Wall clock time and date at job start Tue Mar 31 2020 23:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.47329 * 2 1 4 4 C 1.46504 * 119.99808 * 270.00142 * 3 2 1 5 5 C 1.50704 * 109.47167 * 270.00098 * 4 3 2 6 6 H 1.07994 * 119.99675 * 359.97438 * 5 4 3 7 7 C 1.37874 * 119.99996 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00179 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99891 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47027 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47160 * 119.99819 * 9 7 5 12 12 H 1.48506 * 109.46652 * 239.99677 * 9 7 5 13 13 C 1.34767 * 120.00478 * 89.99914 * 3 2 1 14 14 O 1.21281 * 120.00521 * 179.97438 * 13 3 2 15 15 C 1.50707 * 119.99817 * 0.02562 * 13 3 2 16 16 N 1.46899 * 109.47275 * 180.02562 * 15 13 3 17 17 C 1.46899 * 110.99932 * 179.97438 * 16 15 13 18 18 C 1.52994 * 109.47333 * 299.99934 * 17 16 15 19 19 C 1.53002 * 109.47104 * 60.00332 * 17 16 15 20 20 C 1.53002 * 109.47295 * 53.70255 * 19 17 16 21 21 C 1.50705 * 109.46872 * 179.97438 * 17 16 15 22 22 N 1.29027 * 124.91611 * 49.98056 * 21 17 16 23 23 C 1.31785 * 117.12136 * 180.22602 * 22 21 17 24 24 C 1.50697 * 122.74732 * 179.75254 * 23 22 21 25 25 C 1.33634 * 114.50265 * 359.48292 * 23 22 21 26 26 S 1.70982 * 124.91514 * 229.67385 * 21 17 16 27 27 H 1.09001 * 109.47619 * 59.99885 * 1 2 3 28 28 H 1.08999 * 109.47475 * 180.02562 * 1 2 3 29 29 H 1.09010 * 109.47235 * 300.00285 * 1 2 3 30 30 H 1.09006 * 109.46870 * 240.00049 * 2 1 3 31 31 H 1.08995 * 109.47307 * 119.99879 * 2 1 3 32 32 H 1.09003 * 109.47202 * 29.99985 * 4 3 2 33 33 H 1.08996 * 109.47286 * 149.99841 * 4 3 2 34 34 H 0.96999 * 120.00606 * 180.02562 * 8 7 5 35 35 H 1.08996 * 109.47104 * 60.00016 * 15 13 3 36 36 H 1.09001 * 109.47193 * 299.99927 * 15 13 3 37 37 H 1.00900 * 110.99656 * 303.95031 * 16 15 13 38 38 H 1.09005 * 109.47159 * 300.00290 * 18 17 16 39 39 H 1.09000 * 109.47125 * 59.99996 * 18 17 16 40 40 H 1.08998 * 109.47232 * 180.02562 * 18 17 16 41 41 H 1.09001 * 109.47352 * 173.70756 * 19 17 16 42 42 H 1.09002 * 109.46527 * 293.70293 * 19 17 16 43 43 H 1.08997 * 109.46998 * 54.73605 * 20 19 17 44 44 H 1.09003 * 109.46756 * 174.73210 * 20 19 17 45 45 H 1.09005 * 109.46910 * 294.73185 * 20 19 17 46 46 H 1.09000 * 109.47380 * 269.73539 * 24 23 22 47 47 H 1.08997 * 109.47067 * 149.73327 * 24 23 22 48 48 H 1.09007 * 109.47192 * 29.73413 * 24 23 22 49 49 H 1.07993 * 126.04010 * 180.27027 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8349 -1.7039 6 1 4.3428 1.2308 -1.0959 7 6 4.1493 2.3903 -2.8776 8 7 3.3494 3.1264 -3.6177 9 14 5.9138 2.0973 -3.4165 10 1 6.6014 1.2421 -2.4161 11 1 5.9217 1.4187 -4.7374 12 1 6.6210 3.3987 -3.5243 13 6 2.2430 2.0166 1.1671 14 8 2.6477 3.1599 1.1671 15 6 1.9923 1.3060 2.4723 16 7 2.3099 2.2063 3.5888 17 6 2.0763 1.5461 4.8801 18 6 0.6064 1.1350 4.9843 19 6 2.9623 0.3031 4.9850 20 6 4.4191 0.6916 4.7247 21 6 2.4128 2.4980 5.9990 22 7 1.9821 3.7108 6.0915 23 6 2.3779 4.4109 7.1355 24 6 1.9568 5.8393 7.3662 25 6 3.1786 3.7486 7.9757 26 16 3.4144 2.1248 7.3335 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.5816 1.6877 -2.0284 33 1 2.0956 3.1410 -1.1385 34 1 3.6754 3.5169 -4.4436 35 1 2.6228 0.4188 2.5298 36 1 0.9445 1.0115 2.5302 37 1 3.2579 2.5450 3.5217 38 1 -0.0248 2.0206 4.9095 39 1 0.3634 0.4464 4.1750 40 1 0.4330 0.6455 5.9426 41 1 2.8730 -0.1235 5.9841 42 1 2.6448 -0.4327 4.2461 43 1 4.7079 1.4942 5.4033 44 1 5.0611 -0.1734 4.8910 45 1 4.5260 1.0308 3.6943 46 1 2.6759 6.5105 6.8966 47 1 1.9193 6.0386 8.4371 48 1 0.9704 6.0021 6.9316 49 1 3.6057 4.1394 8.8873 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173940727.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:59 Heat of formation + Delta-G solvation = 10.287441 kcal Electronic energy + Delta-G solvation = -28201.852881 eV Core-core repulsion = 24483.975157 eV Total energy + Delta-G solvation = -3717.877723 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.31264 -39.23689 -37.89345 -35.21006 -32.89317 -32.29331 -31.77118 -30.11158 -29.98663 -27.81146 -27.70472 -26.15567 -24.72721 -23.59364 -22.98507 -22.27396 -20.03148 -19.50404 -18.47949 -17.64589 -16.76777 -16.40912 -15.91103 -15.58912 -15.38877 -15.17215 -14.61170 -14.38579 -14.27320 -13.93956 -13.75676 -13.35723 -13.26983 -13.13390 -13.05386 -12.66198 -12.55724 -12.47696 -12.25632 -12.07483 -11.96814 -11.80618 -11.58894 -11.37196 -11.31401 -11.28331 -11.16638 -11.01808 -10.86505 -10.70441 -10.51548 -10.10558 -9.61764 -9.58548 -9.44544 -8.87486 -8.76236 -8.41347 -8.26528 -7.60046 -6.01695 -4.06280 0.58067 1.22394 1.63119 2.72207 3.30521 3.37954 3.41038 3.51355 3.77551 3.81191 4.31034 4.45932 4.50888 4.73542 4.76259 4.94671 5.00548 5.11759 5.13762 5.26383 5.30037 5.32949 5.33529 5.46389 5.47130 5.50190 5.51355 5.55395 5.66992 5.69265 5.71673 5.77685 5.84328 5.84990 6.04054 6.04905 6.10062 6.16951 6.25735 6.51045 6.87317 7.16308 7.40266 7.51080 7.60826 7.75655 7.95402 8.27122 8.49226 8.94248 9.18152 9.58868 11.06337 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013950 B = 0.002908 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.658443 B = 9625.279563 C =10117.941434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.247 3.753 5 C -0.524 4.524 6 H 0.056 0.944 7 C 0.060 3.940 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.505 3.495 14 O -0.526 6.526 15 C 0.037 3.963 16 N -0.644 5.644 17 C 0.194 3.806 18 C -0.135 4.135 19 C -0.163 4.163 20 C -0.169 4.169 21 C 0.071 3.929 22 N -0.439 5.439 23 C 0.068 3.932 24 C -0.079 4.079 25 C -0.276 4.276 26 S 0.114 5.886 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.081 0.919 31 H 0.062 0.938 32 H 0.031 0.969 33 H 0.043 0.957 34 H 0.262 0.738 35 H 0.057 0.943 36 H 0.099 0.901 37 H 0.354 0.646 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.059 0.941 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.061 0.939 44 H 0.065 0.935 45 H 0.062 0.938 46 H 0.076 0.924 47 H 0.071 0.929 48 H 0.077 0.923 49 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.884 -7.215 23.734 25.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.017 4.017 3 N -0.332 5.332 4 C 0.128 3.872 5 C -0.563 4.563 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.290 3.710 14 O -0.402 6.402 15 C -0.096 4.096 16 N -0.278 5.278 17 C 0.098 3.902 18 C -0.194 4.194 19 C -0.203 4.203 20 C -0.226 4.226 21 C -0.209 4.209 22 N -0.153 5.153 23 C -0.064 4.064 24 C -0.139 4.139 25 C -0.415 4.415 26 S 0.370 5.630 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.100 0.900 31 H 0.080 0.920 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.117 0.883 37 H 0.176 0.824 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.091 0.909 42 H 0.103 0.897 43 H 0.080 0.920 44 H 0.084 0.916 45 H 0.081 0.919 46 H 0.095 0.905 47 H 0.090 0.910 48 H 0.096 0.904 49 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -4.062 -6.834 23.456 24.766 hybrid contribution 1.559 0.071 -0.222 1.577 sum -2.502 -6.763 23.233 24.327 Atomic orbital electron populations 1.22232 0.96825 1.01307 1.02449 1.21394 0.93508 0.84367 1.02468 1.48232 1.64182 1.13148 1.07660 1.19246 0.96124 0.93698 0.78117 1.21469 0.96967 1.31708 1.06158 0.92540 1.24934 0.97762 0.94980 0.96464 1.69940 1.35550 1.33511 1.14326 0.86466 0.84781 0.78025 0.78268 1.19883 1.20998 1.20900 1.20133 0.78979 0.87072 0.84801 1.90690 1.44939 1.17684 1.86877 1.22040 1.02627 0.94602 0.90306 1.60194 1.33071 1.36321 0.98217 1.19453 0.96455 0.88084 0.86160 1.21885 0.93298 1.02448 1.01766 1.22429 0.96164 0.98519 1.03221 1.22037 0.95580 1.02318 1.02690 1.26895 0.99023 0.95136 0.99827 1.66054 1.23444 1.04609 1.21152 1.20419 0.97088 0.98597 0.90287 1.20364 1.02739 0.88879 1.01886 1.26897 1.09241 0.97928 1.07400 1.83931 1.47475 1.13423 1.18210 0.91998 0.92262 0.93003 0.90026 0.92008 0.95097 0.93898 0.92808 0.92567 0.88303 0.82437 0.90557 0.91296 0.92204 0.90913 0.89717 0.92008 0.91576 0.91898 0.90520 0.91003 0.90422 0.80933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 10.24 37.16 0.38 -1.86 16 2 C 0.11 1.68 5.93 -4.04 -0.02 1.65 16 3 N -0.60 -12.58 2.46 -175.06 -0.43 -13.01 16 4 C 0.25 6.51 5.16 -5.19 -0.03 6.48 16 5 C -0.52 -14.91 9.39 -34.44 -0.32 -15.23 16 6 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.82 13.29 55.43 0.74 -26.08 16 9 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 10 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 13 C 0.50 10.54 7.71 -10.99 -0.08 10.46 16 14 O -0.53 -13.59 15.78 5.56 0.09 -13.50 16 15 C 0.04 0.54 3.72 -4.97 -0.02 0.52 16 16 N -0.64 -9.77 5.51 -102.39 -0.56 -10.33 16 17 C 0.19 2.27 0.69 -132.75 -0.09 2.18 16 18 C -0.14 -1.41 8.22 37.15 0.31 -1.10 16 19 C -0.16 -1.54 4.00 -26.73 -0.11 -1.65 16 20 C -0.17 -1.73 8.89 37.16 0.33 -1.40 16 21 C 0.07 0.89 5.52 -13.45 -0.07 0.81 16 22 N -0.44 -6.29 10.53 -8.05 -0.08 -6.37 16 23 C 0.07 0.82 6.74 -84.23 -0.57 0.25 16 24 C -0.08 -0.74 10.31 36.00 0.37 -0.36 16 25 C -0.28 -2.75 11.13 29.12 0.32 -2.43 16 26 S 0.11 1.12 19.45 -107.50 -2.09 -0.97 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.65 7.22 -51.92 -0.38 0.28 16 30 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 31 H 0.06 0.79 6.44 -51.93 -0.33 0.45 16 32 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 33 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.06 0.73 5.39 -51.93 -0.28 0.45 16 36 H 0.10 1.29 5.35 -51.93 -0.28 1.01 16 37 H 0.35 5.94 6.74 -39.29 -0.27 5.67 16 38 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.07 0.63 6.40 -51.93 -0.33 0.30 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.59 7.38 -51.93 -0.38 0.20 16 42 H 0.08 0.73 6.76 -51.93 -0.35 0.38 16 43 H 0.06 0.65 5.57 -51.93 -0.29 0.36 16 44 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.76 6.54 -51.93 -0.34 0.42 16 46 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 48 H 0.08 0.76 8.14 -51.92 -0.42 0.34 16 49 H 0.17 1.24 8.06 -52.49 -0.42 0.81 16 LS Contribution 397.63 15.07 5.99 5.99 Total: -1.00 -34.67 397.63 -8.88 -43.55 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -7.80 Total: 3.79 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: 0.30 Total: -0.03 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: -0.34 Total: -55.80 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: 0.09 Total: -13.50 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -2.09 Total: -0.97 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.67 -8.88 -43.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173940727.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.838 kcal (2) G-P(sol) polarization free energy of solvation -34.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds