Wall clock time and date at job start Tue Mar 31 2020 23:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47288 * 2 1 4 4 C 1.53005 * 109.46829 * 185.00270 * 3 2 1 5 5 N 1.46902 * 109.46834 * 304.99749 * 3 2 1 6 6 C 1.46891 * 111.00205 * 300.00126 * 5 3 2 7 7 C 1.53005 * 109.47141 * 179.97438 * 6 5 3 8 8 C 1.50705 * 109.47301 * 180.02562 * 7 6 5 9 9 O 1.21280 * 119.99661 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99873 * 180.02562 * 8 7 6 11 11 C 1.46492 * 119.99840 * 359.97438 * 10 8 7 12 12 C 1.46500 * 119.99456 * 180.02562 * 10 8 7 13 13 C 1.50697 * 109.47127 * 89.99775 * 12 10 8 14 14 H 1.07998 * 120.00086 * 359.97438 * 13 12 10 15 15 C 1.37874 * 119.99964 * 179.97438 * 13 12 10 16 16 N 1.31516 * 120.00358 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00061 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.46965 * 90.00429 * 17 15 13 19 19 H 1.48503 * 109.47242 * 209.99843 * 17 15 13 20 20 H 1.48500 * 109.47385 * 330.00426 * 17 15 13 21 21 C 1.50695 * 109.46934 * 65.00002 * 3 2 1 22 22 N 1.29034 * 124.91330 * 185.00078 * 21 3 2 23 23 C 1.31776 * 117.12603 * 179.73408 * 22 21 3 24 24 C 1.50694 * 122.75407 * 180.02562 * 23 22 21 25 25 C 1.33639 * 114.49979 * 359.97438 * 23 22 21 26 26 S 1.70972 * 124.92008 * 4.69382 * 21 3 2 27 27 H 1.09005 * 109.46784 * 300.00100 * 1 2 3 28 28 H 1.09000 * 109.47173 * 59.99894 * 1 2 3 29 29 H 1.08999 * 109.47386 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47265 * 239.99679 * 2 1 3 31 31 H 1.09000 * 109.47173 * 120.00106 * 2 1 3 32 32 H 1.09001 * 109.46693 * 299.99531 * 4 3 2 33 33 H 1.08991 * 109.47348 * 60.00109 * 4 3 2 34 34 H 1.09006 * 109.46623 * 180.02562 * 4 3 2 35 35 H 1.00896 * 110.99821 * 176.04181 * 5 3 2 36 36 H 1.08996 * 109.47649 * 299.99987 * 6 5 3 37 37 H 1.09000 * 109.47231 * 60.00095 * 6 5 3 38 38 H 1.08991 * 109.47403 * 300.00374 * 7 6 5 39 39 H 1.09000 * 109.46826 * 60.00037 * 7 6 5 40 40 H 1.09010 * 109.47006 * 90.00883 * 11 10 8 41 41 H 1.08999 * 109.46972 * 209.99879 * 11 10 8 42 42 H 1.08997 * 109.47776 * 330.00749 * 11 10 8 43 43 H 1.09001 * 109.46447 * 209.99754 * 12 10 8 44 44 H 1.08997 * 109.47164 * 329.99712 * 12 10 8 45 45 H 0.96994 * 120.00402 * 179.97438 * 16 15 13 46 46 H 1.09006 * 109.46916 * 89.99481 * 24 23 22 47 47 H 1.08999 * 109.47932 * 209.99959 * 24 23 22 48 48 H 1.09005 * 109.46943 * 330.00126 * 24 23 22 49 49 H 1.08002 * 126.03942 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5649 1.4442 -0.1258 5 7 1.4543 2.1689 -1.1346 6 6 1.8225 1.5391 -2.4095 7 6 1.1949 2.3216 -3.5649 8 6 1.5721 1.6751 -4.8729 9 8 2.2742 0.6862 -4.8803 10 7 1.1301 2.1965 -6.0345 11 6 0.2826 3.3913 -6.0255 12 6 1.4964 1.5677 -7.3060 13 6 0.4643 0.5316 -7.6697 14 1 -0.3798 0.3585 -7.0186 15 6 0.5977 -0.1954 -8.8335 16 7 1.6253 0.0157 -9.6267 17 14 -0.6813 -1.4803 -9.2840 18 1 -1.7533 -0.8486 -10.0947 19 1 -0.0389 -2.5635 -10.0709 20 1 -1.2685 -2.0500 -8.0447 21 6 1.6414 2.1162 1.2877 22 7 1.8384 3.3617 1.5613 23 6 1.4220 3.7922 2.7351 24 6 1.5865 5.2210 3.1848 25 6 0.8408 2.8580 3.4937 26 16 0.8558 1.3428 2.5945 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.9994 0.9052 0.7161 33 1 3.8532 0.9570 -1.0571 34 1 3.9283 2.4719 -0.1253 35 1 1.7246 3.1409 -1.1200 36 1 2.9073 1.5410 -2.5159 37 1 1.4576 0.5121 -2.4262 38 1 0.1102 2.3193 -3.4584 39 1 1.5594 3.3487 -3.5484 40 1 0.9093 4.2818 -6.0752 41 1 -0.3859 3.3691 -6.8862 42 1 -0.3063 3.4123 -5.1085 43 1 1.5404 2.3266 -8.0872 44 1 2.4714 1.0904 -7.2077 45 1 1.7194 -0.4960 -10.4453 46 1 0.7132 5.7996 2.8833 47 1 1.6857 5.2515 4.2698 48 1 2.4796 5.6457 2.7263 49 1 0.4345 3.0054 4.4834 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131912021.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:11 Heat of formation + Delta-G solvation = 3.866858 kcal Electronic energy + Delta-G solvation = -27458.908970 eV Core-core repulsion = 23740.752829 eV Total energy + Delta-G solvation = -3718.156141 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.37113 -39.12106 -38.18050 -34.81608 -33.51853 -32.55798 -31.94828 -30.62052 -28.88292 -27.87514 -27.48506 -25.86340 -25.43801 -23.60016 -23.42225 -21.80698 -20.07997 -19.56897 -18.44983 -17.76898 -16.59721 -16.45180 -16.28269 -15.52058 -15.31648 -15.11838 -14.74547 -14.54705 -14.22776 -14.06537 -13.99947 -13.60401 -13.34783 -13.16914 -12.82177 -12.70150 -12.65940 -12.36345 -12.19818 -12.15696 -11.91467 -11.79215 -11.72528 -11.52626 -11.37557 -11.14619 -11.12256 -10.91609 -10.83887 -10.76468 -10.53708 -10.14194 -9.84023 -9.60722 -9.54311 -8.88624 -8.84163 -8.46060 -8.42219 -7.61148 -6.02796 -4.07442 0.49263 1.15415 1.57373 2.56304 3.30997 3.37368 3.40983 3.49076 3.69706 3.83013 4.29570 4.41627 4.47641 4.72094 4.76974 4.88327 4.99606 5.13415 5.15153 5.24460 5.28791 5.30852 5.33429 5.38265 5.41537 5.44254 5.51724 5.61139 5.64242 5.67424 5.83161 5.87055 5.92517 5.95911 5.99945 6.06828 6.14906 6.16177 6.26084 6.37150 6.87668 7.07987 7.29816 7.46360 7.55585 7.56875 7.93793 8.25413 8.45339 8.92199 9.12703 9.57635 11.05269 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020176 B = 0.002269 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.487197 B =12335.912061 C =12886.386611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C 0.194 3.806 4 C -0.177 4.177 5 N -0.670 5.670 6 C 0.070 3.930 7 C -0.136 4.136 8 C 0.506 3.494 9 O -0.545 6.545 10 N -0.603 5.603 11 C 0.084 3.916 12 C 0.245 3.755 13 C -0.524 4.524 14 H 0.057 0.943 15 C 0.060 3.940 16 N -0.895 5.895 17 Si 0.898 3.102 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.274 1.274 21 C 0.075 3.925 22 N -0.469 5.469 23 C 0.068 3.932 24 C -0.078 4.078 25 C -0.285 4.285 26 S 0.144 5.856 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.055 0.945 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.348 0.652 36 H 0.045 0.955 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.043 0.957 41 H 0.073 0.927 42 H 0.058 0.942 43 H 0.031 0.969 44 H 0.043 0.957 45 H 0.263 0.737 46 H 0.075 0.925 47 H 0.072 0.928 48 H 0.075 0.925 49 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.316 7.975 27.144 28.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C 0.099 3.901 4 C -0.237 4.237 5 N -0.303 5.303 6 C -0.059 4.059 7 C -0.177 4.177 8 C 0.292 3.708 9 O -0.424 6.424 10 N -0.335 5.335 11 C -0.061 4.061 12 C 0.125 3.875 13 C -0.563 4.563 14 H 0.075 0.925 15 C -0.142 4.142 16 N -0.535 5.535 17 Si 0.726 3.274 18 H -0.207 1.207 19 H -0.211 1.211 20 H -0.199 1.199 21 C -0.203 4.203 22 N -0.183 5.183 23 C -0.064 4.064 24 C -0.138 4.138 25 C -0.424 4.424 26 S 0.400 5.600 27 H 0.073 0.927 28 H 0.095 0.905 29 H 0.074 0.926 30 H 0.104 0.896 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.168 0.832 36 H 0.063 0.937 37 H 0.104 0.896 38 H 0.113 0.887 39 H 0.101 0.899 40 H 0.062 0.938 41 H 0.091 0.909 42 H 0.077 0.923 43 H 0.049 0.951 44 H 0.061 0.939 45 H 0.073 0.927 46 H 0.093 0.907 47 H 0.090 0.910 48 H 0.093 0.907 49 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -1.571 6.384 26.806 27.600 hybrid contribution 0.191 0.604 -0.122 0.646 sum -1.380 6.988 26.684 27.618 Atomic orbital electron populations 1.21919 0.94373 1.01639 1.03203 1.21795 0.97794 0.93409 1.03268 1.19386 0.92811 0.92903 0.84967 1.22531 0.94732 1.03237 1.03209 1.60605 1.62231 1.06530 1.00901 1.21800 0.98701 0.99209 0.86178 1.21595 1.03032 1.00204 0.92858 1.20259 0.80888 0.84540 0.85148 1.90660 1.38553 1.25915 1.87241 1.48154 1.49264 1.27994 1.08126 1.21637 0.94572 0.87333 1.02526 1.19278 0.97262 0.92806 0.78122 1.21432 1.08744 1.20189 1.05967 0.92485 1.24945 0.95850 0.97173 0.96233 1.69931 1.29032 1.41522 1.12974 0.86499 0.81281 0.81229 0.78424 1.20657 1.21099 1.19876 1.26906 1.00467 0.92625 1.00346 1.65990 1.20999 1.13041 1.18314 1.20258 0.98545 0.98253 0.89326 1.20348 1.03242 0.89262 1.00923 1.26972 1.12004 0.96840 1.06567 1.84049 1.54288 1.12926 1.08704 0.92681 0.90506 0.92621 0.89572 0.91428 0.92017 0.90484 0.91553 0.83244 0.93688 0.89551 0.88727 0.89897 0.93843 0.90869 0.92283 0.95099 0.93880 0.92742 0.90663 0.90954 0.90651 0.81011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.33 37.16 0.35 -1.23 16 2 C -0.12 -1.26 4.01 -26.73 -0.11 -1.37 16 3 C 0.19 2.07 0.63 -132.75 -0.08 1.99 16 4 C -0.18 -1.84 8.21 37.16 0.31 -1.53 16 5 N -0.67 -7.75 5.12 -101.14 -0.52 -8.26 16 6 C 0.07 0.95 4.05 -3.83 -0.02 0.93 16 7 C -0.14 -1.97 4.51 -27.88 -0.13 -2.10 16 8 C 0.51 10.37 7.67 -10.98 -0.08 10.29 16 9 O -0.55 -13.50 15.56 5.56 0.09 -13.41 16 10 N -0.60 -12.86 2.86 -182.96 -0.52 -13.38 16 11 C 0.08 1.33 10.24 59.84 0.61 1.94 16 12 C 0.24 6.47 5.16 -5.20 -0.03 6.44 16 13 C -0.52 -15.00 9.39 -34.44 -0.32 -15.32 16 14 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 15 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 16 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 17 Si 0.90 22.00 29.54 -169.99 -5.02 16.97 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 21 C 0.08 0.82 5.71 -13.46 -0.08 0.74 16 22 N -0.47 -5.41 10.41 -8.06 -0.08 -5.50 16 23 C 0.07 0.67 6.74 -84.23 -0.57 0.11 16 24 C -0.08 -0.55 10.31 36.00 0.37 -0.18 16 25 C -0.28 -2.46 11.13 29.12 0.32 -2.13 16 26 S 0.14 1.29 19.02 -107.50 -2.04 -0.75 16 27 H 0.05 0.54 5.08 -41.11 -0.21 0.33 16 28 H 0.08 0.91 7.28 -51.93 -0.38 0.53 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.09 0.94 6.68 -51.93 -0.35 0.59 16 31 H 0.07 0.59 7.57 -51.93 -0.39 0.20 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.84 6.40 -51.93 -0.33 0.51 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.35 4.02 8.61 -39.29 -0.34 3.68 16 36 H 0.04 0.65 6.26 -51.93 -0.33 0.32 16 37 H 0.09 1.29 6.29 -51.93 -0.33 0.96 16 38 H 0.09 1.28 7.40 -51.93 -0.38 0.90 16 39 H 0.08 1.03 8.11 -51.93 -0.42 0.61 16 40 H 0.04 0.60 8.14 -51.92 -0.42 0.18 16 41 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 42 H 0.06 0.77 6.44 -51.93 -0.33 0.44 16 43 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 44 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 45 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 46 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 48 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.17 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 400.51 15.07 6.04 6.04 Total: -1.00 -33.48 400.51 -8.82 -42.30 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -7.94 Total: 1.86 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: 0.45 Total: 0.21 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: -0.39 Total: -53.22 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: 0.09 Total: -13.41 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 16 Polarization: 1.29 SS G_CDS: -2.04 Total: -0.75 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.48 -8.82 -42.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131912021.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.166 kcal (2) G-P(sol) polarization free energy of solvation -33.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds