Wall clock time and date at job start Tue Mar 31 2020 23:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53003 * 109.47810 * 2 1 4 4 N 1.46495 * 109.47490 * 180.02562 * 3 2 1 5 5 C 1.36938 * 120.00048 * 270.00286 * 4 3 2 6 6 H 1.08001 * 119.99598 * 326.51718 * 5 4 3 7 7 C 1.38809 * 119.99829 * 146.51793 * 5 4 3 8 8 N 1.31618 * 120.00228 * 335.24865 * 7 5 4 9 9 Si 1.86806 * 119.99864 * 155.24979 * 7 5 4 10 10 H 1.48499 * 109.46744 * 84.98131 * 9 7 5 11 11 H 1.48497 * 109.47278 * 204.98075 * 9 7 5 12 12 H 1.48502 * 109.46946 * 324.98389 * 9 7 5 13 13 C 1.46500 * 119.99659 * 90.00281 * 4 3 2 14 14 C 1.52995 * 109.46997 * 95.22674 * 13 4 3 15 15 H 1.09004 * 109.47588 * 60.00004 * 14 13 4 16 16 O 1.42896 * 109.47203 * 299.99629 * 14 13 4 17 17 C 1.53001 * 109.47066 * 179.97438 * 14 13 4 18 18 O 1.42905 * 109.47249 * 184.99840 * 17 14 13 19 19 C 1.36089 * 116.99863 * 180.02562 * 18 17 14 20 20 C 1.38977 * 120.08849 * 269.72635 * 19 18 17 21 21 O 1.35997 * 120.04469 * 359.97438 * 20 19 18 22 22 C 1.42907 * 117.00273 * 179.97438 * 21 20 19 23 23 C 1.38673 * 119.91040 * 179.72894 * 20 19 18 24 24 C 1.38232 * 120.08912 * 0.54261 * 23 20 19 25 25 C 1.38229 * 120.17754 * 359.72999 * 24 23 20 26 26 C 1.38665 * 120.08894 * 359.97438 * 25 24 23 27 27 O 1.36000 * 120.04421 * 180.02562 * 26 25 24 28 28 C 1.42898 * 116.99926 * 359.97302 * 27 26 25 29 29 H 1.09010 * 109.46871 * 299.99868 * 1 2 3 30 30 H 1.09000 * 109.47294 * 59.99385 * 1 2 3 31 31 H 1.09005 * 109.47522 * 179.97438 * 1 2 3 32 32 H 1.09009 * 109.47366 * 239.99951 * 2 1 3 33 33 H 1.09000 * 109.47294 * 120.00615 * 2 1 3 34 34 H 1.09005 * 109.46353 * 60.00201 * 3 2 1 35 35 H 1.08997 * 109.46733 * 300.00528 * 3 2 1 36 36 H 0.96998 * 119.99842 * 179.97438 * 8 7 5 37 37 H 1.08996 * 109.47100 * 335.22011 * 13 4 3 38 38 H 1.09001 * 109.46779 * 215.22273 * 13 4 3 39 39 H 0.96701 * 114.00136 * 299.99878 * 16 14 13 40 40 H 1.09007 * 109.47344 * 64.99906 * 17 14 13 41 41 H 1.08999 * 109.47475 * 304.99978 * 17 14 13 42 42 H 1.08998 * 109.47400 * 180.02562 * 22 21 20 43 43 H 1.09002 * 109.47003 * 300.01093 * 22 21 20 44 44 H 1.08997 * 109.46790 * 60.00346 * 22 21 20 45 45 H 1.07999 * 119.95687 * 180.25587 * 23 20 19 46 46 H 1.07992 * 119.91024 * 179.74643 * 24 23 20 47 47 H 1.07999 * 119.95621 * 179.97438 * 25 24 23 48 48 H 1.09000 * 109.47252 * 299.99912 * 28 27 26 49 49 H 1.08999 * 109.46958 * 60.00544 * 28 27 26 50 50 H 1.09003 * 109.46939 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1902 1.4421 1.1850 6 1 3.7850 1.9580 2.0430 7 6 5.4056 0.7788 1.2841 8 7 5.6790 -0.2190 0.4705 9 14 6.6531 1.3024 2.5721 10 1 6.3442 0.6330 3.8612 11 1 8.0160 0.9152 2.1274 12 1 6.5907 2.7752 2.7517 13 6 4.2369 1.4426 -1.2697 14 6 4.6056 2.8791 -1.6455 15 1 5.2324 3.3096 -0.8645 16 8 3.4143 3.6563 -1.7826 17 6 5.3705 2.8793 -2.9706 18 8 5.8157 4.2053 -3.2635 19 6 6.5172 4.3809 -4.4163 20 6 7.9019 4.2628 -4.4143 21 8 8.5588 3.9719 -3.2595 22 6 9.9820 3.8651 -3.3318 23 6 8.6125 4.4370 -5.5923 24 6 7.9464 4.7388 -6.7653 25 6 6.5697 4.8627 -6.7704 26 6 5.8512 4.6840 -5.5980 27 8 4.4967 4.8056 -5.6042 28 6 3.8792 5.1196 -6.8540 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6767 1.9562 0.8901 35 1 1.6767 1.9563 -0.8899 36 1 6.5284 -0.6822 0.5395 37 1 3.6102 1.0121 -2.0506 38 1 5.1456 0.8498 -1.1651 39 1 2.8080 3.3303 -2.4618 40 1 4.7146 2.5316 -3.7689 41 1 6.2317 2.2157 -2.8931 42 1 10.3794 3.6299 -2.3445 43 1 10.2519 3.0728 -4.0301 44 1 10.4002 4.8109 -3.6763 45 1 9.6883 4.3413 -5.5924 46 1 8.5030 4.8779 -7.6802 47 1 6.0529 5.0990 -7.6889 48 1 4.2606 6.0736 -7.2182 49 1 4.1063 4.3372 -7.5781 50 1 2.7998 5.1879 -6.7190 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299404664.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:09 Heat of formation + Delta-G solvation = -114.646660 kcal Electronic energy + Delta-G solvation = -30888.632740 eV Core-core repulsion = 26690.291846 eV Total energy + Delta-G solvation = -4198.340894 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.72844 -39.02580 -38.01917 -36.77257 -36.22736 -34.95777 -32.78729 -30.83924 -30.39057 -29.68577 -29.03585 -27.90655 -26.74645 -25.49693 -25.29734 -22.55582 -21.95728 -21.92379 -20.83387 -19.82700 -18.83885 -17.39789 -17.07304 -16.71662 -16.52206 -16.14437 -15.57661 -15.40942 -15.25283 -14.88040 -14.82070 -14.62686 -14.16261 -14.04206 -13.75674 -13.47440 -13.14175 -12.92179 -12.74345 -12.59079 -12.33599 -12.24628 -11.99564 -11.64112 -11.59834 -11.58634 -11.25647 -11.11369 -10.90309 -10.83882 -10.65656 -10.51575 -10.28323 -10.06469 -9.90391 -9.89924 -9.57921 -9.50083 -9.13164 -8.44072 -8.27152 -8.19927 -6.52093 -5.71664 -3.23831 1.13675 1.27613 2.80326 3.40354 3.43571 3.48817 3.55728 3.60160 4.03325 4.56173 4.65371 4.83088 4.93518 4.95510 4.99854 5.02857 5.08217 5.15425 5.25924 5.33731 5.35507 5.42494 5.44775 5.56363 5.70904 5.82088 5.87022 5.92131 5.98323 6.06401 6.13377 6.23906 6.25693 6.28411 6.38672 6.41524 6.46016 6.60133 6.76096 6.80213 7.12004 7.14648 7.18506 7.24745 7.34714 7.59617 7.89600 7.96474 8.52975 8.56282 9.23936 9.89033 10.45246 11.26395 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.010291 B = 0.003762 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2720.184385 B = 7441.844856 C = 9663.411697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.142 4.142 3 C 0.154 3.846 4 N -0.573 5.573 5 C -0.250 4.250 6 H 0.062 0.938 7 C 0.007 3.993 8 N -0.888 5.888 9 Si 0.891 3.109 10 H -0.286 1.286 11 H -0.290 1.290 12 H -0.278 1.278 13 C 0.120 3.880 14 C 0.094 3.906 15 H 0.102 0.898 16 O -0.550 6.550 17 C 0.041 3.959 18 O -0.302 6.302 19 C 0.037 3.963 20 C 0.146 3.854 21 O -0.296 6.296 22 C 0.026 3.974 23 C -0.236 4.236 24 C -0.052 4.052 25 C -0.238 4.238 26 C 0.145 3.855 27 O -0.297 6.297 28 C 0.026 3.974 29 H 0.047 0.953 30 H 0.044 0.956 31 H 0.041 0.959 32 H 0.048 0.952 33 H 0.061 0.939 34 H 0.041 0.959 35 H 0.036 0.964 36 H 0.253 0.747 37 H 0.027 0.973 38 H 0.106 0.894 39 H 0.355 0.645 40 H 0.045 0.955 41 H 0.057 0.943 42 H 0.103 0.897 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.132 0.868 46 H 0.128 0.872 47 H 0.131 0.869 48 H 0.055 0.945 49 H 0.054 0.946 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.002 7.646 -17.615 19.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.182 4.182 3 C 0.028 3.972 4 N -0.292 5.292 5 C -0.380 4.380 6 H 0.079 0.921 7 C -0.193 4.193 8 N -0.531 5.531 9 Si 0.721 3.279 10 H -0.213 1.213 11 H -0.216 1.216 12 H -0.203 1.203 13 C -0.008 4.008 14 C 0.032 3.968 15 H 0.120 0.880 16 O -0.352 6.352 17 C -0.034 4.034 18 O -0.219 6.219 19 C -0.009 4.009 20 C 0.099 3.901 21 O -0.209 6.209 22 C -0.069 4.069 23 C -0.255 4.255 24 C -0.070 4.070 25 C -0.257 4.257 26 C 0.098 3.902 27 O -0.210 6.210 28 C -0.069 4.069 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.045 0.955 38 H 0.123 0.877 39 H 0.199 0.801 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.121 0.879 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.150 0.850 46 H 0.146 0.854 47 H 0.149 0.851 48 H 0.073 0.927 49 H 0.073 0.927 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.151 7.959 -16.610 18.686 hybrid contribution 0.962 -0.321 -0.510 1.135 sum 4.114 7.638 -17.120 19.192 Atomic orbital electron populations 1.21752 0.97845 1.00170 1.00699 1.22131 0.92987 1.01179 1.01897 1.20903 0.84928 0.92857 0.98508 1.43611 0.99470 1.84385 1.01726 1.19064 1.02491 1.26055 0.90377 0.92062 1.24995 1.00652 0.95289 0.98316 1.69977 1.23435 1.19292 1.40435 0.86488 0.81079 0.78956 0.81422 1.21317 1.21559 1.20349 1.21489 1.00162 0.92197 0.86932 1.22876 0.84873 0.96119 0.92896 0.88026 1.86618 1.31919 1.56091 1.60615 1.23691 0.98270 0.82554 0.98923 1.86299 1.70853 1.29349 1.35352 1.17180 0.86956 1.10115 0.86608 1.19134 0.90823 0.94271 0.85840 1.86262 1.20874 1.84558 1.29168 1.23126 0.78493 1.01046 1.04238 1.21065 1.00356 1.11780 0.92349 1.20657 0.93374 0.95598 0.97363 1.21038 0.95181 1.12228 0.97214 1.19077 0.83114 0.95424 0.92546 1.86234 1.16491 1.84767 1.33465 1.23103 0.98768 1.00063 0.84970 0.93411 0.93694 0.94013 0.93284 0.91996 0.94108 0.94608 0.93690 0.95462 0.87702 0.80072 0.93704 0.92511 0.87909 0.92604 0.92652 0.85012 0.85393 0.85072 0.92682 0.92717 0.88028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.91 37.15 0.37 -1.96 16 2 C -0.14 -2.85 6.26 -26.74 -0.17 -3.02 16 3 C 0.15 3.34 5.45 -4.04 -0.02 3.32 16 4 N -0.57 -14.38 2.35 -173.24 -0.41 -14.79 16 5 C -0.25 -6.94 9.45 -15.06 -0.14 -7.08 16 6 H 0.06 1.72 7.94 -52.49 -0.42 1.31 16 7 C 0.01 0.19 4.96 -17.43 -0.09 0.10 16 8 N -0.89 -25.30 11.34 55.49 0.63 -24.67 16 9 Si 0.89 21.97 29.62 -169.99 -5.04 16.93 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 C 0.12 2.80 5.00 -4.04 -0.02 2.78 16 14 C 0.09 2.05 3.49 -26.73 -0.09 1.96 16 15 H 0.10 2.56 8.14 -51.93 -0.42 2.13 16 16 O -0.55 -11.58 12.47 -40.06 -0.50 -12.08 16 17 C 0.04 0.80 5.70 37.16 0.21 1.01 16 18 O -0.30 -6.11 9.59 -48.20 -0.46 -6.57 16 19 C 0.04 0.64 5.75 -39.03 -0.22 0.42 16 20 C 0.15 2.25 6.70 -39.15 -0.26 1.99 16 21 O -0.30 -4.74 10.28 -34.32 -0.35 -5.09 16 22 C 0.03 0.28 9.81 101.05 0.99 1.27 16 23 C -0.24 -2.78 9.04 -39.42 -0.36 -3.13 16 24 C -0.05 -0.53 10.04 -39.59 -0.40 -0.93 16 25 C -0.24 -2.68 9.04 -39.43 -0.36 -3.04 16 26 C 0.15 2.13 6.70 -39.15 -0.26 1.87 16 27 O -0.30 -4.25 10.28 -34.32 -0.35 -4.60 16 28 C 0.03 0.23 9.81 101.05 0.99 1.22 16 29 H 0.05 0.73 8.14 -51.92 -0.42 0.30 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.05 1.02 8.14 -51.92 -0.42 0.60 16 33 H 0.06 1.40 8.14 -51.93 -0.42 0.97 16 34 H 0.04 0.90 8.04 -51.93 -0.42 0.48 16 35 H 0.04 0.71 7.49 -51.93 -0.39 0.32 16 36 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 37 H 0.03 0.59 8.03 -51.93 -0.42 0.17 16 38 H 0.11 2.77 5.35 -51.93 -0.28 2.49 16 39 H 0.35 6.16 8.97 45.56 0.41 6.57 16 40 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 42 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.06 0.50 7.65 -51.93 -0.40 0.10 16 44 H 0.05 0.47 7.67 -51.93 -0.40 0.08 16 45 H 0.13 1.19 6.29 -52.49 -0.33 0.86 16 46 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 47 H 0.13 1.10 6.29 -52.49 -0.33 0.77 16 48 H 0.05 0.40 7.66 -51.93 -0.40 0.01 16 49 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 50 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 411.18 15.07 6.20 6.20 Total: -1.00 -33.43 411.18 -7.66 -41.08 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -7.55 Total: 6.82 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: 0.17 Total: -3.23 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.22 Total: -39.46 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -1.67 Total: -28.35 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.04 Total: 16.93 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -33.43 -7.66 -41.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299404664.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.562 kcal (2) G-P(sol) polarization free energy of solvation -33.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds