Wall clock time and date at job start Tue Mar 31 2020 23:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53003 * 109.47810 * 2 1 4 4 N 1.46495 * 109.47490 * 180.02562 * 3 2 1 5 5 C 1.36938 * 120.00048 * 270.00286 * 4 3 2 6 6 H 1.08001 * 119.99598 * 326.51718 * 5 4 3 7 7 C 1.38809 * 119.99829 * 146.51793 * 5 4 3 8 8 N 1.31618 * 120.00228 * 335.24865 * 7 5 4 9 9 Si 1.86806 * 119.99864 * 155.24979 * 7 5 4 10 10 H 1.48499 * 109.46744 * 84.98131 * 9 7 5 11 11 H 1.48497 * 109.47278 * 204.98075 * 9 7 5 12 12 H 1.48502 * 109.46946 * 324.98389 * 9 7 5 13 13 C 1.46500 * 119.99659 * 90.00281 * 4 3 2 14 14 C 1.52995 * 109.46997 * 95.22674 * 13 4 3 15 15 H 1.09004 * 109.47588 * 60.00004 * 14 13 4 16 16 O 1.42896 * 109.47203 * 299.99629 * 14 13 4 17 17 C 1.53001 * 109.47066 * 179.97438 * 14 13 4 18 18 O 1.42905 * 109.47249 * 184.99840 * 17 14 13 19 19 C 1.36089 * 116.99863 * 180.02562 * 18 17 14 20 20 C 1.38977 * 120.08849 * 269.72635 * 19 18 17 21 21 O 1.35997 * 120.04469 * 359.97438 * 20 19 18 22 22 C 1.42907 * 117.00273 * 179.97438 * 21 20 19 23 23 C 1.38673 * 119.91040 * 179.72894 * 20 19 18 24 24 C 1.38232 * 120.08912 * 0.54261 * 23 20 19 25 25 C 1.38229 * 120.17754 * 359.72999 * 24 23 20 26 26 C 1.38665 * 120.08894 * 359.97438 * 25 24 23 27 27 O 1.36000 * 120.04421 * 180.02562 * 26 25 24 28 28 C 1.42898 * 116.99926 * 359.97302 * 27 26 25 29 29 H 1.09010 * 109.46871 * 299.99868 * 1 2 3 30 30 H 1.09000 * 109.47294 * 59.99385 * 1 2 3 31 31 H 1.09005 * 109.47522 * 179.97438 * 1 2 3 32 32 H 1.09009 * 109.47366 * 239.99951 * 2 1 3 33 33 H 1.09000 * 109.47294 * 120.00615 * 2 1 3 34 34 H 1.09005 * 109.46353 * 60.00201 * 3 2 1 35 35 H 1.08997 * 109.46733 * 300.00528 * 3 2 1 36 36 H 0.96998 * 119.99842 * 179.97438 * 8 7 5 37 37 H 1.08996 * 109.47100 * 335.22011 * 13 4 3 38 38 H 1.09001 * 109.46779 * 215.22273 * 13 4 3 39 39 H 0.96701 * 114.00136 * 299.99878 * 16 14 13 40 40 H 1.09007 * 109.47344 * 64.99906 * 17 14 13 41 41 H 1.08999 * 109.47475 * 304.99978 * 17 14 13 42 42 H 1.08998 * 109.47400 * 180.02562 * 22 21 20 43 43 H 1.09002 * 109.47003 * 300.01093 * 22 21 20 44 44 H 1.08997 * 109.46790 * 60.00346 * 22 21 20 45 45 H 1.07999 * 119.95687 * 180.25587 * 23 20 19 46 46 H 1.07992 * 119.91024 * 179.74643 * 24 23 20 47 47 H 1.07999 * 119.95621 * 179.97438 * 25 24 23 48 48 H 1.09000 * 109.47252 * 299.99912 * 28 27 26 49 49 H 1.08999 * 109.46958 * 60.00544 * 28 27 26 50 50 H 1.09003 * 109.46939 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1902 1.4421 1.1850 6 1 3.7850 1.9580 2.0430 7 6 5.4056 0.7788 1.2841 8 7 5.6790 -0.2190 0.4705 9 14 6.6531 1.3024 2.5721 10 1 6.3442 0.6330 3.8612 11 1 8.0160 0.9152 2.1274 12 1 6.5907 2.7752 2.7517 13 6 4.2369 1.4426 -1.2697 14 6 4.6056 2.8791 -1.6455 15 1 5.2324 3.3096 -0.8645 16 8 3.4143 3.6563 -1.7826 17 6 5.3705 2.8793 -2.9706 18 8 5.8157 4.2053 -3.2635 19 6 6.5172 4.3809 -4.4163 20 6 7.9019 4.2628 -4.4143 21 8 8.5588 3.9719 -3.2595 22 6 9.9820 3.8651 -3.3318 23 6 8.6125 4.4370 -5.5923 24 6 7.9464 4.7388 -6.7653 25 6 6.5697 4.8627 -6.7704 26 6 5.8512 4.6840 -5.5980 27 8 4.4967 4.8056 -5.6042 28 6 3.8792 5.1196 -6.8540 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6767 1.9562 0.8901 35 1 1.6767 1.9563 -0.8899 36 1 6.5284 -0.6822 0.5395 37 1 3.6102 1.0121 -2.0506 38 1 5.1456 0.8498 -1.1651 39 1 2.8080 3.3303 -2.4618 40 1 4.7146 2.5316 -3.7689 41 1 6.2317 2.2157 -2.8931 42 1 10.3794 3.6299 -2.3445 43 1 10.2519 3.0728 -4.0301 44 1 10.4002 4.8109 -3.6763 45 1 9.6883 4.3413 -5.5924 46 1 8.5030 4.8779 -7.6802 47 1 6.0529 5.0990 -7.6889 48 1 4.2606 6.0736 -7.2182 49 1 4.1063 4.3372 -7.5781 50 1 2.7998 5.1879 -6.7190 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299404664.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:08 Heat of formation + Delta-G solvation = -136.840674 kcal Electronic energy + Delta-G solvation = -30889.595145 eV Core-core repulsion = 26690.291846 eV Total energy + Delta-G solvation = -4199.303299 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.74929 -39.99754 -39.55594 -38.30854 -37.28006 -36.68570 -34.60071 -32.68516 -31.74196 -30.60452 -30.48173 -28.69710 -27.63144 -27.32685 -26.96314 -24.00242 -23.28016 -22.88046 -22.57869 -21.61155 -19.86315 -18.99470 -18.24547 -18.11761 -17.46758 -17.45019 -17.04643 -16.79582 -16.49282 -16.43173 -15.89285 -15.77271 -15.73832 -15.66000 -15.41573 -14.81423 -14.67879 -14.42665 -13.94712 -13.69869 -13.60939 -13.44315 -13.25804 -13.06712 -12.99659 -12.71553 -12.52984 -12.45630 -12.40624 -12.20917 -12.15370 -12.05120 -11.91649 -11.77243 -11.68493 -11.67036 -11.31934 -10.94517 -10.84444 -10.53359 -9.29507 -9.18941 -8.57441 -7.81674 -5.38177 0.14267 0.32705 1.41506 1.45138 1.55156 1.91417 2.36196 2.51502 2.72816 2.84983 3.23281 3.58407 3.72594 3.88083 3.99263 4.04886 4.11626 4.13900 4.25699 4.29359 4.29728 4.34430 4.38859 4.41997 4.42345 4.44617 4.53589 4.57311 4.66663 4.69069 4.74822 4.78227 4.87125 5.00296 5.14669 5.16084 5.21237 5.27163 5.34210 5.36396 5.46552 5.48117 5.57686 5.62890 5.78102 6.11040 6.33942 6.44407 6.73813 6.97803 7.16382 7.87289 8.37408 9.11907 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.010291 B = 0.003762 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2720.184385 B = 7441.844856 C = 9663.411697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.132 4.132 3 C 0.152 3.848 4 N -0.589 5.589 5 C -0.264 4.264 6 H 0.050 0.950 7 C -0.033 4.033 8 N -0.910 5.910 9 Si 0.944 3.056 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.282 1.282 13 C 0.127 3.873 14 C 0.112 3.888 15 H 0.059 0.941 16 O -0.558 6.558 17 C 0.058 3.942 18 O -0.328 6.328 19 C -0.018 4.018 20 C 0.127 3.873 21 O -0.338 6.338 22 C 0.018 3.982 23 C -0.235 4.235 24 C -0.037 4.037 25 C -0.232 4.232 26 C 0.136 3.864 27 O -0.329 6.329 28 C 0.016 3.984 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.038 0.962 33 H 0.028 0.972 34 H 0.034 0.966 35 H 0.057 0.943 36 H 0.252 0.748 37 H 0.044 0.956 38 H 0.076 0.924 39 H 0.373 0.627 40 H 0.060 0.940 41 H 0.042 0.958 42 H 0.105 0.895 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.160 0.840 46 H 0.173 0.827 47 H 0.165 0.835 48 H 0.071 0.929 49 H 0.072 0.928 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.093 8.453 -20.633 22.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.172 4.172 3 C 0.026 3.974 4 N -0.308 5.308 5 C -0.395 4.395 6 H 0.068 0.932 7 C -0.230 4.230 8 N -0.554 5.554 9 Si 0.772 3.228 10 H -0.205 1.205 11 H -0.213 1.213 12 H -0.208 1.208 13 C 0.000 4.000 14 C 0.050 3.950 15 H 0.077 0.923 16 O -0.363 6.363 17 C -0.018 4.018 18 O -0.244 6.244 19 C -0.063 4.063 20 C 0.081 3.919 21 O -0.251 6.251 22 C -0.076 4.076 23 C -0.253 4.253 24 C -0.054 4.054 25 C -0.251 4.251 26 C 0.089 3.911 27 O -0.242 6.242 28 C -0.077 4.077 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.047 0.953 34 H 0.052 0.948 35 H 0.075 0.925 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.094 0.906 39 H 0.220 0.780 40 H 0.078 0.922 41 H 0.060 0.940 42 H 0.123 0.877 43 H 0.091 0.909 44 H 0.095 0.905 45 H 0.178 0.822 46 H 0.190 0.810 47 H 0.183 0.817 48 H 0.089 0.911 49 H 0.090 0.910 50 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 3.221 8.771 -19.651 21.759 hybrid contribution 0.916 -0.493 0.294 1.081 sum 4.138 8.278 -19.357 21.456 Atomic orbital electron populations 1.21655 0.94094 1.01666 1.02019 1.21954 0.96193 0.99272 0.99738 1.21028 0.83142 0.94063 0.99138 1.43816 1.00921 1.84659 1.01424 1.19200 1.03357 1.25773 0.91148 0.93215 1.25558 1.01841 0.95382 1.00242 1.70075 1.23557 1.20023 1.41772 0.85657 0.79197 0.78146 0.79752 1.20530 1.21272 1.20813 1.21336 0.99093 0.92724 0.86866 1.22362 0.85002 0.94512 0.93093 0.92256 1.86559 1.32045 1.56122 1.61621 1.23317 0.97563 0.83108 0.97800 1.86227 1.71718 1.28836 1.37663 1.17737 0.87986 1.13912 0.86695 1.19421 0.90594 0.95037 0.86884 1.86195 1.23445 1.84959 1.30518 1.23395 0.76229 1.02846 1.05173 1.21432 1.01724 1.10767 0.91417 1.21228 0.93219 0.92676 0.98314 1.21450 0.95759 1.10825 0.97067 1.19254 0.83638 0.95431 0.92767 1.86182 1.16602 1.84925 1.36521 1.23431 0.99293 1.01451 0.83574 0.92738 0.91707 0.92468 0.94275 0.95300 0.94784 0.92486 0.93895 0.93736 0.90613 0.77972 0.92216 0.93990 0.87654 0.90892 0.90511 0.82214 0.80951 0.81737 0.91054 0.90959 0.86754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.07 9.91 71.98 0.71 -3.36 16 2 C -0.13 -5.29 6.26 30.59 0.19 -5.10 16 3 C 0.15 6.61 5.45 86.38 0.47 7.08 16 4 N -0.59 -30.45 2.35 -702.02 -1.65 -32.09 16 5 C -0.26 -15.22 9.45 84.03 0.79 -14.42 16 6 H 0.05 2.92 7.94 -2.91 -0.02 2.89 16 7 C -0.03 -1.88 4.96 84.86 0.42 -1.46 16 8 N -0.91 -53.64 11.34 21.65 0.25 -53.40 16 9 Si 0.94 46.60 29.62 68.60 2.03 48.63 16 10 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 11 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 12 H -0.28 -14.01 7.11 99.48 0.71 -13.30 16 13 C 0.13 6.16 5.00 86.38 0.43 6.59 16 14 C 0.11 5.13 3.49 30.59 0.11 5.24 16 15 H 0.06 3.21 8.14 -2.38 -0.02 3.19 16 16 O -0.56 -23.95 12.47 -144.36 -1.80 -25.75 16 17 C 0.06 2.37 5.70 71.98 0.41 2.78 16 18 O -0.33 -13.95 9.59 -67.61 -0.65 -14.59 16 19 C -0.02 -0.65 5.75 22.63 0.13 -0.52 16 20 C 0.13 3.94 6.70 22.55 0.15 4.09 16 21 O -0.34 -11.21 10.28 -79.57 -0.82 -12.03 16 22 C 0.02 0.36 9.81 113.37 1.11 1.48 16 23 C -0.23 -4.94 9.04 22.37 0.20 -4.74 16 24 C -0.04 -0.61 10.04 22.27 0.22 -0.38 16 25 C -0.23 -4.50 9.04 22.37 0.20 -4.30 16 26 C 0.14 3.87 6.70 22.55 0.15 4.03 16 27 O -0.33 -9.16 10.28 -79.60 -0.82 -9.98 16 28 C 0.02 0.25 9.81 113.37 1.11 1.36 16 29 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 30 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 32 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 33 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.03 1.51 8.04 -2.38 -0.02 1.49 16 35 H 0.06 2.22 7.49 -2.39 -0.02 2.20 16 36 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 37 H 0.04 1.95 8.03 -2.39 -0.02 1.93 16 38 H 0.08 4.20 5.35 -2.39 -0.01 4.19 16 39 H 0.37 12.80 8.97 -74.06 -0.66 12.13 16 40 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 41 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.07 1.21 7.65 -2.39 -0.02 1.19 16 44 H 0.08 1.21 7.67 -2.39 -0.02 1.19 16 45 H 0.16 2.34 6.29 -2.91 -0.02 2.32 16 46 H 0.17 1.35 8.06 -2.91 -0.02 1.33 16 47 H 0.17 1.99 6.29 -2.91 -0.02 1.97 16 48 H 0.07 0.83 7.66 -2.39 -0.02 0.82 16 49 H 0.07 0.83 7.66 -2.39 -0.02 0.81 16 50 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -77.47 411.18 3.63 -73.84 By element: Atomic # 1 Polarization: 26.75 SS G_CDS: 0.27 Total: 27.02 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: 6.82 Total: -1.65 kcal Atomic # 7 Polarization: -84.09 SS G_CDS: -1.40 Total: -85.49 kcal Atomic # 8 Polarization: -58.27 SS G_CDS: -4.09 Total: -62.35 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -77.47 3.63 -73.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299404664.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.002 kcal (2) G-P(sol) polarization free energy of solvation -77.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds