Wall clock time and date at job start Tue Mar 31 2020 23:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47288 * 2 1 4 4 C 1.53005 * 109.46829 * 185.00270 * 3 2 1 5 5 N 1.46902 * 109.46834 * 304.99749 * 3 2 1 6 6 C 1.46891 * 111.00205 * 300.00126 * 5 3 2 7 7 C 1.53005 * 109.47141 * 179.97438 * 6 5 3 8 8 C 1.50705 * 109.47301 * 180.02562 * 7 6 5 9 9 O 1.21280 * 119.99661 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99873 * 180.02562 * 8 7 6 11 11 C 1.46492 * 119.99840 * 359.97438 * 10 8 7 12 12 C 1.46500 * 119.99456 * 180.02562 * 10 8 7 13 13 C 1.50697 * 109.47127 * 89.99775 * 12 10 8 14 14 H 1.07998 * 120.00086 * 359.97438 * 13 12 10 15 15 C 1.37874 * 119.99964 * 179.97438 * 13 12 10 16 16 N 1.31516 * 120.00358 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00061 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.46965 * 90.00429 * 17 15 13 19 19 H 1.48503 * 109.47242 * 209.99843 * 17 15 13 20 20 H 1.48500 * 109.47385 * 330.00426 * 17 15 13 21 21 C 1.50695 * 109.46934 * 65.00002 * 3 2 1 22 22 N 1.29034 * 124.91330 * 185.00078 * 21 3 2 23 23 C 1.31776 * 117.12603 * 179.73408 * 22 21 3 24 24 C 1.50694 * 122.75407 * 180.02562 * 23 22 21 25 25 C 1.33639 * 114.49979 * 359.97438 * 23 22 21 26 26 S 1.70972 * 124.92008 * 4.69382 * 21 3 2 27 27 H 1.09005 * 109.46784 * 300.00100 * 1 2 3 28 28 H 1.09000 * 109.47173 * 59.99894 * 1 2 3 29 29 H 1.08999 * 109.47386 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47265 * 239.99679 * 2 1 3 31 31 H 1.09000 * 109.47173 * 120.00106 * 2 1 3 32 32 H 1.09001 * 109.46693 * 299.99531 * 4 3 2 33 33 H 1.08991 * 109.47348 * 60.00109 * 4 3 2 34 34 H 1.09006 * 109.46623 * 180.02562 * 4 3 2 35 35 H 1.00896 * 110.99821 * 176.04181 * 5 3 2 36 36 H 1.08996 * 109.47649 * 299.99987 * 6 5 3 37 37 H 1.09000 * 109.47231 * 60.00095 * 6 5 3 38 38 H 1.08991 * 109.47403 * 300.00374 * 7 6 5 39 39 H 1.09000 * 109.46826 * 60.00037 * 7 6 5 40 40 H 1.09010 * 109.47006 * 90.00883 * 11 10 8 41 41 H 1.08999 * 109.46972 * 209.99879 * 11 10 8 42 42 H 1.08997 * 109.47776 * 330.00749 * 11 10 8 43 43 H 1.09001 * 109.46447 * 209.99754 * 12 10 8 44 44 H 1.08997 * 109.47164 * 329.99712 * 12 10 8 45 45 H 0.96994 * 120.00402 * 179.97438 * 16 15 13 46 46 H 1.09006 * 109.46916 * 89.99481 * 24 23 22 47 47 H 1.08999 * 109.47932 * 209.99959 * 24 23 22 48 48 H 1.09005 * 109.46943 * 330.00126 * 24 23 22 49 49 H 1.08002 * 126.03942 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5649 1.4442 -0.1258 5 7 1.4543 2.1689 -1.1346 6 6 1.8225 1.5391 -2.4095 7 6 1.1949 2.3216 -3.5649 8 6 1.5721 1.6751 -4.8729 9 8 2.2742 0.6862 -4.8803 10 7 1.1301 2.1965 -6.0345 11 6 0.2826 3.3913 -6.0255 12 6 1.4964 1.5677 -7.3060 13 6 0.4643 0.5316 -7.6697 14 1 -0.3798 0.3585 -7.0186 15 6 0.5977 -0.1954 -8.8335 16 7 1.6253 0.0157 -9.6267 17 14 -0.6813 -1.4803 -9.2840 18 1 -1.7533 -0.8486 -10.0947 19 1 -0.0389 -2.5635 -10.0709 20 1 -1.2685 -2.0500 -8.0447 21 6 1.6414 2.1162 1.2877 22 7 1.8384 3.3617 1.5613 23 6 1.4220 3.7922 2.7351 24 6 1.5865 5.2210 3.1848 25 6 0.8408 2.8580 3.4937 26 16 0.8558 1.3428 2.5945 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.9994 0.9052 0.7161 33 1 3.8532 0.9570 -1.0571 34 1 3.9283 2.4719 -0.1253 35 1 1.7246 3.1409 -1.1200 36 1 2.9073 1.5410 -2.5159 37 1 1.4576 0.5121 -2.4262 38 1 0.1102 2.3193 -3.4584 39 1 1.5594 3.3487 -3.5484 40 1 0.9093 4.2818 -6.0752 41 1 -0.3859 3.3691 -6.8862 42 1 -0.3063 3.4123 -5.1085 43 1 1.5404 2.3266 -8.0872 44 1 2.4714 1.0904 -7.2077 45 1 1.7194 -0.4960 -10.4453 46 1 0.7132 5.7996 2.8833 47 1 1.6857 5.2515 4.2698 48 1 2.4796 5.6457 2.7263 49 1 0.4345 3.0054 4.4834 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131912021.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:10 Heat of formation + Delta-G solvation = -18.563892 kcal Electronic energy + Delta-G solvation = -27459.881640 eV Core-core repulsion = 23740.752829 eV Total energy + Delta-G solvation = -3719.128811 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.16764 -40.62454 -39.15415 -36.59192 -34.84234 -34.42307 -32.64472 -31.63518 -30.22903 -29.06631 -28.47597 -27.28295 -26.47257 -25.14008 -24.36935 -23.23054 -20.85500 -20.39043 -19.94170 -18.69795 -18.60500 -17.79701 -17.40743 -17.03018 -16.71392 -16.07226 -16.00070 -15.85598 -15.40742 -15.13043 -14.79423 -14.58910 -14.40801 -14.10019 -14.07458 -13.95057 -13.60564 -13.45897 -13.42103 -13.25633 -13.19978 -13.17933 -12.86448 -12.82330 -12.72268 -12.51856 -12.39198 -12.20239 -12.12183 -11.98103 -11.81437 -11.69722 -11.67953 -10.64189 -10.62988 -10.54823 -10.25602 -9.59103 -9.40810 -9.36859 -8.22141 -6.37120 -0.22321 0.45454 0.87845 1.36527 1.39496 1.49995 1.83684 1.86878 2.31276 2.44661 2.98106 3.06999 3.19116 3.61122 3.85687 3.91605 4.01016 4.07649 4.23853 4.31822 4.34604 4.42791 4.43418 4.46562 4.61438 4.63540 4.68138 4.73399 4.80610 4.81426 4.88012 4.93209 4.94970 4.97902 5.03696 5.08677 5.11903 5.15631 5.21125 5.23749 5.42053 5.49809 5.56920 5.85093 5.89455 6.06597 6.35708 6.70283 6.81150 6.84373 7.28739 7.50401 8.84853 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020176 B = 0.002269 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.487197 B =12335.912061 C =12886.386611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.194 3.806 4 C -0.172 4.172 5 N -0.662 5.662 6 C 0.081 3.919 7 C -0.118 4.118 8 C 0.496 3.504 9 O -0.598 6.598 10 N -0.612 5.612 11 C 0.079 3.921 12 C 0.258 3.742 13 C -0.541 4.541 14 H 0.053 0.947 15 C 0.005 3.995 16 N -0.929 5.929 17 Si 0.968 3.032 18 H -0.263 1.263 19 H -0.281 1.281 20 H -0.272 1.272 21 C 0.053 3.947 22 N -0.488 5.488 23 C 0.045 3.955 24 C -0.076 4.076 25 C -0.278 4.278 26 S 0.165 5.835 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.350 0.650 36 H 0.032 0.968 37 H 0.070 0.930 38 H 0.114 0.886 39 H 0.113 0.887 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.094 0.906 43 H 0.022 0.978 44 H -0.003 1.003 45 H 0.267 0.733 46 H 0.080 0.920 47 H 0.093 0.907 48 H 0.068 0.932 49 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.244 8.732 29.366 30.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C 0.100 3.900 4 C -0.232 4.232 5 N -0.295 5.295 6 C -0.048 4.048 7 C -0.158 4.158 8 C 0.285 3.715 9 O -0.480 6.480 10 N -0.343 5.343 11 C -0.064 4.064 12 C 0.137 3.863 13 C -0.579 4.579 14 H 0.071 0.929 15 C -0.193 4.193 16 N -0.569 5.569 17 Si 0.793 3.207 18 H -0.188 1.188 19 H -0.206 1.206 20 H -0.197 1.197 21 C -0.225 4.225 22 N -0.204 5.204 23 C -0.087 4.087 24 C -0.135 4.135 25 C -0.417 4.417 26 S 0.421 5.579 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.170 0.830 36 H 0.051 0.949 37 H 0.088 0.912 38 H 0.132 0.868 39 H 0.131 0.869 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.113 0.887 43 H 0.040 0.960 44 H 0.015 0.985 45 H 0.076 0.924 46 H 0.099 0.901 47 H 0.111 0.889 48 H 0.087 0.913 49 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -3.523 7.192 29.045 30.129 hybrid contribution 0.820 0.408 -0.737 1.176 sum -2.703 7.599 28.307 29.434 Atomic orbital electron populations 1.21880 0.94288 1.01984 1.02637 1.21792 0.97834 0.93193 1.03386 1.19377 0.92735 0.93040 0.84860 1.22465 0.94869 1.02839 1.03037 1.60560 1.62144 1.06560 1.00202 1.21567 0.97758 0.98458 0.87020 1.21510 1.04138 1.01012 0.89150 1.21311 0.79645 0.83905 0.86645 1.90629 1.40835 1.28440 1.88119 1.48197 1.50081 1.29379 1.06677 1.21928 0.94542 0.85856 1.04033 1.18746 0.94794 0.92303 0.80500 1.21692 1.08983 1.21063 1.06206 0.92890 1.25886 0.98016 0.99316 0.96115 1.70052 1.30783 1.42619 1.13451 0.85403 0.78783 0.78347 0.78206 1.18802 1.20617 1.19696 1.26818 1.01781 0.92990 1.00889 1.66000 1.21452 1.13511 1.19432 1.20705 0.99123 0.99698 0.89158 1.20410 1.03146 0.87743 1.02190 1.27353 1.10852 0.96131 1.07379 1.83913 1.53348 1.12874 1.07746 0.92098 0.92126 0.91871 0.90820 0.89945 0.91087 0.91528 0.92108 0.83014 0.94947 0.91170 0.86820 0.86879 0.91202 0.91709 0.88708 0.96010 0.98461 0.92411 0.90121 0.88856 0.91312 0.78368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 9.33 71.98 0.67 -2.27 16 2 C -0.12 -2.44 4.01 30.59 0.12 -2.31 16 3 C 0.19 4.03 0.63 2.78 0.00 4.03 16 4 C -0.17 -3.55 8.21 71.98 0.59 -2.96 16 5 N -0.66 -14.72 5.12 -473.90 -2.43 -17.14 16 6 C 0.08 2.19 4.05 86.31 0.35 2.54 16 7 C -0.12 -3.25 4.51 29.85 0.13 -3.11 16 8 C 0.50 20.57 7.67 87.66 0.67 21.24 16 9 O -0.60 -30.94 15.56 -3.03 -0.05 -30.98 16 10 N -0.61 -26.26 2.86 -851.15 -2.43 -28.69 16 11 C 0.08 2.36 10.24 127.77 1.31 3.67 16 12 C 0.26 14.19 5.16 85.63 0.44 14.64 16 13 C -0.54 -31.62 9.39 25.60 0.24 -31.38 16 14 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 15 C 0.01 0.32 5.46 84.65 0.46 0.78 16 16 N -0.93 -56.90 13.29 21.45 0.28 -56.61 16 17 Si 0.97 45.35 29.54 68.60 2.03 47.37 16 18 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 19 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 20 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 21 C 0.05 1.09 5.71 88.52 0.51 1.59 16 22 N -0.49 -10.62 10.41 -179.42 -1.87 -12.49 16 23 C 0.04 0.79 6.74 41.52 0.28 1.07 16 24 C -0.08 -0.90 10.31 71.23 0.73 -0.17 16 25 C -0.28 -4.06 11.13 66.78 0.74 -3.32 16 26 S 0.16 2.63 19.02 -56.49 -1.07 1.55 16 27 H 0.06 1.10 5.08 -9.26 -0.05 1.06 16 28 H 0.06 1.38 7.28 -2.39 -0.02 1.37 16 29 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.07 1.64 6.68 -2.38 -0.02 1.62 16 31 H 0.08 1.35 7.57 -2.39 -0.02 1.34 16 32 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.07 1.50 6.40 -2.39 -0.02 1.49 16 34 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 35 H 0.35 7.63 8.61 -89.70 -0.77 6.85 16 36 H 0.03 0.96 6.26 -2.39 -0.01 0.94 16 37 H 0.07 2.14 6.29 -2.39 -0.02 2.13 16 38 H 0.11 2.77 7.40 -2.39 -0.02 2.75 16 39 H 0.11 2.48 8.11 -2.39 -0.02 2.46 16 40 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 41 H 0.06 2.06 8.07 -2.39 -0.02 2.04 16 42 H 0.09 2.17 6.44 -2.39 -0.02 2.15 16 43 H 0.02 1.22 8.07 -2.39 -0.02 1.20 16 44 H 0.00 -0.17 7.42 -2.39 -0.02 -0.19 16 45 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 46 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 47 H 0.09 0.68 8.12 -2.39 -0.02 0.66 16 48 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 49 H 0.20 1.67 8.06 -2.91 -0.02 1.65 16 Total: -1.00 -75.49 400.51 1.87 -73.62 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: 0.14 Total: 19.35 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: 7.26 Total: 4.03 kcal Atomic # 7 Polarization: -108.50 SS G_CDS: -6.44 Total: -114.94 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -0.05 Total: -30.98 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.37 kcal Atomic # 16 Polarization: 2.63 SS G_CDS: -1.07 Total: 1.55 kcal Total: -75.49 1.87 -73.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131912021.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.053 kcal (2) G-P(sol) polarization free energy of solvation -75.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds