Wall clock time and date at job start Tue Mar 31 2020 22:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50706 * 109.46925 * 2 1 4 4 C 1.33636 * 122.74633 * 124.73779 * 3 2 1 5 5 S 1.76201 * 107.92309 * 179.97438 * 4 3 2 6 6 C 1.70973 * 90.28082 * 0.27020 * 5 4 3 7 7 C 1.50705 * 124.91435 * 179.83684 * 6 5 4 8 8 C 1.50693 * 109.47261 * 270.00211 * 7 6 5 9 9 O 1.21280 * 120.00204 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00032 * 179.97438 * 8 7 6 11 11 C 1.46502 * 119.99847 * 0.02562 * 10 8 7 12 12 C 1.50702 * 109.46952 * 89.99819 * 11 10 8 13 13 H 1.07997 * 120.00367 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99783 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99867 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99881 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47184 * 59.99518 * 16 14 12 18 18 H 1.48499 * 109.46641 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46681 * 299.99833 * 16 14 12 20 20 C 1.46504 * 120.00421 * 180.02562 * 10 8 7 21 21 C 1.53002 * 109.47244 * 90.00004 * 20 10 8 22 22 C 1.52998 * 109.47086 * 180.02562 * 21 20 10 23 23 N 1.46896 * 109.46880 * 179.97438 * 22 21 20 24 24 C 1.46899 * 110.99958 * 66.04781 * 23 22 21 25 25 C 1.46897 * 110.99882 * 190.00262 * 23 22 21 26 26 N 1.29021 * 110.16973 * 359.84427 * 6 5 4 27 27 H 1.09004 * 109.46930 * 299.99901 * 1 2 3 28 28 H 1.09004 * 109.47059 * 59.99503 * 1 2 3 29 29 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46497 * 240.00263 * 2 1 3 31 31 H 1.09000 * 109.47312 * 120.00043 * 2 1 3 32 32 H 1.08004 * 126.03886 * 0.02896 * 4 3 2 33 33 H 1.08998 * 109.47135 * 30.00603 * 7 6 5 34 34 H 1.09005 * 109.46463 * 150.00141 * 7 6 5 35 35 H 1.08996 * 109.46974 * 209.99764 * 11 10 8 36 36 H 1.08999 * 109.47295 * 329.99649 * 11 10 8 37 37 H 0.96998 * 120.00119 * 179.97438 * 15 14 12 38 38 H 1.08998 * 109.47536 * 210.00475 * 20 10 8 39 39 H 1.09000 * 109.46937 * 330.00024 * 20 10 8 40 40 H 1.09000 * 109.46760 * 300.00454 * 21 20 10 41 41 H 1.08997 * 109.46410 * 60.00161 * 21 20 10 42 42 H 1.08992 * 109.47150 * 300.00253 * 22 21 20 43 43 H 1.09002 * 109.46715 * 60.00718 * 22 21 20 44 44 H 1.09002 * 109.46947 * 59.99712 * 24 23 22 45 45 H 1.09001 * 109.47153 * 179.97438 * 24 23 22 46 46 H 1.08994 * 109.47315 * 300.00326 * 24 23 22 47 47 H 1.08999 * 109.47435 * 60.00441 * 25 23 22 48 48 H 1.09001 * 109.47078 * 180.02562 * 25 23 22 49 49 H 1.09004 * 109.47135 * 299.99812 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.8771 1.8890 0.9237 5 16 3.2032 3.5803 0.5528 6 6 2.1650 3.4920 -0.8027 7 6 1.8709 4.6350 -1.7399 8 6 0.6754 5.4023 -1.2368 9 8 0.1174 5.0555 -0.2174 10 7 0.2270 6.4745 -1.9192 11 6 0.9014 6.8938 -3.1503 12 6 0.2735 6.1963 -4.3295 13 1 -0.5462 5.5098 -4.1772 14 6 0.7455 6.4347 -5.6029 15 7 1.7433 7.2711 -5.7884 16 14 -0.0332 5.5708 -7.0646 17 1 -1.4722 5.9291 -7.1424 18 1 0.6513 5.9948 -8.3124 19 1 0.1027 4.1011 -6.9009 20 6 -0.9349 7.2208 -1.4299 21 6 -0.4672 8.3346 -0.4909 22 6 -1.6806 9.1135 0.0206 23 7 -1.2316 10.1825 0.9225 24 6 -0.4499 11.1913 0.1951 25 6 -2.3702 10.7985 1.6166 26 7 1.6696 2.3053 -0.9071 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8932 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.2881 1.3291 1.7508 33 1 2.7348 5.2980 -1.7866 34 1 1.6590 4.2436 -2.7349 35 1 0.8008 7.9724 -3.2704 36 1 1.9578 6.6315 -3.0933 37 1 2.0757 7.4386 -6.6842 38 1 -1.4683 7.6574 -2.2742 39 1 -1.5993 6.5458 -0.8903 40 1 0.0661 7.8978 0.3534 41 1 0.1972 9.0094 -1.0305 42 1 -2.2143 9.5501 -0.8235 43 1 -2.3446 8.4383 0.5603 44 1 -1.0655 11.6315 -0.5894 45 1 -0.1304 11.9712 0.8863 46 1 0.4255 10.7201 -0.2515 47 1 -2.8907 10.0418 2.2036 48 1 -2.0096 11.5868 2.2775 49 1 -3.0553 11.2246 0.8836 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283160451.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:47 Heat of formation + Delta-G solvation = -18.445348 kcal Electronic energy + Delta-G solvation = -27389.867529 eV Core-core repulsion = 23670.743859 eV Total energy + Delta-G solvation = -3719.123670 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.23721 -40.47645 -38.65348 -36.88300 -35.01656 -34.67144 -33.26611 -31.96382 -29.59016 -29.23534 -28.48422 -27.14806 -25.52531 -24.91044 -24.09315 -22.96122 -21.78872 -20.65953 -20.05211 -18.64210 -18.45466 -18.04569 -17.33063 -16.57846 -16.44080 -16.32078 -16.25315 -15.97950 -15.64584 -15.45542 -15.05553 -14.78618 -14.69164 -14.36159 -14.14913 -14.02408 -13.58186 -13.41349 -13.31330 -13.20877 -13.15512 -12.92261 -12.73531 -12.69264 -12.63499 -12.58615 -12.40092 -12.32832 -12.14120 -12.05420 -11.80003 -11.72302 -11.49484 -10.91908 -10.59208 -10.55716 -10.29191 -9.61586 -9.50171 -9.32309 -8.20736 -6.34450 -0.24883 0.45155 0.82589 1.41950 1.43658 1.50329 1.68337 1.79634 2.26725 2.43970 3.02180 3.09970 3.12695 3.69731 3.86081 3.95195 4.10610 4.13753 4.21738 4.24393 4.34268 4.39379 4.40242 4.45643 4.50902 4.61032 4.63561 4.65299 4.67274 4.70726 4.75126 4.79782 4.91381 4.99076 4.99804 5.01984 5.14226 5.17518 5.19218 5.25505 5.28602 5.42515 5.65098 5.82182 6.03885 6.05640 6.11398 6.51690 6.78816 6.86484 7.24513 7.39219 8.84418 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.006382 B = 0.004143 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4386.524311 B = 6756.989626 C = 9879.055289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.043 4.043 3 C 0.047 3.953 4 C -0.257 4.257 5 S 0.146 5.854 6 C 0.057 3.943 7 C -0.060 4.060 8 C 0.523 3.477 9 O -0.583 6.583 10 N -0.594 5.594 11 C 0.252 3.748 12 C -0.549 4.549 13 H 0.049 0.951 14 C 0.028 3.972 15 N -0.915 5.915 16 Si 0.949 3.051 17 H -0.273 1.273 18 H -0.280 1.280 19 H -0.275 1.275 20 C 0.123 3.877 21 C -0.112 4.112 22 C 0.065 3.935 23 N -0.565 5.565 24 C 0.021 3.979 25 C 0.025 3.975 26 N -0.493 5.493 27 H 0.043 0.957 28 H 0.034 0.966 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.109 0.891 32 H 0.211 0.789 33 H 0.125 0.875 34 H 0.115 0.885 35 H 0.027 0.973 36 H 0.035 0.965 37 H 0.268 0.732 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.054 0.946 41 H 0.061 0.939 42 H 0.040 0.960 43 H 0.077 0.923 44 H 0.028 0.972 45 H 0.081 0.919 46 H 0.061 0.939 47 H 0.070 0.930 48 H 0.080 0.920 49 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.395 -2.716 13.549 13.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.083 4.083 3 C -0.085 4.085 4 C -0.396 4.396 5 S 0.402 5.598 6 C -0.221 4.221 7 C -0.103 4.103 8 C 0.310 3.690 9 O -0.465 6.465 10 N -0.323 5.323 11 C 0.131 3.869 12 C -0.587 4.587 13 H 0.067 0.933 14 C -0.173 4.173 15 N -0.554 5.554 16 Si 0.775 3.225 17 H -0.199 1.199 18 H -0.205 1.205 19 H -0.201 1.201 20 C -0.001 4.001 21 C -0.151 4.151 22 C -0.063 4.063 23 N -0.289 5.289 24 C -0.127 4.127 25 C -0.123 4.123 26 N -0.209 5.209 27 H 0.062 0.938 28 H 0.053 0.947 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.128 0.872 32 H 0.228 0.772 33 H 0.143 0.857 34 H 0.133 0.867 35 H 0.045 0.955 36 H 0.053 0.947 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.058 0.942 43 H 0.095 0.905 44 H 0.046 0.954 45 H 0.100 0.900 46 H 0.080 0.920 47 H 0.089 0.911 48 H 0.098 0.902 49 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 0.791 -2.284 14.282 14.485 hybrid contribution -1.210 -0.565 -1.941 2.356 sum -0.419 -2.849 12.341 12.673 Atomic orbital electron populations 1.21632 0.95000 1.02309 1.00939 1.20238 0.96053 0.87561 1.04402 1.20777 0.97744 0.98444 0.91570 1.27222 1.07792 0.97191 1.07347 1.83604 1.43002 1.10048 1.23177 1.26239 0.99773 0.95767 1.00315 1.20183 0.98492 0.92893 0.98687 1.20284 0.85292 0.80246 0.83137 1.90604 1.60500 1.69032 1.26395 1.48138 1.30804 1.27909 1.25491 1.19145 0.92616 0.95456 0.79663 1.21623 1.18196 1.26660 0.92249 0.93277 1.25535 0.95206 0.95509 1.01014 1.69974 1.26366 1.35620 1.23421 0.85739 0.78802 0.79034 0.78918 1.19850 1.20464 1.20080 1.21302 0.87759 0.93423 0.97597 1.21738 0.98441 0.96589 0.98315 1.21953 0.95999 0.93500 0.94851 1.61960 1.24050 1.12439 1.30422 1.22450 0.97899 0.94760 0.97544 1.22423 0.91808 0.99792 0.98261 1.65990 1.24627 1.01492 1.28784 0.93774 0.94721 0.89898 0.89944 0.87249 0.77191 0.85671 0.86735 0.95513 0.94726 0.92245 0.90512 0.91555 0.92753 0.92069 0.94198 0.90484 0.95388 0.90044 0.92003 0.91082 0.90168 0.95259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 9.81 71.98 0.71 -2.67 16 2 C -0.04 -0.94 6.43 29.85 0.19 -0.75 16 3 C 0.05 1.37 6.08 41.52 0.25 1.62 16 4 C -0.26 -6.36 11.07 66.78 0.74 -5.62 16 5 S 0.15 4.17 23.18 -56.49 -1.31 2.86 16 6 C 0.06 2.07 5.88 88.52 0.52 2.59 16 7 C -0.06 -2.30 4.83 29.10 0.14 -2.16 16 8 C 0.52 22.29 7.67 87.66 0.67 22.96 16 9 O -0.58 -27.00 15.61 -3.03 -0.05 -27.04 16 10 N -0.59 -24.95 2.46 -826.15 -2.03 -26.98 16 11 C 0.25 11.69 4.97 85.63 0.43 12.11 16 12 C -0.55 -28.22 9.28 25.60 0.24 -27.98 16 13 H 0.05 2.61 7.81 -2.91 -0.02 2.59 16 14 C 0.03 1.47 5.46 84.66 0.46 1.93 16 15 N -0.91 -49.22 13.29 21.45 0.28 -48.93 16 16 Si 0.95 41.82 29.54 68.60 2.03 43.85 16 17 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 18 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 19 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 20 C 0.12 4.53 5.41 86.38 0.47 5.00 16 21 C -0.11 -3.59 5.46 30.59 0.17 -3.43 16 22 C 0.07 1.76 4.96 86.30 0.43 2.18 16 23 N -0.56 -14.01 5.02 -948.88 -4.76 -18.77 16 24 C 0.02 0.48 9.32 127.69 1.19 1.67 16 25 C 0.02 0.48 9.57 127.69 1.22 1.70 16 26 N -0.49 -18.37 10.34 -179.40 -1.86 -20.22 16 27 H 0.04 1.11 8.14 -2.38 -0.02 1.09 16 28 H 0.03 1.03 8.08 -2.39 -0.02 1.01 16 29 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.11 1.63 8.03 -2.39 -0.02 1.61 16 32 H 0.21 3.37 8.06 -2.91 -0.02 3.34 16 33 H 0.13 4.29 7.40 -2.39 -0.02 4.28 16 34 H 0.11 4.82 8.00 -2.38 -0.02 4.80 16 35 H 0.03 1.30 8.07 -2.39 -0.02 1.28 16 36 H 0.03 1.63 6.44 -2.39 -0.02 1.62 16 37 H 0.27 13.77 8.31 -92.71 -0.77 13.00 16 38 H 0.08 2.81 8.07 -2.39 -0.02 2.79 16 39 H 0.07 2.52 7.42 -2.39 -0.02 2.50 16 40 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.06 2.00 6.55 -2.39 -0.02 1.99 16 42 H 0.04 1.03 8.12 -2.39 -0.02 1.01 16 43 H 0.08 2.01 8.06 -2.39 -0.02 1.99 16 44 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 45 H 0.08 1.53 8.12 -2.39 -0.02 1.51 16 46 H 0.06 1.53 6.47 -2.39 -0.02 1.52 16 47 H 0.07 1.29 8.12 -2.39 -0.02 1.27 16 48 H 0.08 1.29 8.12 -2.39 -0.02 1.27 16 49 H 0.03 0.53 8.14 -2.38 -0.02 0.51 16 Total: -1.00 -64.30 415.07 1.04 -63.26 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: 0.91 Total: 22.82 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: 7.82 Total: 9.16 kcal Atomic # 7 Polarization: -106.54 SS G_CDS: -8.36 Total: -114.90 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: -0.05 Total: -27.04 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Atomic # 16 Polarization: 4.17 SS G_CDS: -1.31 Total: 2.86 kcal Total: -64.30 1.04 -63.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283160451.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.811 kcal (2) G-P(sol) polarization free energy of solvation -64.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds