Wall clock time and date at job start Tue Mar 31 2020 22:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81401 * 103.00139 * 2 1 4 4 H 1.09002 * 109.46921 * 54.99832 * 3 2 1 5 5 C 1.53003 * 109.47288 * 295.00424 * 3 2 1 6 6 C 1.52999 * 109.47186 * 174.99990 * 3 2 1 7 7 N 1.46497 * 109.47309 * 300.00577 * 6 3 2 8 8 C 1.34780 * 120.00031 * 180.02562 * 7 6 3 9 9 O 1.21273 * 119.99822 * 359.97438 * 8 7 6 10 10 C 1.50695 * 119.99639 * 179.97438 * 8 7 6 11 11 C 1.52999 * 109.46918 * 179.97438 * 10 8 7 12 12 C 1.50702 * 109.47451 * 180.02562 * 11 10 8 13 13 C 1.39866 * 126.04287 * 89.96846 * 12 11 10 14 14 C 1.50705 * 125.89802 * 0.03191 * 13 12 11 15 15 N 1.30837 * 108.20458 * 180.02562 * 13 12 11 16 16 N 1.40086 * 108.20700 * 0.02562 * 15 13 12 17 17 C 1.46491 * 126.04129 * 179.97438 * 16 15 13 18 18 C 1.50702 * 109.46957 * 90.02579 * 17 16 15 19 19 H 1.08002 * 120.00299 * 0.02562 * 18 17 16 20 20 C 1.37884 * 119.99942 * 179.72213 * 18 17 16 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 17 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 17 23 23 H 1.48501 * 109.47188 * 90.00793 * 22 20 18 24 24 H 1.48501 * 109.47085 * 210.00372 * 22 20 18 25 25 H 1.48498 * 109.47634 * 330.00608 * 22 20 18 26 26 C 1.34955 * 107.92007 * 0.26426 * 16 15 13 27 27 C 1.50708 * 126.12162 * 179.73553 * 26 16 15 28 28 H 1.09003 * 109.47731 * 59.99600 * 1 2 3 29 29 H 1.09004 * 109.47397 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46974 * 300.00269 * 1 2 3 31 31 H 1.09004 * 109.46951 * 300.00010 * 5 3 2 32 32 H 1.08998 * 109.47183 * 59.99568 * 5 3 2 33 33 H 1.09001 * 109.46886 * 179.97438 * 5 3 2 34 34 H 1.08997 * 109.46981 * 180.02562 * 6 3 2 35 35 H 1.09004 * 109.46812 * 60.00138 * 6 3 2 36 36 H 0.97005 * 119.99776 * 359.97438 * 7 6 3 37 37 H 1.08997 * 109.47366 * 60.00063 * 10 8 7 38 38 H 1.09000 * 109.47755 * 299.99776 * 10 8 7 39 39 H 1.09001 * 109.47356 * 60.00206 * 11 10 8 40 40 H 1.09002 * 109.47319 * 299.99905 * 11 10 8 41 41 H 1.08999 * 109.46544 * 269.99193 * 14 13 12 42 42 H 1.09000 * 109.47294 * 29.99156 * 14 13 12 43 43 H 1.08993 * 109.46794 * 149.99571 * 14 13 12 44 44 H 1.09004 * 109.47166 * 330.02845 * 17 16 15 45 45 H 1.08994 * 109.47507 * 210.02551 * 17 16 15 46 46 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 47 47 H 1.09003 * 109.47042 * 90.02700 * 27 26 16 48 48 H 1.09007 * 109.46511 * 210.02061 * 27 26 16 49 49 H 1.08991 * 109.47237 * 330.02091 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7294 2.2541 0.8418 5 6 1.7427 2.4017 -1.3073 6 6 3.7370 1.9412 0.1257 7 7 4.1959 1.3339 1.3774 8 6 5.5035 1.3666 1.7026 9 8 6.3002 1.8983 0.9587 10 6 5.9754 0.7425 2.9904 11 6 7.4904 0.9160 3.1161 12 6 7.9625 0.2913 4.4037 13 6 8.3769 -1.0339 4.5720 14 6 8.4294 -2.0868 3.4951 15 7 8.7111 -1.2016 5.8258 16 7 8.5192 0.0134 6.4962 17 6 8.7725 0.2631 7.9173 18 6 10.1943 0.7283 8.0999 19 1 10.8440 0.8284 7.2430 20 6 10.6637 1.0322 9.3602 21 7 9.8724 0.9107 10.4036 22 14 12.4237 1.6162 9.5856 23 1 12.4710 3.0968 9.4819 24 1 12.9167 1.1976 10.9224 25 1 13.2824 1.0185 8.5318 26 6 8.0535 0.9115 5.6030 27 6 7.7022 2.3489 5.8890 28 1 -0.3635 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 2.2353 1.9150 -2.1492 32 1 0.6635 2.2779 -1.3969 33 1 1.9876 3.4638 -1.3071 34 1 3.9821 3.0032 0.1262 35 1 4.2295 1.4545 -0.7162 36 1 3.5586 0.9090 1.9726 37 1 5.7306 -0.3196 2.9906 38 1 5.4826 1.2291 3.8321 39 1 7.7357 1.9781 3.1158 40 1 7.9829 0.4291 2.2745 41 1 7.4765 -2.6146 3.4563 42 1 8.6217 -1.6129 2.5326 43 1 9.2279 -2.7945 3.7177 44 1 8.6158 -0.6564 8.4813 45 1 8.0895 1.0318 8.2786 46 1 10.2028 1.1241 11.2903 47 1 8.5813 2.9751 5.7361 48 1 6.9066 2.6692 5.2162 49 1 7.3648 2.4420 6.9211 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130012569.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:47 Heat of formation + Delta-G solvation = 4.178784 kcal Electronic energy + Delta-G solvation = -26587.359798 eV Core-core repulsion = 22869.217184 eV Total energy + Delta-G solvation = -3718.142614 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.59051 -39.69526 -36.25367 -34.34918 -33.37533 -33.02931 -32.46050 -30.30117 -29.37265 -28.93245 -27.40559 -26.02872 -25.83321 -23.64799 -22.48260 -22.06458 -20.28810 -18.77067 -18.60393 -17.31010 -16.92396 -16.66696 -16.41569 -15.73138 -15.47160 -15.07971 -14.60772 -14.41520 -14.18361 -14.10976 -13.84704 -13.55439 -13.28661 -13.11770 -13.03819 -12.88398 -12.77303 -12.49873 -12.43862 -12.25835 -12.05750 -11.95820 -11.76167 -11.70456 -11.60070 -11.31030 -11.22081 -10.94675 -10.79108 -10.67310 -10.34593 -10.24506 -9.87325 -9.70894 -9.56588 -9.24761 -8.63664 -8.17994 -8.14875 -7.43811 -6.25325 -4.32390 1.12819 2.04330 2.65870 2.78221 3.01613 3.21734 3.28229 3.33930 3.44667 3.64742 4.08075 4.30775 4.32059 4.60352 4.63517 4.67925 4.82521 5.04308 5.06144 5.08463 5.22569 5.25273 5.27707 5.32659 5.37738 5.42086 5.47190 5.56713 5.68948 5.81077 5.87187 5.98975 6.02241 6.05465 6.10357 6.20744 6.28205 6.39707 6.50503 6.58741 6.88976 7.05117 7.14660 7.36637 7.55153 7.67800 7.89910 8.08630 8.18203 8.69469 8.77825 9.33911 10.82224 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021025 B = 0.001929 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.412883 B =14508.481804 C =14659.862652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 S -0.246 6.246 3 C -0.074 4.074 4 H 0.094 0.906 5 C -0.146 4.146 6 C 0.140 3.860 7 N -0.735 5.735 8 C 0.515 3.485 9 O -0.541 6.541 10 C -0.133 4.133 11 C -0.010 4.010 12 C -0.268 4.268 13 C 0.051 3.949 14 C -0.065 4.065 15 N -0.297 5.297 16 N -0.325 5.325 17 C 0.257 3.743 18 C -0.534 4.534 19 H 0.064 0.936 20 C 0.065 3.935 21 N -0.892 5.892 22 Si 0.906 3.094 23 H -0.277 1.277 24 H -0.283 1.283 25 H -0.272 1.272 26 C 0.093 3.907 27 C -0.086 4.086 28 H 0.077 0.923 29 H 0.102 0.898 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.405 0.595 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.065 0.935 44 H 0.051 0.949 45 H 0.051 0.949 46 H 0.267 0.733 47 H 0.076 0.924 48 H 0.070 0.930 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.408 2.246 -20.752 29.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 S -0.020 6.020 3 C -0.203 4.203 4 H 0.112 0.888 5 C -0.205 4.205 6 C 0.015 3.985 7 N -0.389 5.389 8 C 0.302 3.698 9 O -0.417 6.417 10 C -0.173 4.173 11 C -0.049 4.049 12 C -0.280 4.280 13 C -0.113 4.113 14 C -0.123 4.123 15 N -0.121 5.121 16 N -0.105 5.105 17 C 0.139 3.861 18 C -0.573 4.573 19 H 0.082 0.918 20 C -0.138 4.138 21 N -0.530 5.530 22 Si 0.733 3.267 23 H -0.203 1.203 24 H -0.209 1.209 25 H -0.197 1.197 26 C -0.039 4.039 27 C -0.144 4.144 28 H 0.096 0.904 29 H 0.120 0.880 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.240 0.760 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.077 0.923 47 H 0.095 0.905 48 H 0.089 0.911 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -18.686 0.964 -20.010 27.395 hybrid contribution -0.635 1.673 0.145 1.796 sum -19.320 2.637 -19.864 27.836 Atomic orbital electron populations 1.23439 0.94417 1.06649 1.04947 1.87200 1.07026 1.10019 1.97778 1.23477 0.99404 0.94966 1.02427 0.88778 1.22021 1.01528 1.01352 0.95646 1.21081 0.90054 0.99360 0.88016 1.46137 1.09223 1.60427 1.23132 1.21055 0.81382 0.79001 0.88329 1.90692 1.53818 1.44607 1.52623 1.21741 0.99270 1.02197 0.94088 1.19388 0.91265 1.00425 0.93848 1.19354 1.19016 0.94684 0.94961 1.21947 1.01063 0.94826 0.93508 1.20028 1.02009 0.95635 0.94660 1.77273 1.24035 1.05100 1.05716 1.49231 1.45317 1.05568 1.10352 1.19644 0.97772 0.98394 0.70276 1.21311 0.96229 1.45974 0.93758 0.91801 1.24933 0.98502 0.95063 0.95348 1.69923 1.36137 1.47862 0.99107 0.86353 0.83686 0.78984 0.77678 1.20318 1.20864 1.19664 1.20776 0.99488 0.93589 0.90030 1.20346 1.01816 0.89750 1.02475 0.90417 0.87975 0.90434 0.90855 0.92010 0.91151 0.90061 0.90584 0.75995 0.88877 0.89094 0.91442 0.91274 0.91565 0.91225 0.91608 0.93092 0.93123 0.92288 0.90485 0.91106 0.90972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.54 10.45 101.05 1.06 0.52 16 2 S -0.25 -1.70 20.99 -107.50 -2.26 -3.96 16 3 C -0.07 -0.41 2.93 -26.73 -0.08 -0.49 16 4 H 0.09 0.46 8.14 -51.92 -0.42 0.04 16 5 C -0.15 -0.63 9.10 37.16 0.34 -0.29 16 6 C 0.14 1.10 5.12 -4.04 -0.02 1.08 16 7 N -0.73 -6.58 5.27 -60.30 -0.32 -6.90 16 8 C 0.51 6.18 7.83 -10.99 -0.09 6.10 16 9 O -0.54 -8.47 15.98 5.56 0.09 -8.38 16 10 C -0.13 -1.56 5.68 -27.89 -0.16 -1.71 16 11 C -0.01 -0.15 4.41 -27.88 -0.12 -0.27 16 12 C -0.27 -4.85 5.35 -105.05 -0.56 -5.42 16 13 C 0.05 0.98 7.22 -82.40 -0.59 0.39 16 14 C -0.06 -0.95 10.26 36.01 0.37 -0.58 16 15 N -0.30 -6.92 12.58 33.67 0.42 -6.50 16 16 N -0.33 -7.66 3.60 -58.31 -0.21 -7.87 16 17 C 0.26 6.64 6.00 -5.20 -0.03 6.61 16 18 C -0.53 -14.89 9.39 -34.44 -0.32 -15.22 16 19 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 20 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 21 N -0.89 -25.26 13.29 55.43 0.74 -24.52 16 22 Si 0.91 21.36 29.54 -169.99 -5.02 16.34 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 26 C 0.09 1.85 6.93 -82.26 -0.57 1.28 16 27 C -0.09 -1.41 9.72 36.01 0.35 -1.06 16 28 H 0.08 0.26 7.14 -51.92 -0.37 -0.11 16 29 H 0.10 0.39 8.14 -51.92 -0.42 -0.03 16 30 H 0.08 0.28 8.14 -51.92 -0.42 -0.14 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.22 6.92 -51.93 -0.36 -0.14 16 33 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.40 2.96 7.97 -40.82 -0.33 2.63 16 37 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.07 1.02 7.75 -51.93 -0.40 0.62 16 40 H 0.07 1.03 7.21 -51.93 -0.37 0.65 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.07 0.90 7.25 -51.93 -0.38 0.52 16 43 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 45 H 0.05 1.29 7.04 -51.93 -0.37 0.93 16 46 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 47 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 48 H 0.07 0.94 7.79 -51.93 -0.40 0.54 16 49 H 0.07 1.22 7.07 -51.93 -0.37 0.85 16 LS Contribution 416.54 15.07 6.28 6.28 Total: -1.00 -33.12 416.54 -9.20 -42.32 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -8.39 Total: 0.57 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: -0.53 Total: -7.38 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: 0.63 Total: -45.79 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: 0.09 Total: -8.38 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.26 Total: -3.96 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -33.12 -9.20 -42.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130012569.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.502 kcal (2) G-P(sol) polarization free energy of solvation -33.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds