Wall clock time and date at job start Tue Mar 31 2020 22:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81400 * 103.00052 * 2 1 4 4 C 1.53001 * 109.47314 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.46846 * 59.99847 * 4 3 2 6 6 C 1.53002 * 109.46973 * 179.97438 * 4 3 2 7 7 N 1.46497 * 109.46906 * 300.00209 * 4 3 2 8 8 C 1.34780 * 120.00031 * 155.00257 * 7 4 3 9 9 O 1.21273 * 119.99822 * 359.97438 * 8 7 4 10 10 C 1.50695 * 119.99639 * 179.97438 * 8 7 4 11 11 C 1.52999 * 109.46918 * 179.97438 * 10 8 7 12 12 C 1.50702 * 109.47451 * 180.02562 * 11 10 8 13 13 C 1.39866 * 126.04287 * 89.96846 * 12 11 10 14 14 C 1.50705 * 125.89802 * 0.03191 * 13 12 11 15 15 N 1.30837 * 108.20458 * 180.02562 * 13 12 11 16 16 N 1.40086 * 108.20700 * 0.02562 * 15 13 12 17 17 C 1.46491 * 126.04129 * 179.97438 * 16 15 13 18 18 C 1.50702 * 109.46957 * 90.02579 * 17 16 15 19 19 H 1.08002 * 120.00299 * 0.02562 * 18 17 16 20 20 C 1.37884 * 119.99942 * 179.72213 * 18 17 16 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 17 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 17 23 23 H 1.48496 * 109.47341 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46983 * 120.00379 * 22 20 18 25 25 H 1.48503 * 109.47491 * 240.00192 * 22 20 18 26 26 C 1.34955 * 107.92007 * 0.26426 * 16 15 13 27 27 C 1.50708 * 126.12162 * 179.73553 * 26 16 15 28 28 H 1.09000 * 109.46729 * 60.00370 * 1 2 3 29 29 H 1.08994 * 109.46586 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47083 * 300.00015 * 1 2 3 31 31 H 1.08994 * 109.47242 * 59.99703 * 3 2 1 32 32 H 1.09001 * 109.47066 * 299.99905 * 3 2 1 33 33 H 1.08990 * 109.47276 * 300.00190 * 6 4 3 34 34 H 1.09000 * 109.46674 * 60.00556 * 6 4 3 35 35 H 1.09002 * 109.46410 * 179.97438 * 6 4 3 36 36 H 0.97005 * 119.99776 * 334.98915 * 7 4 3 37 37 H 1.08997 * 109.47366 * 60.00063 * 10 8 7 38 38 H 1.09000 * 109.47755 * 299.99776 * 10 8 7 39 39 H 1.09001 * 109.47356 * 60.00206 * 11 10 8 40 40 H 1.09002 * 109.47319 * 299.99905 * 11 10 8 41 41 H 1.08999 * 109.46544 * 269.99193 * 14 13 12 42 42 H 1.09000 * 109.47294 * 29.99156 * 14 13 12 43 43 H 1.08993 * 109.46794 * 149.99571 * 14 13 12 44 44 H 1.09004 * 109.47166 * 330.02845 * 17 16 15 45 45 H 1.08994 * 109.47507 * 210.02551 * 17 16 15 46 46 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 47 47 H 1.09003 * 109.47042 * 90.02700 * 27 26 16 48 48 H 1.09007 * 109.46511 * 210.02061 * 27 26 16 49 49 H 1.08991 * 109.47237 * 330.02091 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9400 -0.0006 5 1 4.1609 1.4704 -0.8909 6 6 4.0865 3.4308 -0.0013 7 7 4.3059 1.3087 1.1952 8 6 5.5842 0.8815 1.1928 9 8 6.2678 1.0193 0.2006 10 6 6.1640 0.2326 2.4232 11 6 7.6194 -0.1569 2.1565 12 6 8.1991 -0.8064 3.3867 13 6 8.1758 -2.1728 3.6844 14 6 7.5660 -3.2533 2.8289 15 7 8.7748 -2.3509 4.8338 16 7 9.1985 -1.1015 5.3049 17 6 9.9118 -0.8500 6.5594 18 6 11.3971 -0.9305 6.3176 19 1 11.7722 -1.1469 5.3282 20 6 12.2774 -0.7217 7.3581 21 7 11.8206 -0.4578 8.5628 22 14 14.1185 -0.8139 7.0566 23 1 14.3711 -1.1224 5.6262 24 1 14.7421 0.4898 7.3990 25 1 14.7063 -1.8816 7.9050 26 6 8.8277 -0.1697 4.4018 27 6 9.0738 1.3136 4.5037 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8032 2.2371 0.8899 32 1 1.8032 2.2371 -0.8900 33 1 3.6672 3.9001 -0.8912 34 1 3.6679 3.9006 0.8888 35 1 5.1696 3.5536 -0.0013 36 1 3.7591 1.1983 1.9888 37 1 5.5886 -0.6599 2.6687 38 1 6.1220 0.9328 3.2574 39 1 8.1952 0.7354 1.9108 40 1 7.6611 -0.8574 1.3224 41 1 6.5219 -3.3926 3.1091 42 1 7.6251 -2.9630 1.7799 43 1 8.1100 -4.1858 2.9791 44 1 9.6229 -1.5979 7.2979 45 1 9.6573 0.1431 6.9294 46 1 12.4399 -0.3112 9.2949 47 1 10.0302 1.5559 4.0403 48 1 8.2754 1.8503 3.9911 49 1 9.0936 1.6074 5.5531 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131192638.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:55 Heat of formation + Delta-G solvation = 5.074184 kcal Electronic energy + Delta-G solvation = -26821.123247 eV Core-core repulsion = 23103.019460 eV Total energy + Delta-G solvation = -3718.103787 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.58985 -39.81272 -36.35679 -34.33706 -33.34464 -32.45682 -31.85251 -30.05936 -29.43136 -28.91911 -27.76327 -26.72196 -25.84294 -23.99776 -22.36669 -21.48466 -20.43142 -18.76176 -18.59844 -17.28413 -16.79183 -16.68527 -16.28668 -15.60904 -15.36419 -14.71320 -14.53929 -14.35981 -14.30785 -14.00947 -13.79511 -13.65855 -13.44390 -13.13472 -13.02160 -12.88753 -12.63983 -12.53114 -12.45484 -12.23752 -12.00717 -11.82635 -11.75473 -11.60611 -11.46457 -11.30820 -11.21401 -10.92626 -10.80344 -10.66266 -10.42731 -10.24616 -9.82954 -9.68438 -9.55898 -9.27121 -8.64051 -8.14287 -8.10303 -7.43105 -6.25386 -4.32323 1.17668 2.12528 2.68059 2.78789 3.01778 3.20777 3.28720 3.34807 3.45311 3.65318 4.14112 4.30883 4.48413 4.66078 4.68862 4.80952 4.84380 5.00196 5.07472 5.08531 5.24037 5.26372 5.31308 5.33808 5.38572 5.45948 5.61661 5.69612 5.82293 5.83716 5.89105 5.99888 6.03219 6.05933 6.11223 6.27451 6.29284 6.40217 6.51683 6.59470 6.89603 7.05461 7.15091 7.38986 7.55782 7.68120 7.90034 8.09075 8.21314 8.69994 8.78348 9.34054 10.82211 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020495 B = 0.002066 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.835988 B =13546.986792 C =14097.610631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 S -0.244 6.244 3 C -0.099 4.099 4 C 0.159 3.841 5 H 0.097 0.903 6 C -0.159 4.159 7 N -0.729 5.729 8 C 0.518 3.482 9 O -0.540 6.540 10 C -0.133 4.133 11 C -0.010 4.010 12 C -0.268 4.268 13 C 0.051 3.949 14 C -0.065 4.065 15 N -0.298 5.298 16 N -0.325 5.325 17 C 0.257 3.743 18 C -0.533 4.533 19 H 0.064 0.936 20 C 0.064 3.936 21 N -0.892 5.892 22 Si 0.906 3.094 23 H -0.271 1.271 24 H -0.281 1.281 25 H -0.281 1.281 26 C 0.092 3.908 27 C -0.085 4.085 28 H 0.075 0.925 29 H 0.101 0.899 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.402 0.598 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.065 0.935 44 H 0.051 0.949 45 H 0.051 0.949 46 H 0.267 0.733 47 H 0.076 0.924 48 H 0.070 0.930 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.031 6.941 -15.736 28.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 S -0.019 6.019 3 C -0.248 4.248 4 C 0.053 3.947 5 H 0.115 0.885 6 C -0.219 4.219 7 N -0.382 5.382 8 C 0.305 3.695 9 O -0.416 6.416 10 C -0.173 4.173 11 C -0.049 4.049 12 C -0.280 4.280 13 C -0.113 4.113 14 C -0.123 4.123 15 N -0.122 5.122 16 N -0.105 5.105 17 C 0.139 3.861 18 C -0.572 4.572 19 H 0.083 0.917 20 C -0.139 4.139 21 N -0.530 5.530 22 Si 0.733 3.267 23 H -0.195 1.195 24 H -0.207 1.207 25 H -0.206 1.206 26 C -0.039 4.039 27 C -0.144 4.144 28 H 0.094 0.906 29 H 0.120 0.880 30 H 0.095 0.905 31 H 0.105 0.895 32 H 0.113 0.887 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.236 0.764 37 H 0.111 0.889 38 H 0.108 0.892 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.077 0.923 47 H 0.095 0.905 48 H 0.089 0.911 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -21.361 5.352 -15.217 26.767 hybrid contribution -0.426 1.549 -0.041 1.607 sum -21.787 6.901 -15.257 27.478 Atomic orbital electron populations 1.23418 0.94743 1.06668 1.04795 1.87338 1.06506 1.10018 1.97988 1.23837 0.99466 0.95671 1.05837 1.20581 0.89436 0.94154 0.90567 0.88543 1.22174 1.03238 0.94350 1.02163 1.46137 1.13483 1.62384 1.16208 1.21021 0.80983 0.77204 0.90252 1.90686 1.59521 1.56061 1.35339 1.21741 0.98817 1.01556 0.95195 1.19385 0.91531 0.99866 0.94124 1.19357 1.15424 0.92878 1.00313 1.21947 1.00340 0.94283 0.94758 1.20027 0.99508 0.95458 0.97328 1.77270 1.18333 1.03763 1.12787 1.49227 1.40575 1.02564 1.18121 1.19646 0.91238 0.98140 0.77085 1.21353 0.89733 1.49771 0.96341 0.91741 1.24935 0.99759 0.94507 0.94673 1.69931 1.35383 1.47366 1.00357 0.86303 0.83957 0.77821 0.78636 1.19550 1.20668 1.20637 1.20774 0.98674 0.93145 0.91306 1.20344 1.02296 0.88588 1.03140 0.90590 0.87986 0.90501 0.89516 0.88698 0.91577 0.92237 0.91104 0.76361 0.88895 0.89158 0.91477 0.91283 0.91566 0.91218 0.91624 0.93102 0.93123 0.92344 0.90495 0.91113 0.90986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.59 10.76 101.05 1.09 0.50 16 2 S -0.24 -1.85 21.96 -107.50 -2.36 -4.21 16 3 C -0.10 -0.55 5.50 37.16 0.20 -0.35 16 4 C 0.16 1.22 2.63 -67.93 -0.18 1.05 16 5 H 0.10 0.97 7.58 -51.93 -0.39 0.58 16 6 C -0.16 -1.08 9.49 37.16 0.35 -0.73 16 7 N -0.73 -6.28 4.61 -53.81 -0.25 -6.52 16 8 C 0.52 6.11 7.79 -10.99 -0.09 6.03 16 9 O -0.54 -8.33 15.64 5.56 0.09 -8.25 16 10 C -0.13 -1.55 5.68 -27.89 -0.16 -1.71 16 11 C -0.01 -0.15 4.41 -27.88 -0.12 -0.27 16 12 C -0.27 -4.85 5.35 -105.05 -0.56 -5.41 16 13 C 0.05 0.99 7.22 -82.40 -0.59 0.39 16 14 C -0.06 -0.95 10.26 36.01 0.37 -0.58 16 15 N -0.30 -6.93 12.58 33.67 0.42 -6.51 16 16 N -0.33 -7.67 3.60 -58.31 -0.21 -7.88 16 17 C 0.26 6.64 6.00 -5.20 -0.03 6.61 16 18 C -0.53 -14.88 9.39 -34.44 -0.32 -15.21 16 19 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 20 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 21 N -0.89 -25.27 13.29 55.43 0.74 -24.54 16 22 Si 0.91 21.38 29.54 -169.99 -5.02 16.36 16 23 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 C 0.09 1.85 6.93 -82.26 -0.57 1.28 16 27 C -0.09 -1.41 9.72 36.01 0.35 -1.06 16 28 H 0.08 0.28 8.14 -51.92 -0.42 -0.14 16 29 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 0.41 8.14 -51.92 -0.42 -0.01 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.40 2.69 8.60 -40.82 -0.35 2.34 16 37 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.07 1.02 7.75 -51.93 -0.40 0.61 16 40 H 0.07 1.03 7.21 -51.93 -0.37 0.66 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.07 0.91 7.25 -51.93 -0.38 0.53 16 43 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 45 H 0.05 1.29 7.04 -51.93 -0.37 0.93 16 46 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 47 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 48 H 0.07 0.94 7.79 -51.93 -0.40 0.54 16 49 H 0.07 1.22 7.07 -51.93 -0.37 0.85 16 LS Contribution 419.54 15.07 6.32 6.32 Total: -1.00 -33.20 419.54 -9.13 -42.33 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -8.50 Total: 0.68 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: -0.36 Total: -7.79 kcal Atomic # 7 Polarization: -46.15 SS G_CDS: 0.70 Total: -45.45 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: 0.09 Total: -8.25 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.85 SS G_CDS: -2.36 Total: -4.21 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -33.20 -9.13 -42.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131192638.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.404 kcal (2) G-P(sol) polarization free energy of solvation -33.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds