Wall clock time and date at job start Tue Mar 31 2020 22:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34483 * 126.16040 * 2 1 4 4 C 1.30261 * 108.69875 * 180.02562 * 3 2 1 5 5 C 1.50691 * 125.61954 * 179.97438 * 4 3 2 6 6 N 1.46907 * 109.47024 * 89.99874 * 5 4 3 7 7 C 1.46957 * 110.99669 * 189.99755 * 6 5 4 8 8 C 1.53056 * 109.36272 * 176.81142 * 7 6 5 9 9 N 1.46963 * 109.36215 * 58.40123 * 8 7 6 10 10 C 1.46897 * 110.99878 * 176.81273 * 9 8 7 11 11 C 1.53001 * 109.47090 * 170.00330 * 10 9 8 12 12 C 1.53004 * 109.47003 * 179.97438 * 11 10 9 13 13 S 1.81003 * 109.46981 * 179.97438 * 12 11 10 14 14 C 1.76193 * 99.99835 * 180.02562 * 13 12 11 15 15 H 1.07997 * 120.00160 * 0.02562 * 14 13 12 16 16 C 1.38798 * 120.00053 * 180.02562 * 14 13 12 17 17 N 1.31626 * 119.99918 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00320 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47118 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47379 * 120.00029 * 18 16 14 21 21 H 1.48500 * 109.47377 * 240.00065 * 18 16 14 22 22 C 1.46953 * 110.88176 * 300.68256 * 9 8 7 23 23 C 1.46954 * 111.00025 * 66.20277 * 6 5 4 24 24 O 1.33974 * 108.75956 * 0.22915 * 4 3 2 25 25 C 1.34325 * 126.17014 * 180.02562 * 2 1 3 26 26 C 1.50704 * 126.44119 * 359.97438 * 25 2 1 27 27 H 1.08998 * 109.47001 * 89.97657 * 1 2 3 28 28 H 1.09003 * 109.46637 * 209.97342 * 1 2 3 29 29 H 1.08997 * 109.46853 * 329.96854 * 1 2 3 30 30 H 1.09002 * 109.47644 * 330.00168 * 5 4 3 31 31 H 1.08998 * 109.47248 * 209.99597 * 5 4 3 32 32 H 1.09000 * 109.48960 * 56.85040 * 7 6 5 33 33 H 1.08993 * 109.51060 * 296.79238 * 7 6 5 34 34 H 1.08994 * 109.49121 * 178.37113 * 8 7 6 35 35 H 1.08998 * 109.48697 * 298.43883 * 8 7 6 36 36 H 1.09004 * 109.47294 * 290.00189 * 10 9 8 37 37 H 1.08998 * 109.47397 * 49.99983 * 10 9 8 38 38 H 1.09001 * 109.46475 * 299.99875 * 11 10 9 39 39 H 1.08999 * 109.46659 * 60.00008 * 11 10 9 40 40 H 1.08992 * 109.47121 * 300.00089 * 12 11 10 41 41 H 1.09001 * 109.46654 * 60.00120 * 12 11 10 42 42 H 0.96998 * 120.00497 * 180.02562 * 17 16 14 43 43 H 1.09002 * 109.48895 * 299.35175 * 22 9 8 44 44 H 1.08999 * 109.50698 * 179.29562 * 22 9 8 45 45 H 1.09010 * 109.48735 * 303.15856 * 23 6 5 46 46 H 1.09006 * 109.49174 * 63.21596 * 23 6 5 47 47 H 1.08998 * 109.46910 * 90.00214 * 26 25 2 48 48 H 1.09001 * 109.47305 * 210.00086 * 26 25 2 49 49 H 1.08997 * 109.47276 * 330.00265 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3005 1.0858 0.0000 4 6 3.5431 0.6949 -0.0006 5 6 4.7479 1.6001 -0.0013 6 7 5.1400 1.8945 1.3835 7 6 6.1558 2.9555 1.4289 8 6 6.4783 3.2872 2.8879 9 7 6.9556 2.0756 3.5690 10 6 7.3477 2.3699 4.9537 11 6 7.5992 1.0594 5.7021 12 6 8.0083 1.3660 7.1442 13 16 8.3051 -0.1844 8.0298 14 6 8.7459 0.4478 9.6142 15 1 8.7662 1.5142 9.7835 16 6 9.0672 -0.4247 10.6447 17 7 9.0430 -1.7244 10.4382 18 14 9.5353 0.2455 12.3243 19 1 9.4883 1.7295 12.2958 20 1 8.5808 -0.2609 13.3430 21 1 10.9095 -0.1991 12.6694 22 6 5.9400 1.0145 3.5234 23 6 5.6175 0.6829 2.0646 24 8 3.5735 -0.6445 -0.0060 25 6 2.2998 -1.0844 -0.0005 26 6 1.8494 -2.5225 -0.0006 27 1 -0.3633 0.0004 -1.0277 28 1 -0.3633 -0.8903 0.5134 29 1 -0.3633 0.8897 0.5143 30 1 4.5036 2.5298 -0.5151 31 1 5.5727 1.1067 -0.5154 32 1 5.7740 3.8460 0.9295 33 1 7.0603 2.6154 0.9248 34 1 7.2524 4.0536 2.9241 35 1 5.5799 3.6535 3.3847 36 1 8.2584 2.9690 4.9540 37 1 6.5490 2.9230 5.4478 38 1 6.6885 0.4604 5.7018 39 1 8.3981 0.5064 5.2080 40 1 8.9190 1.9648 7.1440 41 1 7.2097 1.9192 7.6385 42 1 9.2671 -2.3343 11.1585 43 1 5.0354 1.3550 4.0275 44 1 6.3213 0.1239 4.0230 45 1 4.8433 -0.0836 2.0283 46 1 6.5159 0.3165 1.5677 47 1 1.7405 -2.8690 -1.0283 48 1 2.5903 -3.1354 0.5129 49 1 0.8917 -2.6034 0.5135 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173883368.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:36 Heat of formation + Delta-G solvation = -3.606056 kcal Electronic energy + Delta-G solvation = -26553.815735 eV Core-core repulsion = 22835.335544 eV Total energy + Delta-G solvation = -3718.480190 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.37213 -40.48110 -37.49739 -36.20214 -34.66178 -34.52305 -33.57118 -31.97457 -30.47037 -29.87536 -27.95008 -27.37153 -25.52538 -25.05949 -24.27248 -22.60190 -22.04612 -21.54943 -20.75366 -19.56982 -18.17983 -17.66024 -17.21349 -16.91037 -16.61880 -16.33705 -16.20461 -15.93601 -15.82892 -15.37953 -15.14602 -15.04822 -14.77389 -14.50708 -14.19827 -13.89489 -13.82250 -13.66591 -13.51709 -13.29387 -13.18380 -13.14461 -12.95833 -12.94327 -12.78747 -12.60937 -12.42189 -12.28540 -12.07866 -11.98455 -11.76967 -11.61603 -11.50889 -11.28663 -11.16261 -10.32895 -9.62748 -9.46547 -9.30338 -8.68063 -8.38679 -6.14972 0.37769 1.30649 1.37531 1.48617 1.55297 1.68200 1.73089 2.26908 2.79478 2.87796 2.95519 3.00551 3.30895 3.75295 3.79865 3.86114 3.92471 3.99085 4.07278 4.12238 4.18838 4.25187 4.33286 4.35747 4.42689 4.46083 4.47294 4.56376 4.60141 4.64457 4.68296 4.76278 4.80369 4.81042 4.86996 4.87686 4.96689 4.98058 5.00462 5.06018 5.17111 5.17511 5.24853 5.38941 5.42865 5.74543 5.83233 6.04151 6.10060 6.17266 6.74797 7.03594 8.71029 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015522 B = 0.001898 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.437346 B =14750.552569 C =15948.784378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.043 4.043 3 N -0.493 5.493 4 C 0.186 3.814 5 C 0.157 3.843 6 N -0.548 5.548 7 C 0.065 3.935 8 C 0.055 3.945 9 N -0.541 5.541 10 C 0.071 3.929 11 C -0.088 4.088 12 C -0.087 4.087 13 S -0.198 6.198 14 C -0.537 4.537 15 H 0.073 0.927 16 C 0.013 3.987 17 N -0.907 5.907 18 Si 0.996 3.004 19 H -0.263 1.263 20 H -0.271 1.271 21 H -0.271 1.271 22 C 0.055 3.945 23 C 0.066 3.934 24 O -0.215 6.215 25 C -0.057 4.057 26 C -0.067 4.067 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.067 0.933 30 H 0.133 0.867 31 H 0.081 0.919 32 H 0.107 0.893 33 H 0.055 0.945 34 H 0.100 0.900 35 H 0.033 0.967 36 H 0.087 0.913 37 H 0.034 0.966 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.059 0.941 42 H 0.271 0.729 43 H 0.027 0.973 44 H 0.081 0.919 45 H 0.063 0.937 46 H 0.051 0.949 47 H 0.101 0.899 48 H 0.080 0.920 49 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.495 5.681 -26.282 30.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.162 4.162 3 N -0.223 5.223 4 C -0.021 4.021 5 C 0.029 3.971 6 N -0.275 5.275 7 C -0.062 4.062 8 C -0.073 4.073 9 N -0.266 5.266 10 C -0.058 4.058 11 C -0.126 4.126 12 C -0.236 4.236 13 S 0.030 5.970 14 C -0.685 4.685 15 H 0.091 0.909 16 C -0.191 4.191 17 N -0.544 5.544 18 Si 0.818 3.182 19 H -0.187 1.187 20 H -0.197 1.197 21 H -0.196 1.196 22 C -0.074 4.074 23 C -0.062 4.062 24 O -0.102 6.102 25 C -0.110 4.110 26 C -0.123 4.123 27 H 0.104 0.896 28 H 0.114 0.886 29 H 0.086 0.914 30 H 0.151 0.849 31 H 0.099 0.901 32 H 0.125 0.875 33 H 0.073 0.927 34 H 0.118 0.882 35 H 0.052 0.948 36 H 0.105 0.895 37 H 0.052 0.948 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.045 0.955 44 H 0.099 0.901 45 H 0.082 0.918 46 H 0.069 0.931 47 H 0.119 0.881 48 H 0.099 0.901 49 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -13.685 5.039 -26.575 30.313 hybrid contribution 0.575 0.602 1.720 1.911 sum -13.111 5.641 -24.855 28.661 Atomic orbital electron populations 1.20209 0.84503 1.04013 1.03702 1.22133 0.99484 0.87582 1.07025 1.70310 1.01278 1.32459 1.18273 1.26341 0.95754 0.79065 1.00948 1.20479 0.89120 0.96821 0.90713 1.62071 1.41759 1.09285 1.14348 1.22216 0.92976 0.94622 0.96367 1.22262 0.99224 0.91850 0.93969 1.62276 1.39537 1.09070 1.15719 1.22020 1.00683 0.96170 0.86911 1.21301 1.01654 0.97912 0.91773 1.23147 1.02581 0.99498 0.98424 1.84630 1.89669 1.12034 1.10648 1.23068 1.53527 0.95296 0.96600 0.90918 1.26093 0.94561 0.94914 1.03575 1.70159 1.46719 1.02965 1.34550 0.84947 0.78181 0.78666 0.76456 1.18651 1.19672 1.19599 1.22181 0.93078 0.95999 0.96094 1.22078 0.98526 0.91619 0.93955 1.84400 1.31219 1.24384 1.70227 1.23963 0.80198 0.99897 1.06912 1.20490 1.02836 0.83939 1.05056 0.89551 0.88608 0.91427 0.84948 0.90136 0.87528 0.92660 0.88229 0.94825 0.89460 0.94766 0.91962 0.91290 0.91586 0.92233 0.91955 0.95496 0.90089 0.91844 0.93123 0.88106 0.90118 0.87067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.89 10.22 71.24 0.73 -0.16 16 2 C -0.04 -0.90 7.11 41.26 0.29 -0.60 16 3 N -0.49 -12.37 11.29 -291.97 -3.30 -15.67 16 4 C 0.19 4.18 6.92 88.34 0.61 4.79 16 5 C 0.16 2.58 5.59 85.55 0.48 3.06 16 6 N -0.55 -10.64 4.70 -900.27 -4.23 -14.87 16 7 C 0.07 1.00 5.61 86.31 0.48 1.48 16 8 C 0.05 1.03 5.58 86.31 0.48 1.51 16 9 N -0.54 -12.87 4.86 -895.72 -4.35 -17.22 16 10 C 0.07 1.87 5.28 86.30 0.46 2.33 16 11 C -0.09 -2.88 4.48 30.60 0.14 -2.74 16 12 C -0.09 -3.55 5.67 71.98 0.41 -3.14 16 13 S -0.20 -10.73 21.44 -56.49 -1.21 -11.94 16 14 C -0.54 -31.44 9.50 67.95 0.65 -30.80 16 15 H 0.07 4.11 7.80 -2.91 -0.02 4.08 16 16 C 0.01 0.77 5.49 84.86 0.47 1.23 16 17 N -0.91 -55.31 13.22 21.65 0.29 -55.03 16 18 Si 1.00 44.36 29.55 68.60 2.03 46.39 16 19 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 20 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 21 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 22 C 0.05 1.38 4.92 86.31 0.43 1.81 16 23 C 0.07 1.47 5.44 86.31 0.47 1.94 16 24 O -0.21 -4.90 10.09 -3.78 -0.04 -4.94 16 25 C -0.06 -1.09 7.39 24.79 0.18 -0.91 16 26 C -0.07 -0.67 10.22 71.24 0.73 0.06 16 27 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.10 0.80 7.17 -2.39 -0.02 0.78 16 29 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.13 1.70 8.03 -2.39 -0.02 1.68 16 31 H 0.08 1.07 8.12 -2.39 -0.02 1.05 16 32 H 0.11 1.17 8.07 -2.39 -0.02 1.15 16 33 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 37 H 0.03 0.90 8.08 -2.39 -0.02 0.88 16 38 H 0.06 2.11 6.26 -2.39 -0.01 2.10 16 39 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 40 H 0.07 2.62 8.14 -2.40 -0.02 2.60 16 41 H 0.06 2.41 8.14 -2.40 -0.02 2.39 16 42 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 43 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.08 2.20 5.99 -2.39 -0.01 2.19 16 45 H 0.06 1.55 6.66 -2.38 -0.02 1.53 16 46 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 47 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 48 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 49 H 0.11 0.66 7.17 -2.39 -0.02 0.64 16 Total: -1.00 -74.73 403.38 -2.91 -77.63 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: 0.92 Total: 15.78 kcal Atomic # 6 Polarization: -27.13 SS G_CDS: 6.99 Total: -20.14 kcal Atomic # 7 Polarization: -91.19 SS G_CDS: -11.60 Total: -102.79 kcal Atomic # 8 Polarization: -4.90 SS G_CDS: -0.04 Total: -4.94 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Atomic # 16 Polarization: -10.73 SS G_CDS: -1.21 Total: -11.94 kcal Total: -74.73 -2.91 -77.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173883368.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.027 kcal (2) G-P(sol) polarization free energy of solvation -74.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds