Wall clock time and date at job start Tue Mar 31 2020 23:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47308 * 2 1 4 4 N 1.46494 * 109.47607 * 180.02562 * 3 2 1 5 5 C 1.36930 * 120.00323 * 89.99470 * 4 3 2 6 6 H 1.08004 * 119.99612 * 33.92660 * 5 4 3 7 7 C 1.38808 * 120.00431 * 214.19786 * 5 4 3 8 8 N 1.31623 * 120.00502 * 213.90926 * 7 5 4 9 9 Si 1.86802 * 119.99893 * 33.90637 * 7 5 4 10 10 H 1.48500 * 109.47077 * 93.55644 * 9 7 5 11 11 H 1.48500 * 109.46930 * 213.55521 * 9 7 5 12 12 H 1.48496 * 109.46884 * 333.55675 * 9 7 5 13 13 C 1.46503 * 119.99686 * 269.99774 * 4 3 2 14 14 C 1.52994 * 109.47357 * 274.64543 * 13 4 3 15 15 H 1.08997 * 109.47376 * 305.52843 * 14 13 4 16 16 O 1.42906 * 109.46938 * 65.52346 * 14 13 4 17 17 C 1.52995 * 109.47293 * 185.52314 * 14 13 4 18 18 O 1.42906 * 109.47344 * 173.85424 * 17 14 13 19 19 C 1.36096 * 116.99982 * 179.97438 * 18 17 14 20 20 C 1.38976 * 120.08996 * 269.72204 * 19 18 17 21 21 O 1.35998 * 120.04599 * 0.02562 * 20 19 18 22 22 C 1.42891 * 117.00179 * 179.97438 * 21 20 19 23 23 C 1.38667 * 119.90894 * 179.72403 * 20 19 18 24 24 C 1.38236 * 120.08784 * 0.55525 * 23 20 19 25 25 C 1.38224 * 120.17782 * 359.72218 * 24 23 20 26 26 C 1.38668 * 120.09048 * 0.02562 * 25 24 23 27 27 O 1.36003 * 120.04365 * 180.02562 * 26 25 24 28 28 C 1.42902 * 116.99882 * 359.97438 * 27 26 25 29 29 H 1.09000 * 109.47045 * 299.99965 * 1 2 3 30 30 H 1.09003 * 109.46688 * 60.00228 * 1 2 3 31 31 H 1.09004 * 109.46928 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47489 * 239.99823 * 2 1 3 33 33 H 1.09004 * 109.47440 * 119.99229 * 2 1 3 34 34 H 1.08997 * 109.46990 * 59.99517 * 3 2 1 35 35 H 1.09000 * 109.46949 * 300.00057 * 3 2 1 36 36 H 0.96999 * 120.00675 * 179.97438 * 8 7 5 37 37 H 1.09003 * 109.46975 * 34.65291 * 13 4 3 38 38 H 1.09004 * 109.47150 * 154.64928 * 13 4 3 39 39 H 0.96703 * 113.99838 * 59.99982 * 16 14 13 40 40 H 1.09002 * 109.47245 * 293.85200 * 17 14 13 41 41 H 1.08999 * 109.47237 * 53.85207 * 17 14 13 42 42 H 1.08997 * 109.47124 * 299.99538 * 22 21 20 43 43 H 1.08997 * 109.47350 * 59.99510 * 22 21 20 44 44 H 1.08998 * 109.47286 * 179.97438 * 22 21 20 45 45 H 1.07994 * 119.95562 * 180.29877 * 23 20 19 46 46 H 1.07998 * 119.90892 * 179.74119 * 24 23 20 47 47 H 1.07997 * 119.95510 * 179.97438 * 25 24 23 48 48 H 1.08997 * 109.46884 * 300.00039 * 28 27 26 49 49 H 1.08998 * 109.47300 * 59.99658 * 28 27 26 50 50 H 1.09003 * 109.47084 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1892 1.4427 -1.1867 6 1 3.7867 1.9648 -2.0422 7 6 5.3973 0.7671 -1.2912 8 7 6.3501 1.2387 -2.0672 9 14 5.6709 -0.8113 -0.3304 10 1 5.3168 -1.9761 -1.1807 11 1 7.0978 -0.9061 0.0698 12 1 4.8156 -0.8063 0.8835 13 6 4.2380 1.4425 1.2679 14 6 4.3919 2.8801 1.7681 15 1 4.8546 3.4878 0.9905 16 8 3.1052 3.4138 2.0872 17 6 5.2739 2.8935 3.0182 18 8 5.5355 4.2449 3.4022 19 6 6.3111 4.4349 4.5043 20 6 5.7249 4.5313 5.7607 21 8 4.3746 4.4354 5.8913 22 6 3.8413 4.5430 7.2125 23 6 6.5192 4.7192 6.8817 24 6 7.8914 4.8221 6.7494 25 6 8.4777 4.7325 5.5009 26 6 7.6909 4.5394 4.3755 27 8 8.2689 4.4509 3.1476 28 6 9.6922 4.5660 3.0907 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8901 34 1 1.6767 1.9564 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 7.1945 0.7668 -2.1400 37 1 3.6878 0.8580 2.0053 38 1 5.2239 1.0026 1.1178 39 1 2.6345 2.9216 2.7737 40 1 4.7611 2.3778 3.8302 41 1 6.2155 2.3879 2.8040 42 1 4.2529 3.7495 7.8362 43 1 4.1083 5.5120 7.6343 44 1 2.7560 4.4501 7.1750 45 1 6.0649 4.7894 7.8589 46 1 8.5069 4.9726 7.6240 47 1 9.5501 4.8138 5.4017 48 1 9.9943 5.5352 3.4875 49 1 10.1450 3.7728 3.6855 50 1 10.0227 4.4785 2.0557 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299404662.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:05 Heat of formation + Delta-G solvation = -131.931259 kcal Electronic energy + Delta-G solvation = -30950.469445 eV Core-core repulsion = 26751.379034 eV Total energy + Delta-G solvation = -4199.090411 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.75814 -39.99917 -39.68351 -38.41935 -37.29841 -36.76443 -34.62235 -33.21147 -31.82680 -30.60671 -30.54643 -28.69749 -27.65555 -27.48157 -27.02309 -23.92689 -23.33556 -22.91112 -22.87337 -21.55824 -19.88668 -19.12321 -18.27246 -18.13751 -17.49234 -17.47089 -17.29807 -16.89785 -16.70422 -16.44491 -15.91083 -15.79847 -15.73774 -15.64950 -15.53909 -14.93105 -14.57631 -14.38001 -14.29135 -13.98300 -13.69981 -13.60981 -13.30764 -13.12571 -13.01314 -12.81443 -12.48672 -12.45177 -12.40588 -12.27189 -12.24494 -12.06397 -12.05355 -11.93251 -11.67512 -11.39920 -11.29179 -11.03266 -10.89601 -10.51243 -9.30700 -9.19211 -8.76151 -8.25675 -5.45820 0.13633 0.32346 1.30734 1.40878 1.48395 1.90963 2.34459 2.42808 2.72626 2.77053 3.01493 3.43642 3.55341 3.87242 3.96911 4.01492 4.04323 4.11538 4.18468 4.26516 4.28195 4.34238 4.35350 4.37544 4.40128 4.41607 4.42732 4.47890 4.58741 4.68249 4.69739 4.76303 4.80325 4.88615 5.00849 5.13322 5.15942 5.21154 5.23273 5.31144 5.36315 5.44382 5.46088 5.61960 5.92568 6.10154 6.17417 6.33583 6.72583 6.94133 7.00291 7.67028 8.09812 8.94881 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.011092 B = 0.003734 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2523.663856 B = 7496.744408 C = 9306.187951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.141 4.141 3 C 0.150 3.850 4 N -0.603 5.603 5 C -0.268 4.268 6 H 0.034 0.966 7 C -0.008 4.008 8 N -0.929 5.929 9 Si 0.909 3.091 10 H -0.295 1.295 11 H -0.296 1.296 12 H -0.235 1.235 13 C 0.129 3.871 14 C 0.109 3.891 15 H 0.062 0.938 16 O -0.554 6.554 17 C 0.051 3.949 18 O -0.327 6.327 19 C -0.018 4.018 20 C 0.138 3.862 21 O -0.328 6.328 22 C 0.016 3.984 23 C -0.232 4.232 24 C -0.036 4.036 25 C -0.235 4.235 26 C 0.126 3.874 27 O -0.338 6.338 28 C 0.018 3.982 29 H 0.066 0.934 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.034 0.966 33 H 0.052 0.948 34 H 0.071 0.929 35 H 0.031 0.969 36 H 0.263 0.737 37 H 0.072 0.928 38 H 0.043 0.957 39 H 0.378 0.622 40 H 0.068 0.932 41 H 0.043 0.957 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.115 0.885 45 H 0.166 0.834 46 H 0.172 0.828 47 H 0.159 0.841 48 H 0.076 0.924 49 H 0.073 0.927 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.995 4.563 25.574 25.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.181 4.181 3 C 0.026 3.974 4 N -0.324 5.324 5 C -0.397 4.397 6 H 0.052 0.948 7 C -0.206 4.206 8 N -0.572 5.572 9 Si 0.735 3.265 10 H -0.223 1.223 11 H -0.223 1.223 12 H -0.158 1.158 13 C 0.003 3.997 14 C 0.047 3.953 15 H 0.080 0.920 16 O -0.360 6.360 17 C -0.025 4.025 18 O -0.244 6.244 19 C -0.063 4.063 20 C 0.091 3.909 21 O -0.241 6.241 22 C -0.078 4.078 23 C -0.251 4.251 24 C -0.054 4.054 25 C -0.254 4.254 26 C 0.080 3.920 27 O -0.251 6.251 28 C -0.076 4.076 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.050 0.950 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.061 0.939 39 H 0.226 0.774 40 H 0.086 0.914 41 H 0.061 0.939 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.133 0.867 45 H 0.183 0.817 46 H 0.190 0.810 47 H 0.177 0.823 48 H 0.095 0.905 49 H 0.092 0.908 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.969 5.068 24.577 25.113 hybrid contribution 0.870 -1.233 0.073 1.511 sum 1.839 3.835 24.651 25.015 Atomic orbital electron populations 1.21647 0.93979 1.01860 1.02096 1.22040 0.96681 0.98913 1.00452 1.21082 0.81719 0.94636 1.00007 1.44020 1.01956 1.85706 1.00734 1.18569 1.03375 1.26764 0.91008 0.94782 1.25904 0.95675 1.00598 0.98390 1.70184 1.04239 1.38564 1.44192 0.86413 0.76764 0.82784 0.80542 1.22277 1.22302 1.15842 1.21749 0.96432 0.93242 0.88295 1.22402 0.82789 0.96946 0.93197 0.91966 1.86599 1.30274 1.57761 1.61398 1.23397 0.98783 0.82917 0.97386 1.86232 1.68552 1.26472 1.43099 1.17702 0.87633 1.14716 0.86242 1.19217 0.83898 0.95340 0.92446 1.86174 1.17574 1.86992 1.33346 1.23432 1.00825 1.02622 0.80883 1.21452 0.94866 1.10938 0.97846 1.21228 0.93991 0.92755 0.97433 1.21429 1.01211 1.11179 0.91587 1.19450 0.91044 0.95741 0.85790 1.86207 1.25044 1.87141 1.26729 1.23390 0.76349 1.02816 1.05065 0.91495 0.93067 0.92155 0.94674 0.92918 0.91119 0.95037 0.92836 0.90952 0.93863 0.77399 0.91353 0.93906 0.90928 0.91165 0.86662 0.81710 0.81013 0.82319 0.90505 0.90837 0.87778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 9.91 71.98 0.71 -2.97 16 2 C -0.14 -5.00 6.26 30.60 0.19 -4.81 16 3 C 0.15 6.10 5.49 86.38 0.47 6.58 16 4 N -0.60 -29.36 2.10 -702.02 -1.47 -30.84 16 5 C -0.27 -15.79 9.81 84.03 0.82 -14.96 16 6 H 0.03 2.25 8.06 -2.91 -0.02 2.23 16 7 C -0.01 -0.46 5.04 84.86 0.43 -0.03 16 8 N -0.93 -59.29 13.97 21.65 0.30 -58.99 16 9 Si 0.91 45.36 26.25 68.60 1.80 47.16 16 10 H -0.29 -14.83 7.11 99.48 0.71 -14.13 16 11 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 12 H -0.24 -10.57 5.72 99.48 0.57 -10.00 16 13 C 0.13 5.62 3.58 86.38 0.31 5.93 16 14 C 0.11 4.63 3.48 30.59 0.11 4.74 16 15 H 0.06 3.28 8.14 -2.39 -0.02 3.26 16 16 O -0.55 -21.54 11.77 -145.47 -1.71 -23.25 16 17 C 0.05 1.94 5.69 71.98 0.41 2.35 16 18 O -0.33 -13.37 9.60 -67.97 -0.65 -14.02 16 19 C -0.02 -0.61 5.75 22.62 0.13 -0.48 16 20 C 0.14 3.73 6.70 22.55 0.15 3.88 16 21 O -0.33 -8.53 10.28 -79.59 -0.82 -9.35 16 22 C 0.02 0.22 9.81 113.37 1.11 1.34 16 23 C -0.23 -4.26 9.04 22.37 0.20 -4.05 16 24 C -0.04 -0.58 10.04 22.27 0.22 -0.35 16 25 C -0.24 -4.84 9.04 22.37 0.20 -4.64 16 26 C 0.13 3.83 6.70 22.55 0.15 3.98 16 27 O -0.34 -11.21 10.28 -79.64 -0.82 -12.03 16 28 C 0.02 0.37 9.81 113.37 1.11 1.49 16 29 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 32 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.07 2.53 6.68 -2.39 -0.02 2.52 16 35 H 0.03 1.36 8.04 -2.39 -0.02 1.34 16 36 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 37 H 0.07 2.65 8.11 -2.39 -0.02 2.63 16 38 H 0.04 2.05 4.22 -2.39 -0.01 2.04 16 39 H 0.38 11.02 8.99 -74.06 -0.67 10.35 16 40 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.07 0.72 7.65 -2.39 -0.02 0.70 16 43 H 0.07 0.74 7.67 -2.39 -0.02 0.72 16 44 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.17 1.82 6.29 -2.91 -0.02 1.80 16 46 H 0.17 1.25 8.06 -2.91 -0.02 1.23 16 47 H 0.16 2.29 6.29 -2.91 -0.02 2.27 16 48 H 0.08 1.24 7.66 -2.39 -0.02 1.22 16 49 H 0.07 1.23 7.66 -2.39 -0.02 1.21 16 50 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -81.79 405.44 3.50 -78.29 By element: Atomic # 1 Polarization: 24.91 SS G_CDS: 0.13 Total: 25.04 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: 6.74 Total: -2.01 kcal Atomic # 7 Polarization: -88.65 SS G_CDS: -1.17 Total: -89.82 kcal Atomic # 8 Polarization: -54.65 SS G_CDS: -4.00 Total: -58.66 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.80 Total: 47.16 kcal Total: -81.79 3.50 -78.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299404662.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.644 kcal (2) G-P(sol) polarization free energy of solvation -81.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds