Wall clock time and date at job start Tue Mar 31 2020 23:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47064 * 2 1 4 4 C 1.52996 * 109.47188 * 239.99682 * 2 1 3 5 5 O 1.45200 * 109.46810 * 119.99975 * 2 1 3 6 6 C 1.34635 * 117.00101 * 59.99935 * 5 2 1 7 7 O 1.21513 * 120.00309 * 0.02562 * 6 5 2 8 8 N 1.34782 * 120.00152 * 179.97438 * 6 5 2 9 9 C 1.47582 * 134.49083 * 180.02562 * 8 6 5 10 10 C 1.53953 * 86.11521 * 155.35750 * 9 8 6 11 11 C 1.52991 * 113.74225 * 137.94874 * 10 9 8 12 12 C 1.50698 * 109.47250 * 176.92468 * 11 10 9 13 13 O 1.20826 * 120.00041 * 5.60532 * 12 11 10 14 14 O 1.34234 * 120.00090 * 185.60536 * 12 11 10 15 15 C 1.45198 * 116.99869 * 185.17788 * 14 12 11 16 16 C 1.53002 * 109.47222 * 183.67499 * 15 14 12 17 17 C 1.50697 * 115.54897 * 294.97657 * 16 15 14 18 18 H 1.07997 * 120.00507 * 114.83818 * 17 16 15 19 19 C 1.37884 * 119.99833 * 294.56745 * 17 16 15 20 20 N 1.31507 * 120.00209 * 174.20756 * 19 17 16 21 21 Si 1.86800 * 119.99781 * 354.21026 * 19 17 16 22 22 H 1.48496 * 109.47337 * 93.27792 * 21 19 17 23 23 H 1.48495 * 109.47028 * 213.28182 * 21 19 17 24 24 H 1.48503 * 109.47026 * 333.27781 * 21 19 17 25 25 C 1.53004 * 117.49876 * 80.64080 * 16 15 14 26 26 C 1.52993 * 117.50201 * 149.30230 * 16 15 14 27 27 C 1.47810 * 134.45623 * 359.86990 * 8 6 5 28 28 H 1.08991 * 109.47231 * 300.00051 * 1 2 3 29 29 H 1.09004 * 109.47181 * 59.99841 * 1 2 3 30 30 H 1.09005 * 109.47380 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47127 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47513 * 299.99652 * 3 2 1 33 33 H 1.09004 * 109.47508 * 59.99938 * 3 2 1 34 34 H 1.09005 * 109.47329 * 300.00483 * 4 2 1 35 35 H 1.09002 * 109.46918 * 60.00636 * 4 2 1 36 36 H 1.08997 * 109.47027 * 180.02562 * 4 2 1 37 37 H 1.08991 * 113.77018 * 41.05454 * 9 8 6 38 38 H 1.08995 * 113.76502 * 269.65478 * 9 8 6 39 39 H 1.08989 * 113.74046 * 269.15522 * 10 9 8 40 40 H 1.08999 * 109.46926 * 56.92591 * 11 10 9 41 41 H 1.08999 * 109.47503 * 296.92830 * 11 10 9 42 42 H 1.08994 * 109.47475 * 63.67285 * 15 14 12 43 43 H 1.09004 * 109.46884 * 303.66882 * 15 14 12 44 44 H 0.97002 * 120.00242 * 180.02562 * 20 19 17 45 45 H 1.09001 * 117.49501 * 215.00766 * 25 16 15 46 46 H 1.08998 * 117.49784 * 0.02829 * 25 16 15 47 47 H 1.09004 * 117.49689 * 359.97438 * 26 16 15 48 48 H 1.09002 * 117.50244 * 144.97467 * 26 16 15 49 49 H 1.08997 * 113.77057 * 90.37518 * 27 8 6 50 50 H 1.09005 * 113.83031 * 318.91498 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0139 -0.6845 1.1856 6 6 1.6521 -1.9723 1.3384 7 8 0.9515 -2.5097 0.5036 8 7 2.0679 -2.6657 2.4167 9 6 1.8731 -4.0480 2.8956 10 6 3.1945 -3.8573 3.6622 11 6 3.1700 -4.4249 5.0828 12 6 4.5272 -4.2547 5.7152 13 8 5.3924 -3.6438 5.1338 14 8 4.7749 -4.7819 6.9246 15 6 6.0633 -4.4817 7.5232 16 6 6.1994 -5.2374 8.8465 17 6 5.2350 -4.8292 9.9302 18 1 4.4938 -5.5298 10.2855 19 6 5.3025 -3.5632 10.4721 20 7 4.3919 -3.1676 11.3346 21 14 6.6875 -2.4098 9.9812 22 1 6.2436 -1.5567 8.8497 23 1 7.0490 -1.5504 11.1370 24 1 7.8708 -3.2055 9.5668 25 6 6.6046 -6.7113 8.7800 26 6 7.6047 -5.6637 9.2754 27 6 2.9045 -2.3471 3.5929 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1301 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6766 -1.7490 -1.2492 35 1 1.6768 -0.2074 -2.1392 36 1 3.1300 -0.7217 -1.2489 37 1 1.9273 -4.7980 2.1066 38 1 1.0041 -4.1706 3.5419 39 1 4.0766 -4.1608 3.0986 40 1 2.9163 -5.4843 5.0464 41 1 2.4244 -3.8929 5.6738 42 1 6.1374 -3.4100 7.7075 43 1 6.8594 -4.7898 6.8454 44 1 4.4392 -2.2768 11.7155 45 1 6.1737 -7.3856 9.5200 46 1 6.7748 -7.1424 7.7934 47 1 8.4324 -5.4061 8.6145 48 1 7.8320 -5.6485 10.3414 49 1 2.3392 -1.9688 4.4446 50 1 3.7805 -1.7419 3.3594 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153267197.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:28:39 Heat of formation + Delta-G solvation = -125.308970 kcal Electronic energy + Delta-G solvation = -29708.155242 eV Core-core repulsion = 25509.351995 eV Total energy + Delta-G solvation = -4198.803247 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.02144 -41.42356 -40.23026 -38.73416 -37.66849 -36.92739 -35.10656 -34.26849 -33.00400 -29.57304 -28.39894 -28.39243 -28.33856 -27.30577 -27.09255 -23.71517 -23.21251 -22.11571 -21.08352 -20.95472 -20.30550 -18.86474 -18.71183 -18.43684 -17.81278 -17.57800 -17.57149 -17.01498 -16.72153 -16.28794 -15.88041 -15.46309 -15.29961 -15.11842 -14.90940 -14.66491 -14.31098 -14.22097 -13.80238 -13.68220 -13.49296 -13.37327 -13.16246 -13.00955 -12.98018 -12.90683 -12.88985 -12.77555 -12.61674 -12.36572 -12.26242 -12.18673 -12.09694 -11.84061 -11.68505 -11.50732 -11.43247 -11.29950 -11.10089 -10.96428 -10.60517 -10.36632 -9.89667 -8.29207 -6.32801 0.93957 1.27364 1.30705 1.37148 1.47035 1.67985 1.84171 2.34168 2.66107 2.98357 3.21114 3.35716 3.68696 3.71888 3.75480 3.79202 3.91062 3.94540 4.00473 4.17347 4.20802 4.26957 4.39311 4.43561 4.46919 4.51654 4.56399 4.58207 4.61192 4.66508 4.72174 4.72484 4.76064 4.79260 4.83531 4.89813 4.89948 5.01559 5.08152 5.20640 5.23879 5.24699 5.28805 5.44695 5.50113 5.67278 5.71543 6.31862 6.52367 6.71873 6.86391 7.18894 7.33201 8.86231 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.018057 B = 0.002190 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.267693 B =12782.958224 C =13376.243190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.121 3.879 3 C -0.136 4.136 4 C -0.178 4.178 5 O -0.373 6.373 6 C 0.666 3.334 7 O -0.593 6.593 8 N -0.640 5.640 9 C 0.143 3.857 10 C -0.098 4.098 11 C -0.097 4.097 12 C 0.449 3.551 13 O -0.546 6.546 14 O -0.347 6.347 15 C 0.111 3.889 16 C -0.043 4.043 17 C -0.473 4.473 18 H 0.037 0.963 19 C 0.026 3.974 20 N -0.943 5.943 21 Si 0.915 3.085 22 H -0.281 1.281 23 H -0.291 1.291 24 H -0.220 1.220 25 C -0.156 4.156 26 C -0.172 4.172 27 C 0.107 3.893 28 H 0.059 0.941 29 H 0.093 0.907 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.106 0.894 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.094 0.906 36 H 0.058 0.942 37 H 0.098 0.902 38 H 0.118 0.882 39 H 0.107 0.893 40 H 0.145 0.855 41 H 0.130 0.870 42 H 0.040 0.960 43 H 0.071 0.929 44 H 0.265 0.735 45 H 0.084 0.916 46 H 0.103 0.897 47 H 0.099 0.901 48 H 0.086 0.914 49 H 0.103 0.897 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.348 3.247 -22.819 23.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.085 3.915 3 C -0.193 4.193 4 C -0.235 4.235 5 O -0.288 6.288 6 C 0.422 3.578 7 O -0.485 6.485 8 N -0.383 5.383 9 C 0.023 3.977 10 C -0.117 4.117 11 C -0.134 4.134 12 C 0.294 3.706 13 O -0.437 6.437 14 O -0.262 6.262 15 C 0.037 3.963 16 C -0.044 4.044 17 C -0.511 4.511 18 H 0.055 0.945 19 C -0.172 4.172 20 N -0.583 5.583 21 Si 0.740 3.260 22 H -0.208 1.208 23 H -0.218 1.218 24 H -0.142 1.142 25 C -0.193 4.193 26 C -0.210 4.210 27 C -0.015 4.015 28 H 0.078 0.922 29 H 0.112 0.888 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.124 0.876 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.112 0.888 36 H 0.077 0.923 37 H 0.116 0.884 38 H 0.136 0.864 39 H 0.125 0.875 40 H 0.163 0.837 41 H 0.148 0.852 42 H 0.059 0.941 43 H 0.090 0.910 44 H 0.074 0.926 45 H 0.102 0.898 46 H 0.121 0.879 47 H 0.117 0.883 48 H 0.104 0.896 49 H 0.121 0.879 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.402 3.567 -23.330 24.008 hybrid contribution 0.433 0.966 0.360 1.118 sum -3.969 4.534 -22.970 23.747 Atomic orbital electron populations 1.22454 0.93710 1.03664 1.03612 1.22464 0.94826 0.92675 0.81558 1.21890 1.02255 0.90844 1.04340 1.22461 1.01432 1.02233 0.97364 1.86341 1.71811 1.23159 1.47488 1.17732 0.77915 0.80483 0.81629 1.90871 1.42536 1.71012 1.44073 1.48914 1.53644 1.15359 1.20363 1.23451 0.97414 0.80403 0.96402 1.22854 0.99267 0.94817 0.94742 1.21453 0.90151 1.07591 0.94232 1.24581 0.91940 0.74763 0.79285 1.90612 1.48777 1.40481 1.63836 1.86592 1.39142 1.67811 1.32665 1.22711 0.81927 0.98420 0.93254 1.19269 0.96060 0.96482 0.92565 1.20358 1.14963 0.98223 1.17509 0.94465 1.25670 0.97584 0.99333 0.94639 1.70023 1.35982 1.19969 1.32337 0.86241 0.82750 0.79499 0.77469 1.20761 1.21814 1.14234 1.22853 1.02992 0.91397 1.02027 1.23132 0.92280 1.04257 1.01303 1.23551 0.93632 0.97718 0.86580 0.92209 0.88779 0.91916 0.91580 0.87575 0.91495 0.91909 0.88762 0.92323 0.88397 0.86427 0.87462 0.83717 0.85182 0.94134 0.91048 0.92570 0.89762 0.87883 0.88287 0.89577 0.87949 0.90455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.21 8.37 71.98 0.60 -2.61 16 2 C 0.12 2.32 1.13 -10.80 -0.01 2.31 16 3 C -0.14 -1.82 8.85 71.98 0.64 -1.19 16 4 C -0.18 -3.26 8.37 71.98 0.60 -2.65 16 5 O -0.37 -9.42 9.87 -55.44 -0.55 -9.96 16 6 C 0.67 17.88 8.22 129.79 1.07 18.94 16 7 O -0.59 -17.85 12.61 19.80 0.25 -17.60 16 8 N -0.64 -14.34 3.61 -966.37 -3.49 -17.83 16 9 C 0.14 2.20 8.41 86.49 0.73 2.93 16 10 C -0.10 -1.71 3.24 -10.14 -0.03 -1.74 16 11 C -0.10 -1.78 5.65 29.84 0.17 -1.62 16 12 C 0.45 13.85 7.94 71.24 0.57 14.42 16 13 O -0.55 -19.24 15.54 21.96 0.34 -18.90 16 14 O -0.35 -13.24 10.15 -51.46 -0.52 -13.77 16 15 C 0.11 4.52 5.00 71.98 0.36 4.87 16 16 C -0.04 -1.87 1.06 -52.93 -0.06 -1.93 16 17 C -0.47 -25.82 9.33 25.60 0.24 -25.58 16 18 H 0.04 2.28 8.06 -2.91 -0.02 2.26 16 19 C 0.03 1.44 5.47 84.66 0.46 1.91 16 20 N -0.94 -57.32 13.96 21.45 0.30 -57.02 16 21 Si 0.92 42.70 24.98 68.60 1.71 44.41 16 22 H -0.28 -13.12 7.02 99.48 0.70 -12.42 16 23 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 24 H -0.22 -9.11 5.72 99.48 0.57 -8.54 16 25 C -0.16 -5.63 9.96 30.62 0.30 -5.33 16 26 C -0.17 -6.41 8.02 30.62 0.25 -6.17 16 27 C 0.11 2.19 8.45 86.44 0.73 2.92 16 28 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 30 H 0.06 1.47 5.88 -2.38 -0.01 1.46 16 31 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 32 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.06 1.49 5.88 -2.38 -0.01 1.47 16 35 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.12 1.29 8.10 -2.39 -0.02 1.27 16 39 H 0.11 2.11 7.83 -2.39 -0.02 2.09 16 40 H 0.15 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.13 2.07 7.88 -2.39 -0.02 2.06 16 42 H 0.04 1.79 5.07 -2.39 -0.01 1.78 16 43 H 0.07 2.58 7.95 -2.38 -0.02 2.56 16 44 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 45 H 0.08 3.10 8.14 -2.39 -0.02 3.09 16 46 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 47 H 0.10 3.16 8.14 -2.38 -0.02 3.14 16 48 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 49 H 0.10 1.85 7.92 -2.39 -0.02 1.84 16 50 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 Total: -1.00 -74.62 404.91 5.43 -69.19 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: 0.77 Total: 21.99 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: 6.61 Total: -0.51 kcal Atomic # 7 Polarization: -71.66 SS G_CDS: -3.19 Total: -74.85 kcal Atomic # 8 Polarization: -59.75 SS G_CDS: -0.48 Total: -60.23 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 1.71 Total: 44.41 kcal Total: -74.62 5.43 -69.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153267197.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.121 kcal (2) G-P(sol) polarization free energy of solvation -74.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds