Total: -1.00 -72.41 392.20 -1.10 -73.51 By element: Atomic # 1 Polarization: 29.81 SS G_CDS: 0.29 Total: 30.09 kcal Atomic # 6 Polarization: -29.08 SS G_CDS: 5.17 Total: -23.91 kcal Atomic # 7 Polarization: -80.00 SS G_CDS: -3.85 Total: -83.85 kcal Atomic # 8 Polarization: -36.97 SS G_CDS: -4.59 Total: -41.56 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 1.88 Total: 45.71 kcal Total: -72.41 -1.10 -73.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122698392.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.615 kcal (2) G-P(sol) polarization free energy of solvation -72.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds