Wall clock time and date at job start Tue Mar 31 2020 23:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.47329 * 2 1 4 4 C 1.46504 * 119.99808 * 270.00142 * 3 2 1 5 5 C 1.50704 * 109.47167 * 270.00098 * 4 3 2 6 6 H 1.07994 * 119.99675 * 359.97438 * 5 4 3 7 7 C 1.37874 * 119.99996 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00179 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99891 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47027 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47160 * 119.99819 * 9 7 5 12 12 H 1.48506 * 109.46652 * 239.99677 * 9 7 5 13 13 C 1.34767 * 120.00478 * 89.99914 * 3 2 1 14 14 O 1.21281 * 120.00521 * 179.97438 * 13 3 2 15 15 C 1.50707 * 119.99817 * 0.02562 * 13 3 2 16 16 N 1.46899 * 109.47275 * 180.02562 * 15 13 3 17 17 C 1.46899 * 110.99932 * 179.97438 * 16 15 13 18 18 C 1.52994 * 109.47333 * 299.99934 * 17 16 15 19 19 C 1.53002 * 109.47104 * 60.00332 * 17 16 15 20 20 C 1.53002 * 109.47295 * 53.70255 * 19 17 16 21 21 C 1.50705 * 109.46872 * 179.97438 * 17 16 15 22 22 N 1.29027 * 124.91611 * 49.98056 * 21 17 16 23 23 C 1.31785 * 117.12136 * 180.22602 * 22 21 17 24 24 C 1.50697 * 122.74732 * 179.75254 * 23 22 21 25 25 C 1.33634 * 114.50265 * 359.48292 * 23 22 21 26 26 S 1.70982 * 124.91514 * 229.67385 * 21 17 16 27 27 H 1.09001 * 109.47619 * 59.99885 * 1 2 3 28 28 H 1.08999 * 109.47475 * 180.02562 * 1 2 3 29 29 H 1.09010 * 109.47235 * 300.00285 * 1 2 3 30 30 H 1.09006 * 109.46870 * 240.00049 * 2 1 3 31 31 H 1.08995 * 109.47307 * 119.99879 * 2 1 3 32 32 H 1.09003 * 109.47202 * 29.99985 * 4 3 2 33 33 H 1.08996 * 109.47286 * 149.99841 * 4 3 2 34 34 H 0.96999 * 120.00606 * 180.02562 * 8 7 5 35 35 H 1.08996 * 109.47104 * 60.00016 * 15 13 3 36 36 H 1.09001 * 109.47193 * 299.99927 * 15 13 3 37 37 H 1.00900 * 110.99656 * 303.95031 * 16 15 13 38 38 H 1.09005 * 109.47159 * 300.00290 * 18 17 16 39 39 H 1.09000 * 109.47125 * 59.99996 * 18 17 16 40 40 H 1.08998 * 109.47232 * 180.02562 * 18 17 16 41 41 H 1.09001 * 109.47352 * 173.70756 * 19 17 16 42 42 H 1.09002 * 109.46527 * 293.70293 * 19 17 16 43 43 H 1.08997 * 109.46998 * 54.73605 * 20 19 17 44 44 H 1.09003 * 109.46756 * 174.73210 * 20 19 17 45 45 H 1.09005 * 109.46910 * 294.73185 * 20 19 17 46 46 H 1.09000 * 109.47380 * 269.73539 * 24 23 22 47 47 H 1.08997 * 109.47067 * 149.73327 * 24 23 22 48 48 H 1.09007 * 109.47192 * 29.73413 * 24 23 22 49 49 H 1.07993 * 126.04010 * 180.27027 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8349 -1.7039 6 1 4.3428 1.2308 -1.0959 7 6 4.1493 2.3903 -2.8776 8 7 3.3494 3.1264 -3.6177 9 14 5.9138 2.0973 -3.4165 10 1 6.6014 1.2421 -2.4161 11 1 5.9217 1.4187 -4.7374 12 1 6.6210 3.3987 -3.5243 13 6 2.2430 2.0166 1.1671 14 8 2.6477 3.1599 1.1671 15 6 1.9923 1.3060 2.4723 16 7 2.3099 2.2063 3.5888 17 6 2.0763 1.5461 4.8801 18 6 0.6064 1.1350 4.9843 19 6 2.9623 0.3031 4.9850 20 6 4.4191 0.6916 4.7247 21 6 2.4128 2.4980 5.9990 22 7 1.9821 3.7108 6.0915 23 6 2.3779 4.4109 7.1355 24 6 1.9568 5.8393 7.3662 25 6 3.1786 3.7486 7.9757 26 16 3.4144 2.1248 7.3335 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.5816 1.6877 -2.0284 33 1 2.0956 3.1410 -1.1385 34 1 3.6754 3.5169 -4.4436 35 1 2.6228 0.4188 2.5298 36 1 0.9445 1.0115 2.5302 37 1 3.2579 2.5450 3.5217 38 1 -0.0248 2.0206 4.9095 39 1 0.3634 0.4464 4.1750 40 1 0.4330 0.6455 5.9426 41 1 2.8730 -0.1235 5.9841 42 1 2.6448 -0.4327 4.2461 43 1 4.7079 1.4942 5.4033 44 1 5.0611 -0.1734 4.8910 45 1 4.5260 1.0308 3.6943 46 1 2.6759 6.5105 6.8966 47 1 1.9193 6.0386 8.4371 48 1 0.9704 6.0021 6.9316 49 1 3.6057 4.1394 8.8873 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173940727.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:58 Heat of formation + Delta-G solvation = -13.928513 kcal Electronic energy + Delta-G solvation = -28202.902963 eV Core-core repulsion = 24483.975157 eV Total energy + Delta-G solvation = -3718.927806 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.27760 -40.61765 -38.99060 -36.89694 -34.93061 -33.43750 -32.58515 -31.57864 -30.91026 -29.44857 -28.50467 -27.52733 -25.90296 -24.61115 -24.37047 -23.81346 -20.91918 -20.38411 -19.93074 -18.73716 -18.52468 -17.90994 -17.34807 -16.97880 -16.53189 -16.32688 -16.00972 -15.59737 -15.35213 -14.98986 -14.84317 -14.62535 -14.43472 -14.30306 -14.07272 -13.98804 -13.56035 -13.44304 -13.39398 -13.24295 -13.16721 -13.05866 -13.04484 -12.69086 -12.66301 -12.48227 -12.24618 -12.14689 -12.11905 -12.05312 -11.93213 -11.80991 -11.67702 -10.65152 -10.57835 -10.45658 -10.26131 -9.55578 -9.41253 -9.34339 -8.21861 -6.36902 -0.23932 0.43786 0.82068 1.35088 1.37978 1.49462 1.85335 1.89160 2.27625 2.42999 3.01265 3.07338 3.20727 3.63568 3.74413 3.96846 3.98501 4.11166 4.17860 4.28888 4.34500 4.35878 4.40666 4.47349 4.49045 4.64298 4.69713 4.74944 4.76009 4.82818 4.89182 4.95795 4.96279 5.00736 5.01957 5.06876 5.08028 5.23518 5.26198 5.29700 5.37874 5.42442 5.59401 5.85436 5.96742 6.07734 6.20955 6.71955 6.85758 6.94115 7.29570 7.55358 8.85373 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013950 B = 0.002908 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.658443 B = 9625.279563 C =10117.941434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.099 3.901 3 N -0.604 5.604 4 C 0.264 3.736 5 C -0.539 4.539 6 H 0.054 0.946 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.968 3.032 10 H -0.265 1.265 11 H -0.268 1.268 12 H -0.284 1.284 13 C 0.494 3.506 14 O -0.589 6.589 15 C 0.057 3.943 16 N -0.666 5.666 17 C 0.192 3.808 18 C -0.133 4.133 19 C -0.157 4.157 20 C -0.168 4.168 21 C 0.044 3.956 22 N -0.482 5.482 23 C 0.038 3.962 24 C -0.077 4.077 25 C -0.271 4.271 26 S 0.163 5.837 27 H 0.035 0.965 28 H 0.098 0.902 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.103 0.897 32 H 0.021 0.979 33 H -0.009 1.009 34 H 0.266 0.734 35 H 0.086 0.914 36 H 0.125 0.875 37 H 0.340 0.660 38 H 0.049 0.951 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.054 0.946 44 H 0.084 0.916 45 H 0.038 0.962 46 H 0.073 0.927 47 H 0.099 0.901 48 H 0.064 0.936 49 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.110 -10.340 26.085 28.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.023 4.023 3 N -0.336 5.336 4 C 0.142 3.858 5 C -0.578 4.578 6 H 0.072 0.928 7 C -0.194 4.194 8 N -0.570 5.570 9 Si 0.793 3.207 10 H -0.189 1.189 11 H -0.193 1.193 12 H -0.210 1.210 13 C 0.282 3.718 14 O -0.469 6.469 15 C -0.075 4.075 16 N -0.299 5.299 17 C 0.098 3.902 18 C -0.192 4.192 19 C -0.197 4.197 20 C -0.226 4.226 21 C -0.235 4.235 22 N -0.197 5.197 23 C -0.094 4.094 24 C -0.136 4.136 25 C -0.410 4.410 26 S 0.419 5.581 27 H 0.054 0.946 28 H 0.116 0.884 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.121 0.879 32 H 0.039 0.961 33 H 0.009 0.991 34 H 0.075 0.925 35 H 0.104 0.896 36 H 0.142 0.858 37 H 0.160 0.840 38 H 0.069 0.931 39 H 0.104 0.896 40 H 0.099 0.901 41 H 0.112 0.888 42 H 0.119 0.881 43 H 0.073 0.927 44 H 0.103 0.897 45 H 0.057 0.943 46 H 0.092 0.908 47 H 0.118 0.882 48 H 0.083 0.917 49 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -3.324 -10.027 25.827 27.904 hybrid contribution 1.306 1.073 -0.888 1.909 sum -2.019 -8.954 24.939 26.574 Atomic orbital electron populations 1.22169 0.94677 1.03558 1.01604 1.21766 0.95258 0.81257 1.04020 1.48261 1.64151 1.15137 1.06026 1.18658 0.95287 0.91317 0.80543 1.21737 0.97821 1.31792 1.06406 0.92750 1.25888 1.02439 0.94514 0.96517 1.70067 1.37750 1.34330 1.14830 0.85357 0.78964 0.77939 0.78465 1.18926 1.19332 1.20988 1.21267 0.77371 0.86603 0.86535 1.90652 1.47686 1.20662 1.87914 1.21923 1.04536 0.94305 0.86689 1.60155 1.32270 1.37657 0.99850 1.19626 0.97748 0.88672 0.84200 1.21892 0.91901 1.01776 1.03610 1.22413 0.94835 0.97469 1.04978 1.22028 0.96732 1.02776 1.01015 1.27088 1.00061 0.95124 1.01180 1.66056 1.25021 1.05891 1.22703 1.20786 0.98376 0.99656 0.90591 1.20407 1.01797 0.87841 1.03575 1.27314 1.07881 0.98029 1.07754 1.83618 1.45642 1.12708 1.16109 0.94589 0.88352 0.92162 0.90966 0.87913 0.96139 0.99090 0.92478 0.89621 0.85781 0.84020 0.93136 0.89609 0.90149 0.88819 0.88121 0.92729 0.89745 0.94258 0.90812 0.88247 0.91716 0.78090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.93 10.24 71.98 0.74 -3.19 16 2 C 0.10 2.94 5.93 86.38 0.51 3.45 16 3 N -0.60 -25.87 2.46 -826.15 -2.03 -27.90 16 4 C 0.26 14.63 5.16 85.63 0.44 15.07 16 5 C -0.54 -31.61 9.39 25.60 0.24 -31.37 16 6 H 0.05 3.13 7.81 -2.91 -0.02 3.11 16 7 C 0.01 0.30 5.46 84.65 0.46 0.76 16 8 N -0.93 -57.56 13.29 21.45 0.28 -57.28 16 9 Si 0.97 45.62 29.54 68.60 2.03 47.65 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 11 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 12 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 13 C 0.49 21.12 7.71 87.66 0.68 21.80 16 14 O -0.59 -32.29 15.78 -3.03 -0.05 -32.34 16 15 C 0.06 1.62 3.72 85.56 0.32 1.93 16 16 N -0.67 -20.12 5.51 -477.86 -2.63 -22.75 16 17 C 0.19 4.19 0.69 2.78 0.00 4.19 16 18 C -0.13 -2.48 8.22 71.98 0.59 -1.89 16 19 C -0.16 -2.46 4.00 30.60 0.12 -2.34 16 20 C -0.17 -3.09 8.89 71.98 0.64 -2.45 16 21 C 0.04 1.06 5.52 88.52 0.49 1.55 16 22 N -0.48 -13.95 10.53 -179.40 -1.89 -15.84 16 23 C 0.04 0.88 6.74 41.52 0.28 1.16 16 24 C -0.08 -1.43 10.31 71.23 0.73 -0.69 16 25 C -0.27 -4.90 11.13 66.77 0.74 -4.16 16 26 S 0.16 2.84 19.45 -56.49 -1.10 1.74 16 27 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.06 1.36 7.22 -2.38 -0.02 1.35 16 30 H 0.07 2.29 8.07 -2.38 -0.02 2.27 16 31 H 0.10 2.21 6.44 -2.39 -0.02 2.20 16 32 H 0.02 1.16 8.07 -2.39 -0.02 1.14 16 33 H -0.01 -0.59 7.42 -2.39 -0.02 -0.61 16 34 H 0.27 15.41 8.31 -92.71 -0.77 14.63 16 35 H 0.09 1.93 5.39 -2.39 -0.01 1.92 16 36 H 0.12 2.88 5.35 -2.39 -0.01 2.87 16 37 H 0.34 11.77 6.74 -89.69 -0.60 11.17 16 38 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 39 H 0.09 1.26 6.40 -2.39 -0.02 1.24 16 40 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.09 1.11 7.38 -2.39 -0.02 1.09 16 42 H 0.10 1.27 6.76 -2.39 -0.02 1.26 16 43 H 0.05 1.07 5.57 -2.39 -0.01 1.05 16 44 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.04 0.91 6.54 -2.38 -0.02 0.89 16 46 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 47 H 0.10 1.20 8.12 -2.39 -0.02 1.18 16 48 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 49 H 0.20 2.27 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -82.11 397.63 1.95 -80.16 By element: Atomic # 1 Polarization: 22.38 SS G_CDS: 0.35 Total: 22.73 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: 6.99 Total: 3.83 kcal Atomic # 7 Polarization: -117.50 SS G_CDS: -6.27 Total: -123.77 kcal Atomic # 8 Polarization: -32.29 SS G_CDS: -0.05 Total: -32.34 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Atomic # 16 Polarization: 2.84 SS G_CDS: -1.10 Total: 1.74 kcal Total: -82.11 1.95 -80.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173940727.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.227 kcal (2) G-P(sol) polarization free energy of solvation -82.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds