Wall clock time and date at job start Tue Mar 31 2020 22:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81409 * 1 3 3 C 1.81399 * 102.99779 * 2 1 4 4 H 1.09002 * 109.47098 * 304.99914 * 3 2 1 5 5 C 1.52997 * 109.47065 * 64.99903 * 3 2 1 6 6 C 1.52997 * 109.47139 * 185.00014 * 3 2 1 7 7 N 1.46496 * 109.47194 * 59.99807 * 6 3 2 8 8 C 1.34777 * 120.00271 * 179.97438 * 7 6 3 9 9 O 1.21278 * 119.99854 * 0.02562 * 8 7 6 10 10 C 1.50703 * 120.00161 * 180.02562 * 8 7 6 11 11 C 1.53000 * 109.46912 * 180.02562 * 10 8 7 12 12 C 1.50703 * 109.46912 * 179.97438 * 11 10 8 13 13 C 1.39864 * 126.04218 * 269.69185 * 12 11 10 14 14 C 1.50704 * 125.89557 * 359.97438 * 13 12 11 15 15 N 1.30840 * 108.20539 * 179.81957 * 13 12 11 16 16 N 1.40087 * 108.20295 * 0.43272 * 15 13 12 17 17 C 1.46495 * 126.03649 * 179.74008 * 16 15 13 18 18 C 1.50710 * 109.47349 * 269.97692 * 17 16 15 19 19 H 1.08001 * 119.99563 * 0.02562 * 18 17 16 20 20 C 1.37871 * 119.99797 * 179.97438 * 18 17 16 21 21 N 1.31507 * 120.00369 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 119.99480 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47267 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.46872 * 120.00019 * 22 20 18 25 25 H 1.48498 * 109.47093 * 239.99932 * 22 20 18 26 26 C 1.34953 * 107.92453 * 359.72394 * 16 15 13 27 27 C 1.50697 * 126.12520 * 179.97438 * 26 16 15 28 28 H 1.09002 * 109.46906 * 60.00228 * 1 2 3 29 29 H 1.08996 * 109.46886 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47492 * 299.99949 * 1 2 3 31 31 H 1.09000 * 109.47611 * 299.99558 * 5 3 2 32 32 H 1.09002 * 109.47153 * 60.00046 * 5 3 2 33 33 H 1.09001 * 109.47289 * 180.02562 * 5 3 2 34 34 H 1.09002 * 109.47045 * 299.99933 * 6 3 2 35 35 H 1.09001 * 109.47375 * 179.97438 * 6 3 2 36 36 H 0.97005 * 120.00266 * 0.02562 * 7 6 3 37 37 H 1.09002 * 109.47152 * 60.00245 * 10 8 7 38 38 H 1.09001 * 109.46980 * 300.00345 * 10 8 7 39 39 H 1.09001 * 109.47194 * 299.99742 * 11 10 8 40 40 H 1.08992 * 109.47399 * 59.99914 * 11 10 8 41 41 H 1.09003 * 109.46589 * 90.00704 * 14 13 12 42 42 H 1.08997 * 109.47308 * 210.00148 * 14 13 12 43 43 H 1.08996 * 109.47620 * 330.00759 * 14 13 12 44 44 H 1.09000 * 109.47588 * 29.97879 * 17 16 15 45 45 H 1.08998 * 109.47014 * 149.98062 * 17 16 15 46 46 H 0.96999 * 119.99917 * 180.02562 * 21 20 18 47 47 H 1.08998 * 109.47891 * 270.02366 * 27 26 16 48 48 H 1.08999 * 109.47011 * 30.02897 * 27 26 16 49 49 H 1.09002 * 109.47228 * 150.02361 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 -0.8418 5 6 1.7428 2.4015 1.3073 6 6 3.7369 1.9412 -0.1257 7 7 4.1959 1.3341 -1.3775 8 6 5.5034 1.3669 -1.7027 9 8 6.3002 1.8986 -0.9588 10 6 5.9754 0.7428 -2.9907 11 6 7.4904 0.9165 -3.1163 12 6 7.9625 0.2918 -4.4040 13 6 8.3831 -1.0316 -4.5709 14 6 8.4436 -2.0822 -3.4922 15 7 8.7119 -1.2007 -5.8260 16 7 8.5200 0.0143 -6.4962 17 6 8.7737 0.2641 -7.9173 18 6 10.1955 0.7295 -8.0995 19 1 10.8452 0.8287 -7.2425 20 6 10.6670 1.0274 -9.3604 21 7 9.8760 0.9061 -10.4039 22 14 12.4296 1.6035 -9.5863 23 1 13.1066 1.6555 -8.2656 24 1 13.1501 0.6561 -10.4744 25 1 12.4336 2.9564 -10.1987 26 6 8.0598 0.9139 -5.6017 27 6 7.7163 2.3534 -5.8858 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 0.6635 2.2779 1.3969 32 1 2.2354 1.9149 2.1492 33 1 1.9875 3.4637 1.3072 34 1 4.2296 1.4546 0.7161 35 1 3.9821 3.0033 -0.1262 36 1 3.5586 0.9091 -1.9727 37 1 5.4825 1.2295 -3.8323 38 1 5.7305 -0.3193 -2.9909 39 1 7.7356 1.9785 -3.1159 40 1 7.9829 0.4295 -2.2747 41 1 7.4934 -2.6148 -3.4502 42 1 9.2451 -2.7864 -3.7154 43 1 8.6358 -1.6056 -2.5310 44 1 8.6172 -0.6552 -8.4815 45 1 8.0907 1.0329 -8.2786 46 1 10.2079 1.1153 -11.2910 47 1 8.5989 2.9746 -5.7336 48 1 7.3780 2.4494 -6.9175 49 1 6.9233 2.6776 -5.2119 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130012757.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:50 Heat of formation + Delta-G solvation = 4.117656 kcal Electronic energy + Delta-G solvation = -26585.789856 eV Core-core repulsion = 22867.644590 eV Total energy + Delta-G solvation = -3718.145265 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.58945 -39.69435 -36.25359 -34.34882 -33.37490 -33.02953 -32.46182 -30.30303 -29.37268 -28.93304 -27.40417 -26.02799 -25.83446 -23.64874 -22.48317 -22.06546 -20.28773 -18.76954 -18.60287 -17.31017 -16.92408 -16.67058 -16.41546 -15.73064 -15.47168 -15.07909 -14.60944 -14.41436 -14.18140 -14.10830 -13.84643 -13.55379 -13.28682 -13.11704 -13.03749 -12.88418 -12.77363 -12.50310 -12.43927 -12.25784 -12.05680 -11.95764 -11.76216 -11.70446 -11.60170 -11.31458 -11.21861 -10.92969 -10.80678 -10.67334 -10.34589 -10.25028 -9.87203 -9.69037 -9.56657 -9.24741 -8.64372 -8.17991 -8.14720 -7.43811 -6.25597 -4.32651 1.12836 2.04314 2.65900 2.78221 3.01552 3.20596 3.28538 3.34583 3.44714 3.64976 4.08082 4.30593 4.32089 4.60417 4.63519 4.67953 4.82551 5.04310 5.06164 5.08299 5.22610 5.25332 5.27710 5.32643 5.38009 5.42109 5.47208 5.56744 5.69051 5.81246 5.87240 5.99044 6.02242 6.05704 6.10407 6.20782 6.28254 6.39881 6.50570 6.58809 6.89087 7.05100 7.14624 7.36649 7.55160 7.67837 7.89707 8.08534 8.18235 8.69553 8.77903 9.33835 10.82007 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021046 B = 0.001928 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.104364 B =14516.536833 C =14665.429152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 S -0.246 6.246 3 C -0.074 4.074 4 H 0.094 0.906 5 C -0.146 4.146 6 C 0.140 3.860 7 N -0.735 5.735 8 C 0.515 3.485 9 O -0.541 6.541 10 C -0.133 4.133 11 C -0.010 4.010 12 C -0.268 4.268 13 C 0.051 3.949 14 C -0.065 4.065 15 N -0.297 5.297 16 N -0.325 5.325 17 C 0.257 3.743 18 C -0.534 4.534 19 H 0.064 0.936 20 C 0.065 3.935 21 N -0.892 5.892 22 Si 0.906 3.094 23 H -0.271 1.271 24 H -0.281 1.281 25 H -0.281 1.281 26 C 0.093 3.907 27 C -0.086 4.086 28 H 0.077 0.923 29 H 0.102 0.898 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.405 0.595 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.051 0.949 45 H 0.051 0.949 46 H 0.267 0.733 47 H 0.077 0.923 48 H 0.071 0.929 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.383 2.256 20.771 29.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 S -0.020 6.020 3 C -0.203 4.203 4 H 0.112 0.888 5 C -0.205 4.205 6 C 0.015 3.985 7 N -0.389 5.389 8 C 0.302 3.698 9 O -0.417 6.417 10 C -0.173 4.173 11 C -0.049 4.049 12 C -0.280 4.280 13 C -0.113 4.113 14 C -0.123 4.123 15 N -0.121 5.121 16 N -0.105 5.105 17 C 0.139 3.861 18 C -0.572 4.572 19 H 0.083 0.917 20 C -0.139 4.139 21 N -0.530 5.530 22 Si 0.733 3.267 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.207 1.207 26 C -0.039 4.039 27 C -0.144 4.144 28 H 0.096 0.904 29 H 0.120 0.880 30 H 0.096 0.904 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.240 0.760 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.077 0.923 47 H 0.095 0.905 48 H 0.090 0.910 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -18.668 0.975 20.032 27.400 hybrid contribution -0.630 1.655 -0.159 1.778 sum -19.298 2.630 19.874 27.826 Atomic orbital electron populations 1.23438 0.94412 1.06649 1.04945 1.87202 1.07031 1.10017 1.97779 1.23475 0.99404 0.94968 1.02426 0.88777 1.22020 1.01529 1.01353 0.95646 1.21081 0.90054 0.99360 0.88014 1.46136 1.09225 1.60429 1.23127 1.21060 0.81383 0.78999 0.88332 1.90693 1.53815 1.44610 1.52628 1.21741 0.99263 1.02196 0.94081 1.19387 0.91276 1.00422 0.93842 1.19354 1.18947 0.94711 0.95022 1.21945 1.01020 0.94879 0.93486 1.20028 1.02008 0.95662 0.94635 1.77273 1.24074 1.05140 1.05653 1.49231 1.45472 1.05465 1.10310 1.19651 0.97787 0.98395 0.70287 1.21353 0.96177 1.45947 0.93745 0.91741 1.24930 0.98509 0.95060 0.95352 1.69925 1.36021 1.48033 0.99053 0.86307 0.83666 0.78334 0.78428 1.19550 1.20638 1.20660 1.20771 0.99493 0.93541 0.90047 1.20344 1.01861 0.89700 1.02480 0.90438 0.87977 0.90411 0.92010 0.90853 0.91154 0.90584 0.90063 0.75995 0.89093 0.88877 0.91444 0.91278 0.91571 0.91606 0.91222 0.93085 0.93118 0.92336 0.90475 0.90974 0.91109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.54 10.45 101.05 1.06 0.52 16 2 S -0.25 -1.70 21.00 -107.50 -2.26 -3.96 16 3 C -0.07 -0.41 2.93 -26.73 -0.08 -0.49 16 4 H 0.09 0.46 8.14 -51.92 -0.42 0.04 16 5 C -0.15 -0.63 9.10 37.16 0.34 -0.29 16 6 C 0.14 1.10 5.12 -4.05 -0.02 1.08 16 7 N -0.73 -6.59 5.27 -60.30 -0.32 -6.90 16 8 C 0.51 6.19 7.83 -10.98 -0.09 6.10 16 9 O -0.54 -8.48 15.98 5.56 0.09 -8.39 16 10 C -0.13 -1.55 5.68 -27.88 -0.16 -1.71 16 11 C -0.01 -0.15 4.41 -27.88 -0.12 -0.27 16 12 C -0.27 -4.86 5.35 -105.05 -0.56 -5.42 16 13 C 0.05 0.99 7.22 -82.40 -0.59 0.39 16 14 C -0.06 -0.95 10.26 36.01 0.37 -0.58 16 15 N -0.30 -6.92 12.58 33.67 0.42 -6.50 16 16 N -0.33 -7.66 3.60 -58.31 -0.21 -7.87 16 17 C 0.26 6.63 6.00 -5.19 -0.03 6.60 16 18 C -0.53 -14.88 9.39 -34.44 -0.32 -15.20 16 19 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 20 C 0.06 1.78 5.46 -17.83 -0.10 1.68 16 21 N -0.89 -25.26 13.29 55.43 0.74 -24.53 16 22 Si 0.91 21.36 29.54 -169.99 -5.02 16.34 16 23 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 C 0.09 1.86 6.93 -82.26 -0.57 1.29 16 27 C -0.09 -1.42 9.72 36.00 0.35 -1.06 16 28 H 0.08 0.28 8.14 -51.92 -0.42 -0.14 16 29 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.26 7.14 -51.93 -0.37 -0.11 16 31 H 0.06 0.22 6.92 -51.93 -0.36 -0.14 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.40 2.96 7.97 -40.82 -0.33 2.63 16 37 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.07 1.02 7.73 -51.93 -0.40 0.62 16 40 H 0.07 1.03 7.20 -51.93 -0.37 0.65 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.07 0.90 7.25 -51.93 -0.38 0.52 16 44 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 45 H 0.05 1.29 7.05 -51.93 -0.37 0.93 16 46 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 47 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 48 H 0.07 1.22 7.08 -51.93 -0.37 0.85 16 49 H 0.07 0.94 7.77 -51.93 -0.40 0.54 16 LS Contribution 416.49 15.07 6.28 6.28 Total: -1.00 -33.15 416.49 -9.20 -42.35 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -8.39 Total: 0.55 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: -0.53 Total: -7.37 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: 0.63 Total: -45.80 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: 0.09 Total: -8.39 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.26 Total: -3.96 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -33.15 -9.20 -42.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130012757.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.468 kcal (2) G-P(sol) polarization free energy of solvation -33.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds