Wall clock time and date at job start Tue Mar 31 2020 22:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81400 * 103.00052 * 2 1 4 4 C 1.53001 * 109.47314 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.46846 * 59.99847 * 4 3 2 6 6 C 1.53002 * 109.46973 * 179.97438 * 4 3 2 7 7 N 1.46497 * 109.46906 * 300.00209 * 4 3 2 8 8 C 1.34780 * 120.00031 * 155.00257 * 7 4 3 9 9 O 1.21273 * 119.99822 * 359.97438 * 8 7 4 10 10 C 1.50695 * 119.99639 * 179.97438 * 8 7 4 11 11 C 1.52999 * 109.46918 * 179.97438 * 10 8 7 12 12 C 1.50702 * 109.47451 * 180.02562 * 11 10 8 13 13 C 1.39866 * 126.04287 * 89.96846 * 12 11 10 14 14 C 1.50705 * 125.89802 * 0.03191 * 13 12 11 15 15 N 1.30837 * 108.20458 * 180.02562 * 13 12 11 16 16 N 1.40086 * 108.20700 * 0.02562 * 15 13 12 17 17 C 1.46491 * 126.04129 * 179.97438 * 16 15 13 18 18 C 1.50702 * 109.46957 * 90.02579 * 17 16 15 19 19 H 1.08002 * 120.00299 * 0.02562 * 18 17 16 20 20 C 1.37884 * 119.99942 * 179.72213 * 18 17 16 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 17 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 17 23 23 H 1.48496 * 109.47341 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46983 * 120.00379 * 22 20 18 25 25 H 1.48503 * 109.47491 * 240.00192 * 22 20 18 26 26 C 1.34955 * 107.92007 * 0.26426 * 16 15 13 27 27 C 1.50708 * 126.12162 * 179.73553 * 26 16 15 28 28 H 1.09000 * 109.46729 * 60.00370 * 1 2 3 29 29 H 1.08994 * 109.46586 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47083 * 300.00015 * 1 2 3 31 31 H 1.08994 * 109.47242 * 59.99703 * 3 2 1 32 32 H 1.09001 * 109.47066 * 299.99905 * 3 2 1 33 33 H 1.08990 * 109.47276 * 300.00190 * 6 4 3 34 34 H 1.09000 * 109.46674 * 60.00556 * 6 4 3 35 35 H 1.09002 * 109.46410 * 179.97438 * 6 4 3 36 36 H 0.97005 * 119.99776 * 334.98915 * 7 4 3 37 37 H 1.08997 * 109.47366 * 60.00063 * 10 8 7 38 38 H 1.09000 * 109.47755 * 299.99776 * 10 8 7 39 39 H 1.09001 * 109.47356 * 60.00206 * 11 10 8 40 40 H 1.09002 * 109.47319 * 299.99905 * 11 10 8 41 41 H 1.08999 * 109.46544 * 269.99193 * 14 13 12 42 42 H 1.09000 * 109.47294 * 29.99156 * 14 13 12 43 43 H 1.08993 * 109.46794 * 149.99571 * 14 13 12 44 44 H 1.09004 * 109.47166 * 330.02845 * 17 16 15 45 45 H 1.08994 * 109.47507 * 210.02551 * 17 16 15 46 46 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 47 47 H 1.09003 * 109.47042 * 90.02700 * 27 26 16 48 48 H 1.09007 * 109.46511 * 210.02061 * 27 26 16 49 49 H 1.08991 * 109.47237 * 330.02091 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9400 -0.0006 5 1 4.1609 1.4704 -0.8909 6 6 4.0865 3.4308 -0.0013 7 7 4.3059 1.3087 1.1952 8 6 5.5842 0.8815 1.1928 9 8 6.2678 1.0193 0.2006 10 6 6.1640 0.2326 2.4232 11 6 7.6194 -0.1569 2.1565 12 6 8.1991 -0.8064 3.3867 13 6 8.1758 -2.1728 3.6844 14 6 7.5660 -3.2533 2.8289 15 7 8.7748 -2.3509 4.8338 16 7 9.1985 -1.1015 5.3049 17 6 9.9118 -0.8500 6.5594 18 6 11.3971 -0.9305 6.3176 19 1 11.7722 -1.1469 5.3282 20 6 12.2774 -0.7217 7.3581 21 7 11.8206 -0.4578 8.5628 22 14 14.1185 -0.8139 7.0566 23 1 14.3711 -1.1224 5.6262 24 1 14.7421 0.4898 7.3990 25 1 14.7063 -1.8816 7.9050 26 6 8.8277 -0.1697 4.4018 27 6 9.0738 1.3136 4.5037 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8032 2.2371 0.8899 32 1 1.8032 2.2371 -0.8900 33 1 3.6672 3.9001 -0.8912 34 1 3.6679 3.9006 0.8888 35 1 5.1696 3.5536 -0.0013 36 1 3.7591 1.1983 1.9888 37 1 5.5886 -0.6599 2.6687 38 1 6.1220 0.9328 3.2574 39 1 8.1952 0.7354 1.9108 40 1 7.6611 -0.8574 1.3224 41 1 6.5219 -3.3926 3.1091 42 1 7.6251 -2.9630 1.7799 43 1 8.1100 -4.1858 2.9791 44 1 9.6229 -1.5979 7.2979 45 1 9.6573 0.1431 6.9294 46 1 12.4399 -0.3112 9.2949 47 1 10.0302 1.5559 4.0403 48 1 8.2754 1.8503 3.9911 49 1 9.0936 1.6074 5.5531 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131192638.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:54 Heat of formation + Delta-G solvation = -14.884762 kcal Electronic energy + Delta-G solvation = -26821.988732 eV Core-core repulsion = 23103.019460 eV Total energy + Delta-G solvation = -3718.969272 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.14190 -40.73825 -37.12406 -36.06252 -34.82231 -34.18657 -32.72146 -31.43991 -30.45769 -29.80096 -28.24460 -28.06709 -27.60889 -25.42420 -23.98896 -22.27653 -21.31099 -20.29778 -20.12413 -18.82458 -18.14122 -17.50236 -17.26018 -16.92192 -16.44937 -16.23384 -15.95021 -15.31210 -15.02733 -14.88982 -14.69155 -14.59645 -14.43077 -14.32270 -14.05260 -14.00272 -13.83196 -13.63244 -13.47991 -13.35386 -13.26292 -13.19663 -13.03210 -12.84845 -12.72267 -12.62484 -12.58413 -12.39174 -12.23888 -12.03619 -11.83179 -11.69104 -11.14295 -10.91626 -10.76062 -10.75442 -10.04288 -9.82777 -9.01103 -8.65415 -8.35272 -6.52769 0.72848 1.18586 1.34140 1.36213 1.48828 1.69941 1.77386 1.90191 1.95340 2.32692 2.34371 2.93987 3.60375 3.82781 3.93491 4.00154 4.04174 4.23143 4.29485 4.29761 4.37514 4.38178 4.39471 4.48507 4.58827 4.63737 4.65954 4.73009 4.73711 4.80779 4.85660 4.88232 4.91588 4.93468 4.98924 5.04436 5.05135 5.14583 5.28760 5.33563 5.46364 5.50658 5.56621 5.59126 5.80282 6.06402 6.32864 6.62749 6.63456 7.12585 7.18538 7.36832 8.70859 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020495 B = 0.002066 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.835988 B =13546.986792 C =14097.610631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.312 6.312 3 C -0.080 4.080 4 C 0.158 3.842 5 H 0.070 0.930 6 C -0.153 4.153 7 N -0.714 5.714 8 C 0.520 3.480 9 O -0.581 6.581 10 C -0.125 4.125 11 C -0.003 4.003 12 C -0.257 4.257 13 C 0.054 3.946 14 C -0.063 4.063 15 N -0.350 5.350 16 N -0.355 5.355 17 C 0.275 3.725 18 C -0.552 4.552 19 H 0.046 0.954 20 C 0.021 3.979 21 N -0.918 5.918 22 Si 0.971 3.029 23 H -0.275 1.275 24 H -0.265 1.265 25 H -0.274 1.274 26 C 0.078 3.922 27 C -0.082 4.082 28 H 0.086 0.914 29 H 0.103 0.897 30 H 0.088 0.912 31 H 0.106 0.894 32 H 0.111 0.889 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.044 0.956 36 H 0.413 0.587 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.064 0.936 44 H 0.019 0.981 45 H 0.048 0.952 46 H 0.274 0.726 47 H 0.075 0.925 48 H 0.107 0.893 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.755 8.161 -16.946 31.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.086 6.086 3 C -0.229 4.229 4 C 0.052 3.948 5 H 0.088 0.912 6 C -0.213 4.213 7 N -0.367 5.367 8 C 0.308 3.692 9 O -0.461 6.461 10 C -0.165 4.165 11 C -0.042 4.042 12 C -0.269 4.269 13 C -0.111 4.111 14 C -0.121 4.121 15 N -0.174 5.174 16 N -0.135 5.135 17 C 0.156 3.844 18 C -0.590 4.590 19 H 0.064 0.936 20 C -0.180 4.180 21 N -0.556 5.556 22 Si 0.795 3.205 23 H -0.200 1.200 24 H -0.190 1.190 25 H -0.199 1.199 26 C -0.052 4.052 27 C -0.140 4.140 28 H 0.105 0.895 29 H 0.122 0.878 30 H 0.107 0.893 31 H 0.125 0.875 32 H 0.129 0.871 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.064 0.936 36 H 0.250 0.750 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.083 0.917 44 H 0.037 0.963 45 H 0.066 0.934 46 H 0.083 0.917 47 H 0.094 0.906 48 H 0.125 0.875 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -23.141 6.589 -16.422 29.130 hybrid contribution -0.022 1.149 0.255 1.177 sum -23.163 7.737 -16.166 29.287 Atomic orbital electron populations 1.23421 0.91535 1.07189 1.05929 1.87566 1.10189 1.12685 1.98185 1.23754 0.97566 0.93915 1.07615 1.20620 0.90825 0.94378 0.88994 0.91199 1.22115 1.01705 0.93707 1.03808 1.46015 1.12508 1.61132 1.17009 1.20949 0.81674 0.76998 0.89540 1.90679 1.60750 1.57972 1.36679 1.21614 0.96788 1.02461 0.95611 1.19344 0.93340 0.99348 0.92162 1.19718 1.14129 0.92433 1.00585 1.22764 0.98497 0.96091 0.93738 1.20199 1.00459 0.93928 0.97514 1.77205 1.20720 1.04431 1.15046 1.48996 1.42459 1.03639 1.18435 1.19130 0.90621 0.96723 0.77962 1.21456 0.91155 1.50623 0.95759 0.93575 1.25749 1.04203 0.93728 0.94292 1.70008 1.37107 1.47435 1.01061 0.85307 0.78455 0.78539 0.78167 1.19985 1.19021 1.19899 1.21464 0.98366 0.94309 0.91039 1.20440 1.03607 0.86829 1.03138 0.89480 0.87819 0.89293 0.87516 0.87051 0.89849 0.90708 0.93637 0.74980 0.87732 0.87765 0.91815 0.91384 0.89132 0.89192 0.91683 0.96290 0.93433 0.91726 0.90616 0.87495 0.91795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.77 10.76 113.37 1.22 0.45 16 2 S -0.31 -4.21 21.96 -56.49 -1.24 -5.45 16 3 C -0.08 -0.68 5.50 71.98 0.40 -0.28 16 4 C 0.16 2.16 2.63 44.99 0.12 2.28 16 5 H 0.07 1.38 7.58 -2.39 -0.02 1.36 16 6 C -0.15 -1.78 9.49 71.98 0.68 -1.09 16 7 N -0.71 -10.95 4.61 -442.54 -2.04 -12.99 16 8 C 0.52 11.53 7.79 87.65 0.68 12.21 16 9 O -0.58 -17.63 15.64 -3.01 -0.05 -17.67 16 10 C -0.12 -2.64 5.68 29.85 0.17 -2.47 16 11 C 0.00 -0.08 4.41 29.85 0.13 0.05 16 12 C -0.26 -9.13 5.35 -20.14 -0.11 -9.24 16 13 C 0.05 2.06 7.22 43.10 0.31 2.38 16 14 C -0.06 -1.74 10.26 71.24 0.73 -1.01 16 15 N -0.35 -16.77 12.58 -47.38 -0.60 -17.37 16 16 N -0.36 -17.32 3.60 -338.41 -1.22 -18.54 16 17 C 0.27 14.91 6.00 85.64 0.51 15.42 16 18 C -0.55 -31.84 9.39 25.60 0.24 -31.60 16 19 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 20 C 0.02 1.18 5.46 84.66 0.46 1.65 16 21 N -0.92 -52.74 13.29 21.45 0.28 -52.46 16 22 Si 0.97 44.13 29.54 68.60 2.03 46.16 16 23 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 24 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 25 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 26 C 0.08 3.14 6.93 41.41 0.29 3.43 16 27 C -0.08 -2.68 9.72 71.24 0.69 -1.99 16 28 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.41 4.47 8.60 -92.70 -0.80 3.68 16 37 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.06 1.84 7.75 -2.39 -0.02 1.83 16 40 H 0.07 1.94 7.21 -2.39 -0.02 1.92 16 41 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.09 2.14 7.25 -2.39 -0.02 2.12 16 43 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.02 1.12 8.14 -2.38 -0.02 1.10 16 45 H 0.05 2.55 7.04 -2.39 -0.02 2.53 16 46 H 0.27 14.59 8.31 -92.70 -0.77 13.82 16 47 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 48 H 0.11 2.64 7.79 -2.38 -0.02 2.62 16 49 H 0.06 2.18 7.07 -2.39 -0.02 2.16 16 Total: -1.00 -75.12 419.54 3.83 -71.29 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: 0.13 Total: 16.85 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: 6.53 Total: -9.82 kcal Atomic # 7 Polarization: -97.79 SS G_CDS: -3.57 Total: -101.36 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -0.05 Total: -17.67 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Atomic # 16 Polarization: -4.21 SS G_CDS: -1.24 Total: -5.45 kcal Total: -75.12 3.83 -71.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131192638.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.405 kcal (2) G-P(sol) polarization free energy of solvation -75.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds