Wall clock time and date at job start Tue Mar 31 2020 22:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31784 * 122.74936 * 2 1 4 4 C 1.29025 * 117.12258 * 179.72958 * 3 2 1 5 5 S 1.70968 * 110.17021 * 359.97438 * 4 3 2 6 6 C 1.33641 * 122.75115 * 179.70289 * 2 1 3 7 7 C 1.50700 * 126.03597 * 0.25055 * 6 2 1 8 8 C 1.53007 * 109.47143 * 90.00096 * 7 6 2 9 9 C 1.50700 * 109.47143 * 179.97438 * 8 7 6 10 10 O 1.21286 * 119.99805 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99741 * 180.02562 * 9 8 7 12 12 C 1.46498 * 120.00221 * 359.97438 * 11 9 8 13 13 C 1.50691 * 109.47109 * 90.00065 * 12 11 9 14 14 H 1.07992 * 120.00573 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99859 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00225 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99929 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47336 * 60.00183 * 17 15 13 19 19 H 1.48504 * 109.46878 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.46929 * 300.00059 * 17 15 13 21 21 C 1.46496 * 119.99485 * 179.97438 * 11 9 8 22 22 C 1.53005 * 109.47111 * 89.99947 * 21 11 9 23 23 C 1.53002 * 109.46906 * 179.97438 * 22 21 11 24 24 N 1.46905 * 109.46938 * 180.02562 * 23 22 21 25 25 C 1.46896 * 111.00185 * 66.04289 * 24 23 22 26 26 C 1.46893 * 111.00065 * 189.99963 * 24 23 22 27 27 H 1.08994 * 109.47218 * 90.03005 * 1 2 3 28 28 H 1.09007 * 109.46702 * 210.02827 * 1 2 3 29 29 H 1.08999 * 109.46968 * 330.02330 * 1 2 3 30 30 H 1.08008 * 124.91196 * 179.97438 * 4 3 2 31 31 H 1.09000 * 109.46916 * 209.99905 * 7 6 2 32 32 H 1.08999 * 109.47044 * 329.99869 * 7 6 2 33 33 H 1.08997 * 109.46409 * 300.00065 * 8 7 6 34 34 H 1.08999 * 109.46626 * 59.99718 * 8 7 6 35 35 H 1.09001 * 109.47036 * 210.00363 * 12 11 9 36 36 H 1.09000 * 109.46770 * 330.00179 * 12 11 9 37 37 H 0.96998 * 119.99960 * 179.97438 * 16 15 13 38 38 H 1.09000 * 109.47039 * 209.99324 * 21 11 9 39 39 H 1.08992 * 109.47951 * 329.99808 * 21 11 9 40 40 H 1.08990 * 109.47142 * 299.99469 * 22 21 11 41 41 H 1.08998 * 109.47006 * 59.99867 * 22 21 11 42 42 H 1.09000 * 109.47453 * 299.99505 * 23 22 21 43 43 H 1.08998 * 109.47084 * 60.00297 * 23 22 21 44 44 H 1.09004 * 109.46648 * 60.00336 * 25 24 23 45 45 H 1.09001 * 109.47495 * 179.97438 * 25 24 23 46 46 H 1.08995 * 109.47368 * 300.00333 * 25 24 23 47 47 H 1.09008 * 109.46994 * 59.99651 * 26 24 23 48 48 H 1.08996 * 109.47408 * 179.97438 * 26 24 23 49 49 H 1.08997 * 109.47687 * 299.99846 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5039 0.9819 0.0054 5 16 3.9332 -0.6730 0.0121 6 6 2.2300 -1.1239 0.0058 7 6 1.6847 -2.5288 0.0078 8 6 1.5055 -3.0084 -1.4341 9 6 0.9608 -4.4135 -1.4321 10 8 0.7384 -4.9762 -0.3810 11 7 0.7219 -5.0452 -2.5985 12 6 0.9912 -4.3657 -3.8681 13 6 2.4084 -4.6458 -4.2970 14 1 3.0450 -5.2673 -3.6849 15 6 2.8923 -4.1084 -5.4710 16 7 2.1172 -3.3511 -6.2162 17 14 4.6489 -4.4561 -6.0030 18 1 4.8334 -5.9194 -6.1754 19 1 4.9218 -3.7672 -7.2900 20 1 5.5879 -3.9575 -4.9663 21 6 0.1930 -6.4113 -2.5965 22 6 -1.3364 -6.3661 -2.6023 23 6 -1.8888 -7.7929 -2.6009 24 7 -3.3572 -7.7495 -2.6072 25 6 -3.8617 -7.1806 -3.8640 26 6 -3.9243 -9.0832 -2.3679 27 1 -0.3633 -0.0005 -1.0276 28 1 -0.3633 -0.8898 0.5143 29 1 -0.3633 0.8902 0.5135 30 1 4.2059 1.8027 0.0057 31 1 2.3811 -3.1881 0.5260 32 1 0.7217 -2.5441 0.5181 33 1 0.8092 -2.3490 -1.9522 34 1 2.4686 -2.9931 -1.9444 35 1 0.3021 -4.7317 -4.6293 36 1 0.8554 -3.2917 -3.7413 37 1 2.4578 -2.9728 -7.0419 38 1 0.5442 -6.9382 -3.4837 39 1 0.5375 -6.9332 -1.7038 40 1 -1.6877 -5.8393 -1.7152 41 1 -1.6810 -5.8443 -3.4951 42 1 -1.5376 -8.3194 -3.4883 43 1 -1.5442 -8.3150 -1.7084 44 1 -3.5267 -7.7937 -4.7006 45 1 -4.9514 -7.1605 -3.8422 46 1 -3.4816 -6.1659 -3.9820 47 1 -3.5896 -9.4518 -1.3982 48 1 -5.0126 -9.0223 -2.3772 49 1 -3.5916 -9.7653 -3.1503 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298221930.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:08 Heat of formation + Delta-G solvation = -4.424487 kcal Electronic energy + Delta-G solvation = -27400.558403 eV Core-core repulsion = 23682.042723 eV Total energy + Delta-G solvation = -3718.515680 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.85232 -39.16818 -37.59813 -35.28524 -34.09952 -32.90857 -31.63214 -30.65993 -27.77529 -27.57902 -27.34773 -25.84674 -24.76635 -23.34999 -23.01727 -21.87798 -20.61892 -18.69911 -18.25437 -17.99200 -16.70512 -16.35920 -15.75882 -15.58644 -15.34709 -15.06115 -14.82542 -14.63449 -14.47818 -14.30720 -13.80385 -13.50214 -13.22062 -12.89417 -12.51348 -12.46048 -12.41636 -12.25025 -12.16922 -12.10256 -11.82299 -11.76388 -11.56853 -11.52640 -11.27725 -11.16261 -11.10978 -10.96895 -10.76726 -10.52435 -10.30624 -10.08488 -9.79396 -9.55697 -9.23777 -8.98289 -8.59650 -8.55170 -8.35244 -7.75149 -6.22128 -4.29937 0.82614 1.48646 1.87576 2.88589 3.21042 3.26570 3.27914 3.39187 3.79775 4.09671 4.29609 4.32274 4.96609 5.08039 5.10899 5.14655 5.16872 5.22017 5.27592 5.37254 5.44642 5.49708 5.54043 5.58319 5.65706 5.69922 5.71632 5.77419 5.83754 5.86959 5.91056 5.94190 6.00474 6.03625 6.15776 6.28689 6.41246 6.47369 6.50413 6.62303 6.75958 7.03115 7.06083 7.14556 7.50746 7.72427 7.81062 8.01659 8.31041 8.74918 8.98968 9.38419 10.84418 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007785 B = 0.003596 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3595.768682 B = 7784.106524 C =10353.797297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.052 3.948 3 N -0.467 5.467 4 C 0.007 3.993 5 S 0.120 5.880 6 C -0.202 4.202 7 C -0.026 4.026 8 C -0.129 4.129 9 C 0.518 3.482 10 O -0.576 6.576 11 N -0.593 5.593 12 C 0.238 3.762 13 C -0.540 4.540 14 H 0.060 0.940 15 C 0.067 3.933 16 N -0.890 5.890 17 Si 0.894 3.106 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.122 3.878 22 C -0.128 4.128 23 C 0.059 3.941 24 N -0.549 5.549 25 C 0.021 3.979 26 C 0.025 3.975 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.196 0.804 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.104 0.896 35 H 0.035 0.965 36 H 0.038 0.962 37 H 0.266 0.734 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.034 0.966 43 H 0.074 0.926 44 H 0.025 0.975 45 H 0.063 0.937 46 H 0.074 0.926 47 H 0.067 0.933 48 H 0.065 0.935 49 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.479 -0.035 8.535 9.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.079 4.079 3 N -0.181 5.181 4 C -0.290 4.290 5 S 0.374 5.626 6 C -0.323 4.323 7 C -0.066 4.066 8 C -0.169 4.169 9 C 0.307 3.693 10 O -0.458 6.458 11 N -0.323 5.323 12 C 0.118 3.882 13 C -0.578 4.578 14 H 0.078 0.922 15 C -0.137 4.137 16 N -0.528 5.528 17 Si 0.722 3.278 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.200 1.200 21 C -0.002 4.002 22 C -0.167 4.167 23 C -0.069 4.069 24 N -0.272 5.272 25 C -0.127 4.127 26 C -0.123 4.123 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.212 0.788 31 H 0.099 0.901 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.122 0.878 35 H 0.053 0.947 36 H 0.056 0.944 37 H 0.076 0.924 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.053 0.947 43 H 0.092 0.908 44 H 0.043 0.957 45 H 0.082 0.918 46 H 0.093 0.907 47 H 0.085 0.915 48 H 0.084 0.916 49 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -3.987 0.139 9.247 10.071 hybrid contribution 0.569 -0.498 -1.444 1.629 sum -3.419 -0.359 7.804 8.527 Atomic orbital electron populations 1.20368 0.87149 1.03063 1.03159 1.20199 0.98234 0.86152 1.03310 1.66153 1.05056 1.31730 1.15176 1.28172 0.95271 1.00082 1.05522 1.84093 1.07599 1.03313 1.67642 1.25814 0.94755 1.00990 1.10747 1.19830 1.01815 0.87677 0.97243 1.21602 1.04434 0.94272 0.96613 1.20385 0.77378 0.88169 0.83374 1.90595 1.55145 1.68555 1.31482 1.48183 1.61664 1.14552 1.07890 1.19423 0.96538 0.92985 0.79232 1.21446 0.97523 1.32006 1.06871 0.92159 1.24928 0.97897 0.94698 0.96129 1.69906 1.36206 1.32567 1.14136 0.86608 0.84576 0.78621 0.78016 1.20134 1.21113 1.19985 1.21187 0.92117 0.84476 1.02413 1.21936 0.95947 0.95909 1.02892 1.22081 0.86366 0.97736 1.00765 1.61972 1.07828 1.22618 1.34819 1.22439 1.00186 1.00587 0.89496 1.22363 1.00013 0.89212 1.00747 0.90481 0.90518 0.90974 0.78758 0.90102 0.89209 0.89050 0.87766 0.94729 0.94378 0.92438 0.90702 0.91028 0.91068 0.91765 0.94726 0.90776 0.95673 0.91769 0.90736 0.91457 0.91633 0.95856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.96 10.06 36.01 0.36 -0.60 16 2 C 0.05 0.77 6.74 -84.22 -0.57 0.20 16 3 N -0.47 -6.94 10.53 -11.90 -0.13 -7.07 16 4 C 0.01 0.09 12.23 51.58 0.63 0.72 16 5 S 0.12 1.56 23.22 -107.50 -2.50 -0.94 16 6 C -0.20 -2.96 5.84 -35.92 -0.21 -3.17 16 7 C -0.03 -0.39 4.72 -27.88 -0.13 -0.52 16 8 C -0.13 -2.26 4.23 -27.88 -0.12 -2.38 16 9 C 0.52 10.26 7.67 -10.99 -0.08 10.18 16 10 O -0.58 -12.21 15.56 5.55 0.09 -12.12 16 11 N -0.59 -11.97 2.46 -175.07 -0.43 -12.40 16 12 C 0.24 5.44 4.96 -5.20 -0.03 5.41 16 13 C -0.54 -13.62 9.28 -34.44 -0.32 -13.94 16 14 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 15 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 16 N -0.89 -24.07 13.29 55.43 0.74 -23.34 16 17 Si 0.89 20.21 29.54 -169.99 -5.02 15.19 16 18 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 19 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 21 C 0.12 2.18 5.41 -4.04 -0.02 2.15 16 22 C -0.13 -2.01 5.46 -26.73 -0.15 -2.15 16 23 C 0.06 0.79 4.96 -3.82 -0.02 0.77 16 24 N -0.55 -7.04 5.02 -251.26 -1.26 -8.30 16 25 C 0.02 0.25 9.32 60.06 0.56 0.81 16 26 C 0.03 0.26 9.57 60.06 0.57 0.83 16 27 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.08 0.87 6.71 -51.92 -0.35 0.52 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.20 1.71 8.06 -52.48 -0.42 1.29 16 31 H 0.08 1.25 8.10 -51.93 -0.42 0.83 16 32 H 0.09 1.31 6.71 -51.93 -0.35 0.96 16 33 H 0.09 1.57 7.40 -51.93 -0.38 1.19 16 34 H 0.10 2.00 8.00 -51.93 -0.42 1.58 16 35 H 0.03 0.83 8.07 -51.93 -0.42 0.42 16 36 H 0.04 0.90 6.44 -51.93 -0.33 0.57 16 37 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 38 H 0.07 1.33 8.07 -51.93 -0.42 0.92 16 39 H 0.07 1.29 7.42 -51.93 -0.39 0.90 16 40 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 41 H 0.06 1.04 6.55 -51.93 -0.34 0.70 16 42 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 43 H 0.07 0.96 8.06 -51.93 -0.42 0.55 16 44 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 45 H 0.06 0.65 8.12 -51.93 -0.42 0.23 16 46 H 0.07 0.94 6.47 -51.93 -0.34 0.60 16 47 H 0.07 0.65 8.12 -51.92 -0.42 0.23 16 48 H 0.06 0.59 8.12 -51.93 -0.42 0.17 16 49 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 LS Contribution 412.24 15.07 6.21 6.21 Total: -1.00 -29.37 412.24 -10.25 -39.62 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -8.34 Total: 3.19 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: 0.39 Total: -0.05 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: -1.08 Total: -51.10 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.09 Total: -12.12 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Atomic # 16 Polarization: 1.56 SS G_CDS: -2.50 Total: -0.94 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -29.37 -10.25 -39.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298221930.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.196 kcal (2) G-P(sol) polarization free energy of solvation -29.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds