Wall clock time and date at job start Tue Mar 31 2020 22:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81409 * 1 3 3 C 1.81399 * 102.99779 * 2 1 4 4 H 1.09002 * 109.47098 * 304.99914 * 3 2 1 5 5 C 1.52997 * 109.47065 * 64.99903 * 3 2 1 6 6 C 1.52997 * 109.47139 * 185.00014 * 3 2 1 7 7 N 1.46496 * 109.47194 * 59.99807 * 6 3 2 8 8 C 1.34777 * 120.00271 * 179.97438 * 7 6 3 9 9 O 1.21278 * 119.99854 * 0.02562 * 8 7 6 10 10 C 1.50703 * 120.00161 * 180.02562 * 8 7 6 11 11 C 1.53000 * 109.46912 * 180.02562 * 10 8 7 12 12 C 1.50703 * 109.46912 * 179.97438 * 11 10 8 13 13 C 1.39864 * 126.04218 * 269.69185 * 12 11 10 14 14 C 1.50704 * 125.89557 * 359.97438 * 13 12 11 15 15 N 1.30840 * 108.20539 * 179.81957 * 13 12 11 16 16 N 1.40087 * 108.20295 * 0.43272 * 15 13 12 17 17 C 1.46495 * 126.03649 * 179.74008 * 16 15 13 18 18 C 1.50710 * 109.47349 * 269.97692 * 17 16 15 19 19 H 1.08001 * 119.99563 * 0.02562 * 18 17 16 20 20 C 1.37871 * 119.99797 * 179.97438 * 18 17 16 21 21 N 1.31507 * 120.00369 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 119.99480 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47267 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.46872 * 120.00019 * 22 20 18 25 25 H 1.48498 * 109.47093 * 239.99932 * 22 20 18 26 26 C 1.34953 * 107.92453 * 359.72394 * 16 15 13 27 27 C 1.50697 * 126.12520 * 179.97438 * 26 16 15 28 28 H 1.09002 * 109.46906 * 60.00228 * 1 2 3 29 29 H 1.08996 * 109.46886 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47492 * 299.99949 * 1 2 3 31 31 H 1.09000 * 109.47611 * 299.99558 * 5 3 2 32 32 H 1.09002 * 109.47153 * 60.00046 * 5 3 2 33 33 H 1.09001 * 109.47289 * 180.02562 * 5 3 2 34 34 H 1.09002 * 109.47045 * 299.99933 * 6 3 2 35 35 H 1.09001 * 109.47375 * 179.97438 * 6 3 2 36 36 H 0.97005 * 120.00266 * 0.02562 * 7 6 3 37 37 H 1.09002 * 109.47152 * 60.00245 * 10 8 7 38 38 H 1.09001 * 109.46980 * 300.00345 * 10 8 7 39 39 H 1.09001 * 109.47194 * 299.99742 * 11 10 8 40 40 H 1.08992 * 109.47399 * 59.99914 * 11 10 8 41 41 H 1.09003 * 109.46589 * 90.00704 * 14 13 12 42 42 H 1.08997 * 109.47308 * 210.00148 * 14 13 12 43 43 H 1.08996 * 109.47620 * 330.00759 * 14 13 12 44 44 H 1.09000 * 109.47588 * 29.97879 * 17 16 15 45 45 H 1.08998 * 109.47014 * 149.98062 * 17 16 15 46 46 H 0.96999 * 119.99917 * 180.02562 * 21 20 18 47 47 H 1.08998 * 109.47891 * 270.02366 * 27 26 16 48 48 H 1.08999 * 109.47011 * 30.02897 * 27 26 16 49 49 H 1.09002 * 109.47228 * 150.02361 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 -0.8418 5 6 1.7428 2.4015 1.3073 6 6 3.7369 1.9412 -0.1257 7 7 4.1959 1.3341 -1.3775 8 6 5.5034 1.3669 -1.7027 9 8 6.3002 1.8986 -0.9588 10 6 5.9754 0.7428 -2.9907 11 6 7.4904 0.9165 -3.1163 12 6 7.9625 0.2918 -4.4040 13 6 8.3831 -1.0316 -4.5709 14 6 8.4436 -2.0822 -3.4922 15 7 8.7119 -1.2007 -5.8260 16 7 8.5200 0.0143 -6.4962 17 6 8.7737 0.2641 -7.9173 18 6 10.1955 0.7295 -8.0995 19 1 10.8452 0.8287 -7.2425 20 6 10.6670 1.0274 -9.3604 21 7 9.8760 0.9061 -10.4039 22 14 12.4296 1.6035 -9.5863 23 1 13.1066 1.6555 -8.2656 24 1 13.1501 0.6561 -10.4744 25 1 12.4336 2.9564 -10.1987 26 6 8.0598 0.9139 -5.6017 27 6 7.7163 2.3534 -5.8858 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 0.6635 2.2779 1.3969 32 1 2.2354 1.9149 2.1492 33 1 1.9875 3.4637 1.3072 34 1 4.2296 1.4546 0.7161 35 1 3.9821 3.0033 -0.1262 36 1 3.5586 0.9091 -1.9727 37 1 5.4825 1.2295 -3.8323 38 1 5.7305 -0.3193 -2.9909 39 1 7.7356 1.9785 -3.1159 40 1 7.9829 0.4295 -2.2747 41 1 7.4934 -2.6148 -3.4502 42 1 9.2451 -2.7864 -3.7154 43 1 8.6358 -1.6056 -2.5310 44 1 8.6172 -0.6552 -8.4815 45 1 8.0907 1.0329 -8.2786 46 1 10.2079 1.1153 -11.2910 47 1 8.5989 2.9746 -5.7336 48 1 7.3780 2.4494 -6.9175 49 1 6.9233 2.6776 -5.2119 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130012757.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:49 Heat of formation + Delta-G solvation = -15.853488 kcal Electronic energy + Delta-G solvation = -26586.655869 eV Core-core repulsion = 22867.644590 eV Total energy + Delta-G solvation = -3719.011279 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.14070 -40.65262 -36.95875 -36.06877 -34.82864 -34.18816 -33.73210 -31.71257 -30.50665 -29.74475 -28.44756 -27.61450 -26.99712 -25.07899 -23.76305 -22.93494 -21.20067 -20.29858 -20.12620 -18.82423 -18.08217 -17.62505 -17.24439 -17.13449 -16.53045 -16.24119 -16.00700 -15.71810 -15.13557 -14.87313 -14.67137 -14.50775 -14.42878 -14.22852 -14.11480 -13.94288 -13.78086 -13.56245 -13.49882 -13.33836 -13.25512 -13.17424 -13.08326 -12.84871 -12.72538 -12.62889 -12.58262 -12.45100 -12.24047 -12.14690 -11.84075 -11.69035 -11.14822 -10.86310 -10.76750 -10.75595 -10.04612 -9.82676 -9.01309 -8.69122 -8.35213 -6.52814 0.69145 1.18528 1.34201 1.36305 1.48879 1.63538 1.73434 1.89487 1.95876 2.31810 2.33109 2.94083 3.57301 3.79918 3.89663 3.94617 4.00356 4.18293 4.24719 4.29339 4.36136 4.37837 4.38908 4.54595 4.59323 4.65048 4.67777 4.73727 4.73794 4.80194 4.85958 4.88346 4.89607 4.91604 4.98245 4.98747 5.05288 5.14811 5.22918 5.32185 5.46233 5.48054 5.50801 5.57412 5.80239 6.06493 6.32833 6.58064 6.62819 7.12639 7.18610 7.31058 8.70927 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021046 B = 0.001928 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.104364 B =14516.536833 C =14665.429152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 S -0.299 6.299 3 C -0.057 4.057 4 H 0.107 0.893 5 C -0.144 4.144 6 C 0.139 3.861 7 N -0.721 5.721 8 C 0.518 3.482 9 O -0.581 6.581 10 C -0.125 4.125 11 C -0.003 4.003 12 C -0.257 4.257 13 C 0.054 3.946 14 C -0.063 4.063 15 N -0.350 5.350 16 N -0.355 5.355 17 C 0.275 3.725 18 C -0.552 4.552 19 H 0.046 0.954 20 C 0.021 3.979 21 N -0.918 5.918 22 Si 0.971 3.029 23 H -0.275 1.275 24 H -0.274 1.274 25 H -0.265 1.265 26 C 0.078 3.922 27 C -0.082 4.082 28 H 0.086 0.914 29 H 0.105 0.895 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.061 0.939 35 H 0.082 0.918 36 H 0.414 0.586 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.090 0.910 42 H 0.064 0.936 43 H 0.090 0.910 44 H 0.019 0.981 45 H 0.048 0.952 46 H 0.274 0.726 47 H 0.076 0.924 48 H 0.063 0.937 49 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.743 3.141 22.249 31.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 S -0.074 6.074 3 C -0.186 4.186 4 H 0.125 0.875 5 C -0.203 4.203 6 C 0.014 3.986 7 N -0.374 5.374 8 C 0.306 3.694 9 O -0.461 6.461 10 C -0.165 4.165 11 C -0.042 4.042 12 C -0.269 4.269 13 C -0.111 4.111 14 C -0.121 4.121 15 N -0.174 5.174 16 N -0.135 5.135 17 C 0.155 3.845 18 C -0.590 4.590 19 H 0.065 0.935 20 C -0.180 4.180 21 N -0.556 5.556 22 Si 0.795 3.205 23 H -0.200 1.200 24 H -0.199 1.199 25 H -0.190 1.190 26 C -0.052 4.052 27 C -0.140 4.140 28 H 0.105 0.895 29 H 0.124 0.876 30 H 0.107 0.893 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.079 0.921 35 H 0.101 0.899 36 H 0.252 0.748 37 H 0.123 0.877 38 H 0.124 0.876 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.109 0.891 42 H 0.083 0.917 43 H 0.109 0.891 44 H 0.037 0.963 45 H 0.066 0.934 46 H 0.083 0.917 47 H 0.094 0.906 48 H 0.082 0.918 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -20.083 1.856 21.520 29.494 hybrid contribution -0.303 1.332 -0.514 1.460 sum -20.387 3.188 21.006 29.445 Atomic orbital electron populations 1.23463 0.91529 1.07249 1.05959 1.87374 1.10324 1.11794 1.97926 1.23390 0.97648 0.93900 1.03670 0.87493 1.22015 1.02150 1.01629 0.94542 1.21137 0.91575 0.99036 0.86824 1.46027 1.08445 1.59457 1.23454 1.21008 0.81942 0.78513 0.87943 1.90685 1.54995 1.46617 1.53823 1.21622 0.97076 1.03216 0.94568 1.19354 0.93395 0.99807 0.91693 1.19718 1.17482 0.94108 0.95607 1.22773 0.98759 0.96480 0.93086 1.20206 1.03376 0.94759 0.93794 1.77208 1.26680 1.05922 1.07604 1.48998 1.48007 1.06674 1.09854 1.19133 0.96845 0.96411 0.72062 1.21458 0.97068 1.46874 0.93590 0.93549 1.25745 1.02588 0.94782 0.94849 1.70003 1.37811 1.48241 0.99573 0.85309 0.78504 0.78544 0.78119 1.19961 1.19925 1.19019 1.21465 0.98960 0.94599 0.90137 1.20441 1.02939 0.87732 1.02934 0.89477 0.87614 0.89313 0.90827 0.91602 0.90244 0.92084 0.89947 0.74827 0.87718 0.87615 0.91722 0.91229 0.89127 0.91693 0.89097 0.96292 0.93445 0.91728 0.90580 0.91814 0.87478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.71 10.45 113.37 1.19 0.48 16 2 S -0.30 -3.67 21.00 -56.49 -1.19 -4.86 16 3 C -0.06 -0.53 2.93 30.59 0.09 -0.44 16 4 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 5 C -0.14 -0.95 9.10 71.98 0.66 -0.29 16 6 C 0.14 1.99 5.12 86.38 0.44 2.43 16 7 N -0.72 -11.53 5.27 -463.07 -2.44 -13.97 16 8 C 0.52 11.49 7.83 87.66 0.69 12.18 16 9 O -0.58 -17.53 15.98 -3.02 -0.05 -17.58 16 10 C -0.12 -2.63 5.68 29.85 0.17 -2.46 16 11 C 0.00 -0.10 4.41 29.85 0.13 0.04 16 12 C -0.26 -9.08 5.35 -20.14 -0.11 -9.19 16 13 C 0.05 2.05 7.22 43.10 0.31 2.36 16 14 C -0.06 -1.73 10.26 71.24 0.73 -1.00 16 15 N -0.35 -16.72 12.58 -47.38 -0.60 -17.31 16 16 N -0.36 -17.28 3.60 -338.40 -1.22 -18.50 16 17 C 0.27 14.88 6.00 85.64 0.51 15.39 16 18 C -0.55 -31.77 9.39 25.60 0.24 -31.53 16 19 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 20 C 0.02 1.19 5.46 84.65 0.46 1.65 16 21 N -0.92 -52.72 13.29 21.44 0.28 -52.43 16 22 Si 0.97 44.05 29.54 68.60 2.03 46.08 16 23 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 24 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 25 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 26 C 0.08 3.13 6.93 41.40 0.29 3.42 16 27 C -0.08 -2.68 9.72 71.23 0.69 -1.98 16 28 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.09 0.37 7.14 -2.39 -0.02 0.35 16 31 H 0.07 0.33 6.92 -2.39 -0.02 0.31 16 32 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.06 1.08 8.14 -2.39 -0.02 1.07 16 35 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.41 5.10 7.97 -92.70 -0.74 4.36 16 37 H 0.10 1.94 8.14 -2.39 -0.02 1.93 16 38 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.06 1.84 7.73 -2.39 -0.02 1.82 16 40 H 0.07 1.93 7.20 -2.39 -0.02 1.92 16 41 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.06 1.80 8.14 -2.39 -0.02 1.79 16 43 H 0.09 2.11 7.25 -2.39 -0.02 2.10 16 44 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.05 2.54 7.05 -2.39 -0.02 2.52 16 46 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 47 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 48 H 0.06 2.16 7.08 -2.39 -0.02 2.15 16 49 H 0.11 2.62 7.77 -2.39 -0.02 2.60 16 Total: -1.00 -74.04 416.49 3.51 -70.52 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: 0.20 Total: 17.00 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: 6.49 Total: -8.95 kcal Atomic # 7 Polarization: -98.24 SS G_CDS: -3.97 Total: -102.21 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -0.05 Total: -17.58 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Atomic # 16 Polarization: -3.67 SS G_CDS: -1.19 Total: -4.86 kcal Total: -74.04 3.51 -70.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130012757.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.671 kcal (2) G-P(sol) polarization free energy of solvation -74.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds