Wall clock time and date at job start Tue Mar 31 2020 22:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31784 * 122.74936 * 2 1 4 4 C 1.29025 * 117.12258 * 179.72958 * 3 2 1 5 5 S 1.70968 * 110.17021 * 359.97438 * 4 3 2 6 6 C 1.33641 * 122.75115 * 179.70289 * 2 1 3 7 7 C 1.50700 * 126.03597 * 0.25055 * 6 2 1 8 8 C 1.53007 * 109.47143 * 90.00096 * 7 6 2 9 9 C 1.50700 * 109.47143 * 179.97438 * 8 7 6 10 10 O 1.21286 * 119.99805 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99741 * 180.02562 * 9 8 7 12 12 C 1.46498 * 120.00221 * 359.97438 * 11 9 8 13 13 C 1.50691 * 109.47109 * 90.00065 * 12 11 9 14 14 H 1.07992 * 120.00573 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99859 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00225 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99929 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47336 * 60.00183 * 17 15 13 19 19 H 1.48504 * 109.46878 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.46929 * 300.00059 * 17 15 13 21 21 C 1.46496 * 119.99485 * 179.97438 * 11 9 8 22 22 C 1.53005 * 109.47111 * 89.99947 * 21 11 9 23 23 C 1.53002 * 109.46906 * 179.97438 * 22 21 11 24 24 N 1.46905 * 109.46938 * 180.02562 * 23 22 21 25 25 C 1.46896 * 111.00185 * 66.04289 * 24 23 22 26 26 C 1.46893 * 111.00065 * 189.99963 * 24 23 22 27 27 H 1.08994 * 109.47218 * 90.03005 * 1 2 3 28 28 H 1.09007 * 109.46702 * 210.02827 * 1 2 3 29 29 H 1.08999 * 109.46968 * 330.02330 * 1 2 3 30 30 H 1.08008 * 124.91196 * 179.97438 * 4 3 2 31 31 H 1.09000 * 109.46916 * 209.99905 * 7 6 2 32 32 H 1.08999 * 109.47044 * 329.99869 * 7 6 2 33 33 H 1.08997 * 109.46409 * 300.00065 * 8 7 6 34 34 H 1.08999 * 109.46626 * 59.99718 * 8 7 6 35 35 H 1.09001 * 109.47036 * 210.00363 * 12 11 9 36 36 H 1.09000 * 109.46770 * 330.00179 * 12 11 9 37 37 H 0.96998 * 119.99960 * 179.97438 * 16 15 13 38 38 H 1.09000 * 109.47039 * 209.99324 * 21 11 9 39 39 H 1.08992 * 109.47951 * 329.99808 * 21 11 9 40 40 H 1.08990 * 109.47142 * 299.99469 * 22 21 11 41 41 H 1.08998 * 109.47006 * 59.99867 * 22 21 11 42 42 H 1.09000 * 109.47453 * 299.99505 * 23 22 21 43 43 H 1.08998 * 109.47084 * 60.00297 * 23 22 21 44 44 H 1.09004 * 109.46648 * 60.00336 * 25 24 23 45 45 H 1.09001 * 109.47495 * 179.97438 * 25 24 23 46 46 H 1.08995 * 109.47368 * 300.00333 * 25 24 23 47 47 H 1.09008 * 109.46994 * 59.99651 * 26 24 23 48 48 H 1.08996 * 109.47408 * 179.97438 * 26 24 23 49 49 H 1.08997 * 109.47687 * 299.99846 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5039 0.9819 0.0054 5 16 3.9332 -0.6730 0.0121 6 6 2.2300 -1.1239 0.0058 7 6 1.6847 -2.5288 0.0078 8 6 1.5055 -3.0084 -1.4341 9 6 0.9608 -4.4135 -1.4321 10 8 0.7384 -4.9762 -0.3810 11 7 0.7219 -5.0452 -2.5985 12 6 0.9912 -4.3657 -3.8681 13 6 2.4084 -4.6458 -4.2970 14 1 3.0450 -5.2673 -3.6849 15 6 2.8923 -4.1084 -5.4710 16 7 2.1172 -3.3511 -6.2162 17 14 4.6489 -4.4561 -6.0030 18 1 4.8334 -5.9194 -6.1754 19 1 4.9218 -3.7672 -7.2900 20 1 5.5879 -3.9575 -4.9663 21 6 0.1930 -6.4113 -2.5965 22 6 -1.3364 -6.3661 -2.6023 23 6 -1.8888 -7.7929 -2.6009 24 7 -3.3572 -7.7495 -2.6072 25 6 -3.8617 -7.1806 -3.8640 26 6 -3.9243 -9.0832 -2.3679 27 1 -0.3633 -0.0005 -1.0276 28 1 -0.3633 -0.8898 0.5143 29 1 -0.3633 0.8902 0.5135 30 1 4.2059 1.8027 0.0057 31 1 2.3811 -3.1881 0.5260 32 1 0.7217 -2.5441 0.5181 33 1 0.8092 -2.3490 -1.9522 34 1 2.4686 -2.9931 -1.9444 35 1 0.3021 -4.7317 -4.6293 36 1 0.8554 -3.2917 -3.7413 37 1 2.4578 -2.9728 -7.0419 38 1 0.5442 -6.9382 -3.4837 39 1 0.5375 -6.9332 -1.7038 40 1 -1.6877 -5.8393 -1.7152 41 1 -1.6810 -5.8443 -3.4951 42 1 -1.5376 -8.3194 -3.4883 43 1 -1.5442 -8.3150 -1.7084 44 1 -3.5267 -7.7937 -4.7006 45 1 -4.9514 -7.1605 -3.8422 46 1 -3.4816 -6.1659 -3.9820 47 1 -3.5896 -9.4518 -1.3982 48 1 -5.0126 -9.0223 -2.3772 49 1 -3.5916 -9.7653 -3.1503 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298221930.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:07 Heat of formation + Delta-G solvation = -20.931274 kcal Electronic energy + Delta-G solvation = -27401.274191 eV Core-core repulsion = 23682.042723 eV Total energy + Delta-G solvation = -3719.231468 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.07323 -40.61906 -38.66269 -36.89060 -35.42291 -34.70283 -33.06610 -31.80301 -29.23358 -28.89307 -28.48206 -27.08511 -25.85198 -24.94206 -24.45139 -23.14264 -21.77501 -19.88805 -19.77975 -19.07227 -18.60044 -17.91558 -17.24894 -16.76553 -16.49892 -16.41740 -16.16617 -15.97408 -15.68618 -15.55243 -14.99895 -14.73445 -14.43899 -14.42655 -14.01104 -13.61535 -13.51242 -13.49846 -13.34094 -13.29664 -13.23391 -13.12134 -12.90398 -12.72907 -12.62702 -12.56141 -12.43485 -12.35393 -12.30158 -12.03703 -11.80004 -11.70540 -11.48033 -10.81183 -10.61939 -10.54514 -10.16510 -9.63710 -9.46025 -9.32020 -8.20629 -6.35157 -0.23119 0.44968 0.83044 1.41882 1.42892 1.50112 1.76452 1.80916 2.28207 2.44445 3.04732 3.10099 3.34966 3.63702 3.93018 3.99695 4.08957 4.11322 4.19957 4.24736 4.32148 4.36426 4.42497 4.46977 4.52660 4.62407 4.63517 4.67721 4.74628 4.76708 4.76886 4.81082 4.90504 4.94114 5.00573 5.01748 5.08676 5.10580 5.16065 5.20427 5.29974 5.39315 5.65363 5.84812 6.04234 6.06072 6.11873 6.56928 6.75794 6.81042 7.29893 7.41390 8.84519 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007785 B = 0.003596 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3595.768682 B = 7784.106524 C =10353.797297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.047 3.953 3 N -0.495 5.495 4 C 0.021 3.979 5 S 0.129 5.871 6 C -0.228 4.228 7 C -0.012 4.012 8 C -0.120 4.120 9 C 0.515 3.485 10 O -0.589 6.589 11 N -0.598 5.598 12 C 0.255 3.745 13 C -0.546 4.546 14 H 0.053 0.947 15 C 0.025 3.975 16 N -0.919 5.919 17 Si 0.950 3.050 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.270 1.270 21 C 0.121 3.879 22 C -0.112 4.112 23 C 0.065 3.935 24 N -0.564 5.564 25 C 0.022 3.978 26 C 0.025 3.975 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.232 0.768 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.020 0.980 36 H 0.029 0.971 37 H 0.267 0.733 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.038 0.962 43 H 0.080 0.920 44 H 0.027 0.973 45 H 0.081 0.919 46 H 0.060 0.940 47 H 0.072 0.928 48 H 0.079 0.921 49 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.137 -0.131 8.907 9.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.084 4.084 3 N -0.209 5.209 4 C -0.277 4.277 5 S 0.383 5.617 6 C -0.349 4.349 7 C -0.052 4.052 8 C -0.160 4.160 9 C 0.305 3.695 10 O -0.471 6.471 11 N -0.327 5.327 12 C 0.134 3.866 13 C -0.585 4.585 14 H 0.071 0.929 15 C -0.176 4.176 16 N -0.558 5.558 17 Si 0.776 3.224 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.195 1.195 21 C -0.002 4.002 22 C -0.151 4.151 23 C -0.063 4.063 24 N -0.289 5.289 25 C -0.126 4.126 26 C -0.123 4.123 27 H 0.094 0.906 28 H 0.103 0.897 29 H 0.100 0.900 30 H 0.248 0.752 31 H 0.094 0.906 32 H 0.113 0.887 33 H 0.110 0.890 34 H 0.106 0.894 35 H 0.038 0.962 36 H 0.047 0.953 37 H 0.076 0.924 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.056 0.944 43 H 0.098 0.902 44 H 0.045 0.955 45 H 0.099 0.901 46 H 0.079 0.921 47 H 0.091 0.909 48 H 0.098 0.902 49 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -3.653 0.020 9.632 10.301 hybrid contribution 0.462 -0.449 -1.538 1.668 sum -3.191 -0.429 8.094 8.710 Atomic orbital electron populations 1.20434 0.86113 1.03956 1.03320 1.20542 0.99240 0.86190 1.02465 1.66230 1.06032 1.31858 1.16817 1.28849 0.95192 1.00774 1.02863 1.84035 1.06486 1.03745 1.67388 1.25749 0.95890 1.00551 1.12708 1.19636 1.02079 0.88136 0.95353 1.21516 1.03188 0.92995 0.98288 1.20732 0.76983 0.88858 0.82934 1.90580 1.55752 1.69096 1.31706 1.48193 1.61928 1.15388 1.07197 1.19045 0.95181 0.92501 0.79849 1.21635 0.98370 1.31631 1.06851 0.92880 1.25600 1.01271 0.94515 0.96192 1.69998 1.37758 1.33471 1.14528 0.85719 0.80480 0.78530 0.77688 1.19732 1.20780 1.19495 1.21293 0.93480 0.83261 1.02206 1.21740 0.94302 0.97429 1.01649 1.21966 0.87224 0.95891 1.01223 1.61960 1.07164 1.24349 1.35378 1.22443 1.01195 0.99749 0.89255 1.22424 1.00775 0.87902 1.01190 0.90593 0.89737 0.89994 0.75195 0.90566 0.88723 0.88963 0.89433 0.96217 0.95318 0.92369 0.90890 0.91076 0.92610 0.92547 0.94360 0.90192 0.95455 0.90054 0.92135 0.90936 0.90227 0.95296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.90 10.06 71.24 0.72 -1.18 16 2 C 0.05 1.34 6.74 41.52 0.28 1.62 16 3 N -0.50 -14.04 10.53 -191.55 -2.02 -16.06 16 4 C 0.02 0.47 12.23 130.65 1.60 2.07 16 5 S 0.13 3.22 23.22 -56.49 -1.31 1.90 16 6 C -0.23 -6.58 5.84 24.64 0.14 -6.43 16 7 C -0.01 -0.37 4.72 29.85 0.14 -0.22 16 8 C -0.12 -4.26 4.23 29.85 0.13 -4.14 16 9 C 0.52 20.66 7.67 87.66 0.67 21.33 16 10 O -0.59 -25.01 15.56 -3.05 -0.05 -25.05 16 11 N -0.60 -24.52 2.46 -826.18 -2.03 -26.55 16 12 C 0.26 11.90 4.96 85.63 0.43 12.33 16 13 C -0.55 -27.77 9.28 25.60 0.24 -27.53 16 14 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 15 C 0.02 1.28 5.46 84.66 0.46 1.75 16 16 N -0.92 -49.90 13.29 21.45 0.28 -49.61 16 17 Si 0.95 41.07 29.54 68.60 2.03 43.10 16 18 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 19 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 20 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 21 C 0.12 4.35 5.41 86.38 0.47 4.82 16 22 C -0.11 -3.55 5.46 30.60 0.17 -3.38 16 23 C 0.07 1.72 4.96 86.30 0.43 2.15 16 24 N -0.56 -13.82 5.02 -948.86 -4.76 -18.58 16 25 C 0.02 0.49 9.32 127.69 1.19 1.68 16 26 C 0.02 0.46 9.57 127.69 1.22 1.69 16 27 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.08 1.85 6.71 -2.38 -0.02 1.84 16 29 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.23 3.33 8.06 -2.91 -0.02 3.31 16 31 H 0.08 2.36 8.10 -2.39 -0.02 2.34 16 32 H 0.09 2.75 6.71 -2.39 -0.02 2.73 16 33 H 0.09 3.25 7.40 -2.39 -0.02 3.23 16 34 H 0.09 3.43 8.00 -2.39 -0.02 3.41 16 35 H 0.02 0.98 8.07 -2.39 -0.02 0.96 16 36 H 0.03 1.40 6.44 -2.39 -0.02 1.38 16 37 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 38 H 0.07 2.63 8.07 -2.39 -0.02 2.61 16 39 H 0.07 2.56 7.42 -2.39 -0.02 2.54 16 40 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.06 1.86 6.55 -2.39 -0.02 1.85 16 42 H 0.04 0.98 8.12 -2.39 -0.02 0.96 16 43 H 0.08 2.00 8.06 -2.39 -0.02 1.98 16 44 H 0.03 0.59 8.14 -2.39 -0.02 0.58 16 45 H 0.08 1.53 8.12 -2.39 -0.02 1.51 16 46 H 0.06 1.52 6.47 -2.39 -0.02 1.50 16 47 H 0.07 1.27 8.12 -2.38 -0.02 1.25 16 48 H 0.08 1.26 8.12 -2.39 -0.02 1.24 16 49 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 Total: -1.00 -61.49 412.24 1.34 -60.15 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: 0.92 Total: 24.17 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: 8.28 Total: 6.54 kcal Atomic # 7 Polarization: -102.28 SS G_CDS: -8.52 Total: -110.80 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -0.05 Total: -25.05 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.10 kcal Atomic # 16 Polarization: 3.22 SS G_CDS: -1.31 Total: 1.90 kcal Total: -61.49 1.34 -60.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298221930.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.217 kcal (2) G-P(sol) polarization free energy of solvation -61.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds