Wall clock time and date at job start Tue Mar 31 2020 22:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81401 * 103.00139 * 2 1 4 4 H 1.09002 * 109.46921 * 54.99832 * 3 2 1 5 5 C 1.53003 * 109.47288 * 295.00424 * 3 2 1 6 6 C 1.52999 * 109.47186 * 174.99990 * 3 2 1 7 7 N 1.46497 * 109.47309 * 300.00577 * 6 3 2 8 8 C 1.34780 * 120.00031 * 180.02562 * 7 6 3 9 9 O 1.21273 * 119.99822 * 359.97438 * 8 7 6 10 10 C 1.50695 * 119.99639 * 179.97438 * 8 7 6 11 11 C 1.52999 * 109.46918 * 179.97438 * 10 8 7 12 12 C 1.50702 * 109.47451 * 180.02562 * 11 10 8 13 13 C 1.39866 * 126.04287 * 89.96846 * 12 11 10 14 14 C 1.50705 * 125.89802 * 0.03191 * 13 12 11 15 15 N 1.30837 * 108.20458 * 180.02562 * 13 12 11 16 16 N 1.40086 * 108.20700 * 0.02562 * 15 13 12 17 17 C 1.46491 * 126.04129 * 179.97438 * 16 15 13 18 18 C 1.50702 * 109.46957 * 90.02579 * 17 16 15 19 19 H 1.08002 * 120.00299 * 0.02562 * 18 17 16 20 20 C 1.37884 * 119.99942 * 179.72213 * 18 17 16 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 17 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 17 23 23 H 1.48501 * 109.47188 * 90.00793 * 22 20 18 24 24 H 1.48501 * 109.47085 * 210.00372 * 22 20 18 25 25 H 1.48498 * 109.47634 * 330.00608 * 22 20 18 26 26 C 1.34955 * 107.92007 * 0.26426 * 16 15 13 27 27 C 1.50708 * 126.12162 * 179.73553 * 26 16 15 28 28 H 1.09003 * 109.47731 * 59.99600 * 1 2 3 29 29 H 1.09004 * 109.47397 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46974 * 300.00269 * 1 2 3 31 31 H 1.09004 * 109.46951 * 300.00010 * 5 3 2 32 32 H 1.08998 * 109.47183 * 59.99568 * 5 3 2 33 33 H 1.09001 * 109.46886 * 179.97438 * 5 3 2 34 34 H 1.08997 * 109.46981 * 180.02562 * 6 3 2 35 35 H 1.09004 * 109.46812 * 60.00138 * 6 3 2 36 36 H 0.97005 * 119.99776 * 359.97438 * 7 6 3 37 37 H 1.08997 * 109.47366 * 60.00063 * 10 8 7 38 38 H 1.09000 * 109.47755 * 299.99776 * 10 8 7 39 39 H 1.09001 * 109.47356 * 60.00206 * 11 10 8 40 40 H 1.09002 * 109.47319 * 299.99905 * 11 10 8 41 41 H 1.08999 * 109.46544 * 269.99193 * 14 13 12 42 42 H 1.09000 * 109.47294 * 29.99156 * 14 13 12 43 43 H 1.08993 * 109.46794 * 149.99571 * 14 13 12 44 44 H 1.09004 * 109.47166 * 330.02845 * 17 16 15 45 45 H 1.08994 * 109.47507 * 210.02551 * 17 16 15 46 46 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 47 47 H 1.09003 * 109.47042 * 90.02700 * 27 26 16 48 48 H 1.09007 * 109.46511 * 210.02061 * 27 26 16 49 49 H 1.08991 * 109.47237 * 330.02091 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7294 2.2541 0.8418 5 6 1.7427 2.4017 -1.3073 6 6 3.7370 1.9412 0.1257 7 7 4.1959 1.3339 1.3774 8 6 5.5035 1.3666 1.7026 9 8 6.3002 1.8983 0.9587 10 6 5.9754 0.7425 2.9904 11 6 7.4904 0.9160 3.1161 12 6 7.9625 0.2913 4.4037 13 6 8.3769 -1.0339 4.5720 14 6 8.4294 -2.0868 3.4951 15 7 8.7111 -1.2016 5.8258 16 7 8.5192 0.0134 6.4962 17 6 8.7725 0.2631 7.9173 18 6 10.1943 0.7283 8.0999 19 1 10.8440 0.8284 7.2430 20 6 10.6637 1.0322 9.3602 21 7 9.8724 0.9107 10.4036 22 14 12.4237 1.6162 9.5856 23 1 12.4710 3.0968 9.4819 24 1 12.9167 1.1976 10.9224 25 1 13.2824 1.0185 8.5318 26 6 8.0535 0.9115 5.6030 27 6 7.7022 2.3489 5.8890 28 1 -0.3635 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 2.2353 1.9150 -2.1492 32 1 0.6635 2.2779 -1.3969 33 1 1.9876 3.4638 -1.3071 34 1 3.9821 3.0032 0.1262 35 1 4.2295 1.4545 -0.7162 36 1 3.5586 0.9090 1.9726 37 1 5.7306 -0.3196 2.9906 38 1 5.4826 1.2291 3.8321 39 1 7.7357 1.9781 3.1158 40 1 7.9829 0.4291 2.2745 41 1 7.4765 -2.6146 3.4563 42 1 8.6217 -1.6129 2.5326 43 1 9.2279 -2.7945 3.7177 44 1 8.6158 -0.6564 8.4813 45 1 8.0895 1.0318 8.2786 46 1 10.2028 1.1241 11.2903 47 1 8.5813 2.9751 5.7361 48 1 6.9066 2.6692 5.2162 49 1 7.3648 2.4420 6.9211 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130012569.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:46 Heat of formation + Delta-G solvation = -15.768270 kcal Electronic energy + Delta-G solvation = -26588.224767 eV Core-core repulsion = 22869.217184 eV Total energy + Delta-G solvation = -3719.007584 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.14127 -40.65316 -36.95840 -36.06748 -34.82882 -34.18723 -33.73144 -31.71048 -30.50512 -29.74463 -28.44888 -27.61269 -26.99676 -25.07724 -23.76199 -22.93462 -21.20022 -20.29903 -20.12729 -18.81972 -18.08122 -17.62466 -17.24349 -17.13426 -16.53062 -16.24194 -16.00703 -15.71880 -15.13486 -14.87266 -14.67246 -14.50239 -14.42694 -14.22645 -14.11452 -13.94339 -13.78132 -13.56252 -13.49891 -13.33701 -13.25436 -13.17392 -13.08291 -12.84591 -12.73013 -12.62498 -12.57848 -12.45076 -12.23093 -12.14700 -11.84110 -11.71129 -11.14640 -10.86341 -10.76725 -10.74881 -10.04579 -9.82775 -9.01238 -8.69094 -8.34938 -6.52526 0.69152 1.18635 1.35368 1.36545 1.48060 1.63575 1.73469 1.89831 1.95331 2.31888 2.33359 2.94347 3.57327 3.79923 3.89647 3.94552 4.00380 4.18294 4.24722 4.29363 4.36079 4.37770 4.38898 4.54602 4.59247 4.65059 4.67693 4.73775 4.73814 4.80199 4.85916 4.88314 4.89607 4.91652 4.98234 4.98734 5.05296 5.14794 5.22906 5.32125 5.46204 5.48042 5.50754 5.57451 5.80459 6.06535 6.32897 6.58115 6.62733 7.12706 7.18701 7.31090 8.70984 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021025 B = 0.001929 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.412883 B =14508.481804 C =14659.862652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 S -0.299 6.299 3 C -0.057 4.057 4 H 0.107 0.893 5 C -0.144 4.144 6 C 0.139 3.861 7 N -0.721 5.721 8 C 0.518 3.482 9 O -0.581 6.581 10 C -0.125 4.125 11 C -0.003 4.003 12 C -0.257 4.257 13 C 0.054 3.946 14 C -0.063 4.063 15 N -0.350 5.350 16 N -0.355 5.355 17 C 0.275 3.725 18 C -0.552 4.552 19 H 0.046 0.954 20 C 0.021 3.979 21 N -0.918 5.918 22 Si 0.971 3.029 23 H -0.263 1.263 24 H -0.273 1.273 25 H -0.277 1.277 26 C 0.078 3.922 27 C -0.082 4.082 28 H 0.088 0.912 29 H 0.105 0.895 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.061 0.939 36 H 0.414 0.586 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.064 0.936 44 H 0.019 0.981 45 H 0.048 0.952 46 H 0.274 0.726 47 H 0.076 0.924 48 H 0.107 0.893 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.776 3.161 -22.249 31.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 S -0.074 6.074 3 C -0.186 4.186 4 H 0.125 0.875 5 C -0.203 4.203 6 C 0.014 3.986 7 N -0.374 5.374 8 C 0.306 3.694 9 O -0.461 6.461 10 C -0.165 4.165 11 C -0.042 4.042 12 C -0.269 4.269 13 C -0.111 4.111 14 C -0.121 4.121 15 N -0.174 5.174 16 N -0.135 5.135 17 C 0.156 3.844 18 C -0.591 4.591 19 H 0.065 0.935 20 C -0.180 4.180 21 N -0.556 5.556 22 Si 0.795 3.205 23 H -0.188 1.188 24 H -0.198 1.198 25 H -0.202 1.202 26 C -0.052 4.052 27 C -0.140 4.140 28 H 0.107 0.893 29 H 0.124 0.876 30 H 0.105 0.895 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.079 0.921 36 H 0.252 0.748 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.083 0.917 44 H 0.037 0.963 45 H 0.066 0.934 46 H 0.083 0.917 47 H 0.094 0.906 48 H 0.125 0.875 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -20.110 1.876 -21.517 29.512 hybrid contribution -0.306 1.340 0.505 1.464 sum -20.416 3.216 -21.012 29.473 Atomic orbital electron populations 1.23463 0.91537 1.07249 1.05959 1.87372 1.10316 1.11795 1.97925 1.23392 0.97649 0.93900 1.03669 0.87494 1.22016 1.02148 1.01627 0.94543 1.21136 0.91573 0.99035 0.86828 1.46028 1.08444 1.59456 1.23458 1.21004 0.81941 0.78514 0.87941 1.90684 1.54998 1.46614 1.53818 1.21622 0.97078 1.03222 0.94574 1.19354 0.93387 0.99807 0.91696 1.19718 1.17551 0.94084 0.95551 1.22773 0.98789 0.96439 0.93099 1.20206 1.03386 0.94713 0.93830 1.77207 1.26646 1.05893 1.07675 1.48996 1.47862 1.06777 1.09894 1.19126 0.96838 0.96405 0.72053 1.21426 0.97125 1.46893 0.93626 0.93548 1.25751 1.02579 0.94798 0.94841 1.70003 1.37919 1.48072 0.99601 0.85357 0.78436 0.79073 0.77638 1.18826 1.19769 1.20231 1.21468 0.98946 0.94639 0.90118 1.20444 1.02902 0.87781 1.02918 0.89320 0.87611 0.89474 0.91602 0.90828 0.90243 0.89948 0.92085 0.74826 0.87609 0.87714 0.91722 0.91230 0.89114 0.89097 0.91705 0.96312 0.93449 0.91731 0.90579 0.87471 0.91822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.71 10.45 113.37 1.18 0.48 16 2 S -0.30 -3.67 20.99 -56.49 -1.19 -4.85 16 3 C -0.06 -0.53 2.93 30.59 0.09 -0.44 16 4 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 5 C -0.14 -0.94 9.10 71.98 0.66 -0.29 16 6 C 0.14 1.98 5.12 86.38 0.44 2.43 16 7 N -0.72 -11.52 5.27 -463.08 -2.44 -13.96 16 8 C 0.52 11.48 7.83 87.65 0.69 12.17 16 9 O -0.58 -17.52 15.98 -3.01 -0.05 -17.57 16 10 C -0.13 -2.62 5.68 29.85 0.17 -2.46 16 11 C 0.00 -0.09 4.41 29.85 0.13 0.04 16 12 C -0.26 -9.07 5.35 -20.14 -0.11 -9.18 16 13 C 0.05 2.05 7.22 43.10 0.31 2.36 16 14 C -0.06 -1.73 10.26 71.24 0.73 -1.00 16 15 N -0.35 -16.73 12.58 -47.38 -0.60 -17.32 16 16 N -0.36 -17.28 3.60 -338.41 -1.22 -18.49 16 17 C 0.28 14.89 6.00 85.64 0.51 15.41 16 18 C -0.55 -31.81 9.39 25.60 0.24 -31.57 16 19 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 20 C 0.02 1.19 5.46 84.66 0.46 1.65 16 21 N -0.92 -52.71 13.29 21.45 0.28 -52.42 16 22 Si 0.97 44.02 29.54 68.60 2.03 46.05 16 23 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 24 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 25 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 26 C 0.08 3.13 6.93 41.41 0.29 3.41 16 27 C -0.08 -2.67 9.72 71.24 0.69 -1.98 16 28 H 0.09 0.37 7.14 -2.39 -0.02 0.35 16 29 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 32 H 0.07 0.33 6.92 -2.39 -0.02 0.31 16 33 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 36 H 0.41 5.09 7.97 -92.70 -0.74 4.35 16 37 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.06 1.84 7.75 -2.39 -0.02 1.82 16 40 H 0.07 1.93 7.21 -2.39 -0.02 1.92 16 41 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.09 2.11 7.25 -2.39 -0.02 2.10 16 43 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.02 1.11 8.14 -2.38 -0.02 1.09 16 45 H 0.05 2.54 7.04 -2.39 -0.02 2.52 16 46 H 0.27 14.63 8.31 -92.70 -0.77 13.86 16 47 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 48 H 0.11 2.62 7.79 -2.38 -0.02 2.60 16 49 H 0.06 2.16 7.07 -2.39 -0.02 2.14 16 Total: -1.00 -74.00 416.54 3.51 -70.49 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: 0.20 Total: 17.07 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: 6.49 Total: -8.98 kcal Atomic # 7 Polarization: -98.23 SS G_CDS: -3.97 Total: -102.20 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -0.05 Total: -17.57 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 16 Polarization: -3.67 SS G_CDS: -1.19 Total: -4.85 kcal Total: -74.00 3.51 -70.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130012569.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.720 kcal (2) G-P(sol) polarization free energy of solvation -74.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds