Wall clock time and date at job start Tue Mar 31 2020 23:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47308 * 2 1 4 4 N 1.46494 * 109.47607 * 180.02562 * 3 2 1 5 5 C 1.36930 * 120.00323 * 89.99470 * 4 3 2 6 6 H 1.08004 * 119.99612 * 33.92660 * 5 4 3 7 7 C 1.38808 * 120.00431 * 214.19786 * 5 4 3 8 8 N 1.31623 * 120.00502 * 213.90926 * 7 5 4 9 9 Si 1.86802 * 119.99893 * 33.90637 * 7 5 4 10 10 H 1.48500 * 109.47077 * 93.55644 * 9 7 5 11 11 H 1.48500 * 109.46930 * 213.55521 * 9 7 5 12 12 H 1.48496 * 109.46884 * 333.55675 * 9 7 5 13 13 C 1.46503 * 119.99686 * 269.99774 * 4 3 2 14 14 C 1.52994 * 109.47357 * 274.64543 * 13 4 3 15 15 H 1.08997 * 109.47376 * 305.52843 * 14 13 4 16 16 O 1.42906 * 109.46938 * 65.52346 * 14 13 4 17 17 C 1.52995 * 109.47293 * 185.52314 * 14 13 4 18 18 O 1.42906 * 109.47344 * 173.85424 * 17 14 13 19 19 C 1.36096 * 116.99982 * 179.97438 * 18 17 14 20 20 C 1.38976 * 120.08996 * 269.72204 * 19 18 17 21 21 O 1.35998 * 120.04599 * 0.02562 * 20 19 18 22 22 C 1.42891 * 117.00179 * 179.97438 * 21 20 19 23 23 C 1.38667 * 119.90894 * 179.72403 * 20 19 18 24 24 C 1.38236 * 120.08784 * 0.55525 * 23 20 19 25 25 C 1.38224 * 120.17782 * 359.72218 * 24 23 20 26 26 C 1.38668 * 120.09048 * 0.02562 * 25 24 23 27 27 O 1.36003 * 120.04365 * 180.02562 * 26 25 24 28 28 C 1.42902 * 116.99882 * 359.97438 * 27 26 25 29 29 H 1.09000 * 109.47045 * 299.99965 * 1 2 3 30 30 H 1.09003 * 109.46688 * 60.00228 * 1 2 3 31 31 H 1.09004 * 109.46928 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47489 * 239.99823 * 2 1 3 33 33 H 1.09004 * 109.47440 * 119.99229 * 2 1 3 34 34 H 1.08997 * 109.46990 * 59.99517 * 3 2 1 35 35 H 1.09000 * 109.46949 * 300.00057 * 3 2 1 36 36 H 0.96999 * 120.00675 * 179.97438 * 8 7 5 37 37 H 1.09003 * 109.46975 * 34.65291 * 13 4 3 38 38 H 1.09004 * 109.47150 * 154.64928 * 13 4 3 39 39 H 0.96703 * 113.99838 * 59.99982 * 16 14 13 40 40 H 1.09002 * 109.47245 * 293.85200 * 17 14 13 41 41 H 1.08999 * 109.47237 * 53.85207 * 17 14 13 42 42 H 1.08997 * 109.47124 * 299.99538 * 22 21 20 43 43 H 1.08997 * 109.47350 * 59.99510 * 22 21 20 44 44 H 1.08998 * 109.47286 * 179.97438 * 22 21 20 45 45 H 1.07994 * 119.95562 * 180.29877 * 23 20 19 46 46 H 1.07998 * 119.90892 * 179.74119 * 24 23 20 47 47 H 1.07997 * 119.95510 * 179.97438 * 25 24 23 48 48 H 1.08997 * 109.46884 * 300.00039 * 28 27 26 49 49 H 1.08998 * 109.47300 * 59.99658 * 28 27 26 50 50 H 1.09003 * 109.47084 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1892 1.4427 -1.1867 6 1 3.7867 1.9648 -2.0422 7 6 5.3973 0.7671 -1.2912 8 7 6.3501 1.2387 -2.0672 9 14 5.6709 -0.8113 -0.3304 10 1 5.3168 -1.9761 -1.1807 11 1 7.0978 -0.9061 0.0698 12 1 4.8156 -0.8063 0.8835 13 6 4.2380 1.4425 1.2679 14 6 4.3919 2.8801 1.7681 15 1 4.8546 3.4878 0.9905 16 8 3.1052 3.4138 2.0872 17 6 5.2739 2.8935 3.0182 18 8 5.5355 4.2449 3.4022 19 6 6.3111 4.4349 4.5043 20 6 5.7249 4.5313 5.7607 21 8 4.3746 4.4354 5.8913 22 6 3.8413 4.5430 7.2125 23 6 6.5192 4.7192 6.8817 24 6 7.8914 4.8221 6.7494 25 6 8.4777 4.7325 5.5009 26 6 7.6909 4.5394 4.3755 27 8 8.2689 4.4509 3.1476 28 6 9.6922 4.5660 3.0907 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8901 34 1 1.6767 1.9564 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 7.1945 0.7668 -2.1400 37 1 3.6878 0.8580 2.0053 38 1 5.2239 1.0026 1.1178 39 1 2.6345 2.9216 2.7737 40 1 4.7611 2.3778 3.8302 41 1 6.2155 2.3879 2.8040 42 1 4.2529 3.7495 7.8362 43 1 4.1083 5.5120 7.6343 44 1 2.7560 4.4501 7.1750 45 1 6.0649 4.7894 7.8589 46 1 8.5069 4.9726 7.6240 47 1 9.5501 4.8138 5.4017 48 1 9.9943 5.5352 3.4875 49 1 10.1450 3.7728 3.6855 50 1 10.0227 4.4785 2.0557 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299404662.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:06 Heat of formation + Delta-G solvation = -107.484195 kcal Electronic energy + Delta-G solvation = -30949.409340 eV Core-core repulsion = 26751.379034 eV Total energy + Delta-G solvation = -4198.030307 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.77306 -39.05855 -38.18861 -36.95741 -36.29957 -35.13622 -32.85419 -31.29703 -30.56842 -29.71969 -29.19101 -27.93277 -26.78251 -25.83811 -25.31432 -22.54964 -21.99560 -21.98321 -21.27078 -19.86672 -18.88429 -17.51627 -17.11859 -16.81305 -16.55490 -16.19170 -15.62869 -15.53365 -15.47468 -15.05486 -14.92153 -14.86125 -14.30956 -14.15392 -13.82698 -13.63794 -13.23259 -12.89827 -12.78682 -12.48963 -12.43052 -12.34834 -12.30945 -12.04285 -11.67515 -11.62678 -11.46277 -11.16480 -11.09702 -10.86695 -10.70658 -10.63491 -10.55557 -10.36330 -10.13233 -9.80524 -9.60594 -9.39921 -9.28351 -8.38794 -8.30703 -8.24132 -6.77806 -6.02934 -3.25821 1.09154 1.24003 2.76865 3.34780 3.38315 3.49181 3.53545 3.57383 3.95142 4.56903 4.61786 4.79921 4.84482 4.91161 4.95528 4.96653 5.06875 5.08953 5.12095 5.14530 5.29522 5.32438 5.40494 5.47653 5.55183 5.67856 5.70601 5.76736 5.91091 5.95085 6.02195 6.04134 6.08979 6.16048 6.22368 6.24554 6.29565 6.44832 6.54906 6.64851 6.70960 6.95016 6.98332 7.08619 7.17462 7.21766 7.88192 8.05765 8.34200 8.43439 9.04867 9.77499 10.20718 11.13035 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.011092 B = 0.003734 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2523.663856 B = 7496.744408 C = 9306.187951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.149 4.149 3 C 0.152 3.848 4 N -0.592 5.592 5 C -0.272 4.272 6 H 0.078 0.922 7 C 0.043 3.957 8 N -0.879 5.879 9 Si 0.841 3.159 10 H -0.291 1.291 11 H -0.295 1.295 12 H -0.262 1.262 13 C 0.129 3.871 14 C 0.092 3.908 15 H 0.113 0.887 16 O -0.546 6.546 17 C 0.038 3.962 18 O -0.299 6.299 19 C 0.035 3.965 20 C 0.146 3.854 21 O -0.298 6.298 22 C 0.026 3.974 23 C -0.238 4.238 24 C -0.050 4.050 25 C -0.237 4.237 26 C 0.148 3.852 27 O -0.295 6.295 28 C 0.026 3.974 29 H 0.047 0.953 30 H 0.050 0.950 31 H 0.042 0.958 32 H 0.061 0.939 33 H 0.046 0.954 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.262 0.738 37 H 0.038 0.962 38 H 0.063 0.937 39 H 0.357 0.643 40 H 0.046 0.954 41 H 0.056 0.944 42 H 0.054 0.946 43 H 0.055 0.945 44 H 0.101 0.899 45 H 0.132 0.868 46 H 0.129 0.871 47 H 0.133 0.867 48 H 0.055 0.945 49 H 0.055 0.945 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.422 5.364 20.777 21.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.189 4.189 3 C 0.026 3.974 4 N -0.312 5.312 5 C -0.400 4.400 6 H 0.096 0.904 7 C -0.158 4.158 8 N -0.519 5.519 9 Si 0.668 3.332 10 H -0.218 1.218 11 H -0.222 1.222 12 H -0.187 1.187 13 C 0.002 3.998 14 C 0.030 3.970 15 H 0.131 0.869 16 O -0.349 6.349 17 C -0.038 4.038 18 O -0.215 6.215 19 C -0.011 4.011 20 C 0.099 3.901 21 O -0.210 6.210 22 C -0.069 4.069 23 C -0.257 4.257 24 C -0.069 4.069 25 C -0.256 4.256 26 C 0.101 3.899 27 O -0.207 6.207 28 C -0.069 4.069 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.056 0.944 38 H 0.081 0.919 39 H 0.202 0.798 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.120 0.880 45 H 0.150 0.850 46 H 0.146 0.854 47 H 0.151 0.849 48 H 0.074 0.926 49 H 0.073 0.927 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.436 5.875 19.725 20.631 hybrid contribution 0.770 -1.657 1.481 2.352 sum 2.207 4.218 21.206 21.734 Atomic orbital electron populations 1.21716 0.97200 1.00352 1.01096 1.22179 0.93895 1.01289 1.01501 1.20965 0.83792 0.92860 0.99753 1.43929 1.00517 1.85338 1.01389 1.18734 1.03176 1.27705 0.90354 0.90443 1.25388 0.95960 0.98018 0.96454 1.70082 1.03542 1.37154 1.41084 0.87493 0.76620 0.88009 0.81066 1.21840 1.22194 1.18713 1.21708 0.97189 0.92290 0.88607 1.22936 0.81922 0.98834 0.93283 0.86883 1.86651 1.30699 1.57192 1.60363 1.23687 0.99827 0.82247 0.97990 1.86304 1.67507 1.26589 1.41129 1.17163 0.86805 1.11133 0.86022 1.19063 0.83212 0.95296 0.92507 1.86224 1.17605 1.86964 1.30222 1.23102 1.00025 1.01119 0.82664 1.21040 0.94577 1.12557 0.97564 1.20670 0.93880 0.95582 0.96726 1.21077 1.00119 1.12209 0.92165 1.19149 0.91035 0.94742 0.85024 1.86276 1.22495 1.86646 1.25330 1.23144 0.78434 1.00949 1.04400 0.93431 0.93069 0.93910 0.92031 0.93511 0.93386 0.93315 0.92824 0.94379 0.91928 0.79819 0.93573 0.92571 0.92735 0.92629 0.88019 0.85050 0.85356 0.84942 0.92611 0.92658 0.87701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.91 37.16 0.37 -1.78 16 2 C -0.15 -2.75 6.26 -26.73 -0.17 -2.92 16 3 C 0.15 3.11 5.49 -4.04 -0.02 3.09 16 4 N -0.59 -14.16 2.10 -173.24 -0.36 -14.52 16 5 C -0.27 -7.63 9.81 -15.06 -0.15 -7.77 16 6 H 0.08 2.36 8.06 -52.48 -0.42 1.94 16 7 C 0.04 1.24 5.04 -17.43 -0.09 1.15 16 8 N -0.88 -26.64 13.97 55.49 0.78 -25.87 16 9 Si 0.84 21.38 26.25 -169.99 -4.46 16.91 16 10 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 11 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 12 H -0.26 -6.29 5.72 56.52 0.32 -5.97 16 13 C 0.13 2.82 3.58 -4.04 -0.01 2.81 16 14 C 0.09 1.90 3.48 -26.74 -0.09 1.81 16 15 H 0.11 2.75 8.14 -51.93 -0.42 2.33 16 16 O -0.55 -10.64 11.77 -38.90 -0.46 -11.10 16 17 C 0.04 0.71 5.69 37.15 0.21 0.92 16 18 O -0.30 -5.86 9.60 -47.95 -0.46 -6.32 16 19 C 0.03 0.58 5.75 -39.03 -0.22 0.36 16 20 C 0.15 2.07 6.70 -39.15 -0.26 1.81 16 21 O -0.30 -4.09 10.28 -34.32 -0.35 -4.44 16 22 C 0.03 0.22 9.81 101.05 0.99 1.21 16 23 C -0.24 -2.60 9.04 -39.42 -0.36 -2.96 16 24 C -0.05 -0.50 10.04 -39.59 -0.40 -0.90 16 25 C -0.24 -2.72 9.04 -39.43 -0.36 -3.08 16 26 C 0.15 2.23 6.70 -39.15 -0.26 1.97 16 27 O -0.30 -4.70 10.28 -34.33 -0.35 -5.05 16 28 C 0.03 0.27 9.81 101.05 0.99 1.26 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.05 0.90 6.68 -51.93 -0.35 0.55 16 35 H 0.05 1.03 8.04 -51.93 -0.42 0.61 16 36 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 37 H 0.04 0.75 8.11 -51.93 -0.42 0.33 16 38 H 0.06 1.48 4.22 -51.93 -0.22 1.26 16 39 H 0.36 5.54 8.99 45.56 0.41 5.95 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.05 0.37 7.65 -51.93 -0.40 -0.03 16 43 H 0.06 0.39 7.67 -51.93 -0.40 -0.01 16 44 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.13 1.06 6.29 -52.49 -0.33 0.73 16 46 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 47 H 0.13 1.17 6.29 -52.49 -0.33 0.84 16 48 H 0.06 0.48 7.66 -51.93 -0.40 0.08 16 49 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 50 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 405.44 15.07 6.11 6.11 Total: -1.00 -34.52 405.44 -6.93 -41.45 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -7.53 Total: 5.85 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: 0.17 Total: -3.02 kcal Atomic # 7 Polarization: -40.80 SS G_CDS: 0.41 Total: -40.39 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -1.62 Total: -26.91 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.46 Total: 16.91 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.52 -6.93 -41.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299404662.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.038 kcal (2) G-P(sol) polarization free energy of solvation -34.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds