Wall clock time and date at job start Tue Mar 31 2020 22:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34483 * 126.16040 * 2 1 4 4 C 1.30261 * 108.69875 * 180.02562 * 3 2 1 5 5 C 1.50691 * 125.61954 * 179.97438 * 4 3 2 6 6 N 1.46907 * 109.47024 * 89.99874 * 5 4 3 7 7 C 1.46957 * 110.99669 * 189.99755 * 6 5 4 8 8 C 1.53056 * 109.36272 * 176.81142 * 7 6 5 9 9 N 1.46963 * 109.36215 * 58.40123 * 8 7 6 10 10 C 1.46897 * 110.99878 * 176.81273 * 9 8 7 11 11 C 1.53001 * 109.47090 * 170.00330 * 10 9 8 12 12 C 1.53004 * 109.47003 * 179.97438 * 11 10 9 13 13 S 1.81003 * 109.46981 * 179.97438 * 12 11 10 14 14 C 1.76193 * 99.99835 * 180.02562 * 13 12 11 15 15 H 1.07997 * 120.00160 * 0.02562 * 14 13 12 16 16 C 1.38798 * 120.00053 * 180.02562 * 14 13 12 17 17 N 1.31626 * 119.99918 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00320 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47118 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47379 * 120.00029 * 18 16 14 21 21 H 1.48500 * 109.47377 * 240.00065 * 18 16 14 22 22 C 1.46953 * 110.88176 * 300.68256 * 9 8 7 23 23 C 1.46954 * 111.00025 * 66.20277 * 6 5 4 24 24 O 1.33974 * 108.75956 * 0.22915 * 4 3 2 25 25 C 1.34325 * 126.17014 * 180.02562 * 2 1 3 26 26 C 1.50704 * 126.44119 * 359.97438 * 25 2 1 27 27 H 1.08998 * 109.47001 * 89.97657 * 1 2 3 28 28 H 1.09003 * 109.46637 * 209.97342 * 1 2 3 29 29 H 1.08997 * 109.46853 * 329.96854 * 1 2 3 30 30 H 1.09002 * 109.47644 * 330.00168 * 5 4 3 31 31 H 1.08998 * 109.47248 * 209.99597 * 5 4 3 32 32 H 1.09000 * 109.48960 * 56.85040 * 7 6 5 33 33 H 1.08993 * 109.51060 * 296.79238 * 7 6 5 34 34 H 1.08994 * 109.49121 * 178.37113 * 8 7 6 35 35 H 1.08998 * 109.48697 * 298.43883 * 8 7 6 36 36 H 1.09004 * 109.47294 * 290.00189 * 10 9 8 37 37 H 1.08998 * 109.47397 * 49.99983 * 10 9 8 38 38 H 1.09001 * 109.46475 * 299.99875 * 11 10 9 39 39 H 1.08999 * 109.46659 * 60.00008 * 11 10 9 40 40 H 1.08992 * 109.47121 * 300.00089 * 12 11 10 41 41 H 1.09001 * 109.46654 * 60.00120 * 12 11 10 42 42 H 0.96998 * 120.00497 * 180.02562 * 17 16 14 43 43 H 1.09002 * 109.48895 * 299.35175 * 22 9 8 44 44 H 1.08999 * 109.50698 * 179.29562 * 22 9 8 45 45 H 1.09010 * 109.48735 * 303.15856 * 23 6 5 46 46 H 1.09006 * 109.49174 * 63.21596 * 23 6 5 47 47 H 1.08998 * 109.46910 * 90.00214 * 26 25 2 48 48 H 1.09001 * 109.47305 * 210.00086 * 26 25 2 49 49 H 1.08997 * 109.47276 * 330.00265 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3005 1.0858 0.0000 4 6 3.5431 0.6949 -0.0006 5 6 4.7479 1.6001 -0.0013 6 7 5.1400 1.8945 1.3835 7 6 6.1558 2.9555 1.4289 8 6 6.4783 3.2872 2.8879 9 7 6.9556 2.0756 3.5690 10 6 7.3477 2.3699 4.9537 11 6 7.5992 1.0594 5.7021 12 6 8.0083 1.3660 7.1442 13 16 8.3051 -0.1844 8.0298 14 6 8.7459 0.4478 9.6142 15 1 8.7662 1.5142 9.7835 16 6 9.0672 -0.4247 10.6447 17 7 9.0430 -1.7244 10.4382 18 14 9.5353 0.2455 12.3243 19 1 9.4883 1.7295 12.2958 20 1 8.5808 -0.2609 13.3430 21 1 10.9095 -0.1991 12.6694 22 6 5.9400 1.0145 3.5234 23 6 5.6175 0.6829 2.0646 24 8 3.5735 -0.6445 -0.0060 25 6 2.2998 -1.0844 -0.0005 26 6 1.8494 -2.5225 -0.0006 27 1 -0.3633 0.0004 -1.0277 28 1 -0.3633 -0.8903 0.5134 29 1 -0.3633 0.8897 0.5143 30 1 4.5036 2.5298 -0.5151 31 1 5.5727 1.1067 -0.5154 32 1 5.7740 3.8460 0.9295 33 1 7.0603 2.6154 0.9248 34 1 7.2524 4.0536 2.9241 35 1 5.5799 3.6535 3.3847 36 1 8.2584 2.9690 4.9540 37 1 6.5490 2.9230 5.4478 38 1 6.6885 0.4604 5.7018 39 1 8.3981 0.5064 5.2080 40 1 8.9190 1.9648 7.1440 41 1 7.2097 1.9192 7.6385 42 1 9.2671 -2.3343 11.1585 43 1 5.0354 1.3550 4.0275 44 1 6.3213 0.1239 4.0230 45 1 4.8433 -0.0836 2.0283 46 1 6.5159 0.3165 1.5677 47 1 1.7405 -2.8690 -1.0283 48 1 2.5903 -3.1354 0.5129 49 1 0.8917 -2.6034 0.5135 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173883368.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:37 Heat of formation + Delta-G solvation = 21.300513 kcal Electronic energy + Delta-G solvation = -26552.735705 eV Core-core repulsion = 22835.335544 eV Total energy + Delta-G solvation = -3717.400161 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.60696 -39.58335 -36.52394 -35.43499 -33.65287 -32.58819 -32.39421 -31.08485 -29.75324 -29.15498 -26.59315 -25.59824 -24.59250 -24.08655 -23.34492 -21.81397 -20.83738 -20.79009 -19.80705 -17.51216 -17.32762 -16.89820 -16.27305 -15.65701 -15.32200 -15.14052 -14.90440 -14.80887 -14.74822 -14.43423 -14.24519 -13.84652 -13.72658 -13.59351 -13.37689 -13.20142 -12.90626 -12.72914 -12.64275 -12.39598 -12.29974 -11.93193 -11.66844 -11.57975 -11.42548 -11.25691 -11.08266 -10.98646 -10.92805 -10.71389 -10.70479 -10.57051 -10.27512 -9.50939 -9.05953 -8.89086 -8.69622 -8.32179 -8.28908 -6.51878 -6.22247 -3.92200 1.12891 2.29755 2.39738 3.21372 3.22604 3.30405 3.53112 3.55363 3.72350 3.90455 4.23209 4.40509 4.49948 4.60678 4.71339 4.75881 4.88997 4.92039 4.99216 5.07458 5.13825 5.16330 5.20784 5.24172 5.27812 5.32155 5.35298 5.37202 5.39709 5.45560 5.55473 5.60460 5.68590 5.71764 5.75659 5.81378 5.82683 5.84621 5.98752 6.07411 6.13018 6.32852 6.53139 6.58684 6.63142 6.73963 7.04387 7.07245 7.52501 7.61695 8.37744 9.24231 10.86032 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015522 B = 0.001898 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.437346 B =14750.552569 C =15948.784378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.018 4.018 3 N -0.463 5.463 4 C 0.199 3.801 5 C 0.154 3.846 6 N -0.535 5.535 7 C 0.062 3.938 8 C 0.057 3.943 9 N -0.539 5.539 10 C 0.061 3.939 11 C -0.101 4.101 12 C -0.112 4.112 13 S -0.134 6.134 14 C -0.515 4.515 15 H 0.073 0.927 16 C 0.070 3.930 17 N -0.870 5.870 18 Si 0.918 3.082 19 H -0.272 1.272 20 H -0.280 1.280 21 H -0.280 1.280 22 C 0.052 3.948 23 C 0.056 3.944 24 O -0.201 6.201 25 C -0.050 4.050 26 C -0.068 4.068 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.116 0.884 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.048 0.952 34 H 0.082 0.918 35 H 0.043 0.957 36 H 0.076 0.924 37 H 0.034 0.966 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.061 0.939 41 H 0.058 0.942 42 H 0.266 0.734 43 H 0.042 0.958 44 H 0.093 0.907 45 H 0.075 0.925 46 H 0.048 0.952 47 H 0.083 0.917 48 H 0.079 0.921 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.347 4.520 -25.589 29.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.138 4.138 3 N -0.193 5.193 4 C -0.009 4.009 5 C 0.026 3.974 6 N -0.262 5.262 7 C -0.066 4.066 8 C -0.072 4.072 9 N -0.264 5.264 10 C -0.068 4.068 11 C -0.139 4.139 12 C -0.261 4.261 13 S 0.094 5.906 14 C -0.663 4.663 15 H 0.091 0.909 16 C -0.139 4.139 17 N -0.506 5.506 18 Si 0.745 3.255 19 H -0.196 1.196 20 H -0.206 1.206 21 H -0.206 1.206 22 C -0.076 4.076 23 C -0.072 4.072 24 O -0.088 6.088 25 C -0.103 4.103 26 C -0.124 4.124 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.134 0.866 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.066 0.934 34 H 0.100 0.900 35 H 0.061 0.939 36 H 0.094 0.906 37 H 0.052 0.948 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.060 0.940 44 H 0.111 0.889 45 H 0.093 0.907 46 H 0.067 0.933 47 H 0.101 0.899 48 H 0.098 0.902 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -13.530 3.874 -25.862 29.443 hybrid contribution 0.585 0.959 1.594 1.950 sum -12.945 4.833 -24.268 27.926 Atomic orbital electron populations 1.20105 0.86541 1.03379 1.02673 1.21549 0.97978 0.87737 1.06566 1.70327 1.00412 1.31202 1.17321 1.25860 0.95280 0.78778 1.00968 1.20338 0.89466 0.96265 0.91377 1.62107 1.41181 1.09547 1.13348 1.22164 0.92907 0.94210 0.97295 1.22140 0.99115 0.92557 0.93375 1.62249 1.39446 1.08067 1.16663 1.22185 1.00085 0.98151 0.86366 1.21429 1.02241 0.96279 0.93958 1.23225 1.02378 1.03257 0.97265 1.84611 1.89400 1.06716 1.09830 1.22730 1.52993 0.95096 0.95474 0.90915 1.25022 0.95018 0.94695 0.99150 1.70030 1.46018 1.01519 1.32986 0.86110 0.78209 0.79034 0.82153 1.19611 1.20584 1.20570 1.22264 0.93771 0.96375 0.95230 1.22273 0.98894 0.91239 0.94794 1.84399 1.30227 1.24152 1.70036 1.23196 0.80814 0.98285 1.08014 1.20280 1.02091 0.86425 1.03638 0.90844 0.90768 0.90567 0.86582 0.91685 0.89888 0.93366 0.89985 0.93878 0.90582 0.94807 0.91458 0.90758 0.92051 0.92322 0.92380 0.93974 0.88866 0.90669 0.93332 0.89890 0.90178 0.88984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.22 36.01 0.37 -0.13 16 2 C -0.02 -0.20 7.11 -82.81 -0.59 -0.78 16 3 N -0.46 -5.81 11.29 -7.36 -0.08 -5.90 16 4 C 0.20 2.25 6.92 -12.95 -0.09 2.16 16 5 C 0.15 1.36 5.59 -4.98 -0.03 1.34 16 6 N -0.54 -5.51 4.70 -235.91 -1.11 -6.62 16 7 C 0.06 0.54 5.61 -3.76 -0.02 0.52 16 8 C 0.06 0.59 5.58 -3.76 -0.02 0.57 16 9 N -0.54 -6.73 4.86 -234.47 -1.14 -7.87 16 10 C 0.06 0.84 5.28 -3.83 -0.02 0.82 16 11 C -0.10 -1.66 4.48 -26.73 -0.12 -1.78 16 12 C -0.11 -2.28 5.67 37.16 0.21 -2.07 16 13 S -0.13 -3.54 21.44 -107.50 -2.30 -5.84 16 14 C -0.51 -14.91 9.50 30.94 0.29 -14.61 16 15 H 0.07 2.05 7.80 -52.49 -0.41 1.64 16 16 C 0.07 2.01 5.49 -17.43 -0.10 1.91 16 17 N -0.87 -26.17 13.22 55.49 0.73 -25.44 16 18 Si 0.92 21.71 29.55 -169.99 -5.02 16.69 16 19 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 C 0.05 0.65 4.92 -3.77 -0.02 0.63 16 23 C 0.06 0.63 5.44 -3.77 -0.02 0.61 16 24 O -0.20 -2.29 10.09 5.35 0.05 -2.24 16 25 C -0.05 -0.49 7.39 -35.69 -0.26 -0.76 16 26 C -0.07 -0.39 10.22 36.01 0.37 -0.02 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.37 7.17 -51.93 -0.37 0.00 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.12 0.85 8.03 -51.93 -0.42 0.43 16 31 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 32 H 0.08 0.58 8.07 -51.93 -0.42 0.16 16 33 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.03 0.47 8.08 -51.93 -0.42 0.05 16 38 H 0.07 1.12 6.26 -51.93 -0.33 0.80 16 39 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.06 1.24 8.14 -51.92 -0.42 0.81 16 41 H 0.06 1.19 8.14 -51.91 -0.42 0.77 16 42 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 43 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.09 1.23 5.99 -51.93 -0.31 0.92 16 45 H 0.07 0.90 6.66 -51.92 -0.35 0.55 16 46 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.09 0.37 7.17 -51.93 -0.37 0.00 16 LS Contribution 403.38 15.07 6.08 6.08 Total: -1.00 -34.02 403.38 -11.28 -45.30 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -8.44 Total: -2.56 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: -0.05 Total: -11.60 kcal Atomic # 7 Polarization: -44.23 SS G_CDS: -1.60 Total: -45.83 kcal Atomic # 8 Polarization: -2.29 SS G_CDS: 0.05 Total: -2.24 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -2.30 Total: -5.84 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.02 -11.28 -45.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173883368.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.601 kcal (2) G-P(sol) polarization free energy of solvation -34.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds